Sebastien Carrere

139

Documents

Présentation

Publications

	First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data Sébastien Carrère , Baptiste Mayjonade , David Lalanne , Sylvain Gaillard , Jérôme Verdier Data in Brief, 2023, 48, pp.109182. ⟨10.1016/j.dib.2023.109182⟩ Article dans une revue hal-04089846v1
	Comparative phylotranscriptomics reveals ancestral and derived root nodule symbiosis programmes Cyril Libourel , Jean Keller , Lukas Brichet , Anne-Claire Cazalé , Sébastien Carrère Nature Plants, 2023, 9 (7), pp.1067-1080. ⟨10.1038/s41477-023-01441-w⟩ Article dans une revue hal-04187925v1
	A high diversity of non-target site resistance mechanisms to acetolactate-synthase (ALS) inhibiting herbicides has evolved within and among field populations of common ragweed (Ambrosia artemisiifolia L.) Ingvild Loubet , Lucie Meyer , Séverine Michel , Fanny Pernin , Sébastien Carrere BMC Plant Biology, 2023, 23 (1), pp.art. 510. ⟨10.1186/s12870-023-04524-0⟩ Article dans une revue hal-04288942v1
	Genome Sequences of 17 Strains from Eight Races of Xanthomonas campestris pv. campestris Caroline Bellenot , Sébastien Carrère , Carine Gris , Laurent Noël , Matthieu Arlat Microbiology Resource Announcements, 2022, 11 (7), ⟨10.1128/mra.00279-22⟩ Article dans une revue hal-03842450v1
	Imaging Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of oxaliplatin derivatives in human tissue sections Justine Ferey , Marion Larroque , Isabelle Schmitz-Afonso , Johann Le Maître , Olivia Sgarbura Talanta, 2022, 237, pp.122915. ⟨10.1016/j.talanta.2021.122915⟩ Article dans une revue hal-03400641v1
	Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats Daniela Ramírez-Sánchez , Chrystel Gibelin-Viala , Baptiste Mayjonade , Rémi Duflos , Elodie Belmonte Frontiers in Microbiology, 2022, 13, pp.984832. ⟨10.3389/fmicb.2022.984832⟩ Article dans une revue hal-03806728v1
	MtEFD and MtEFD2: Two transcription factors with distinct neofunctionalization in symbiotic nodule development Marie-Françoise Jardinaud , Justine Fromentin , Marie-Christine Auriac , Sandra Moreau , Yann Pecrix Plant Physiology, 2022, 189 (3), pp.1587 - 1607. ⟨10.1093/plphys/kiac177⟩ Article dans une revue hal-03728310v1
	DNA demethylation and hypermethylation are both required for late nodule development in Medicago Yann Pecrix , Erika Sallet , Sandra Moreau , Olivier Bouchez , Sébastien Carrere Nature Plants, 2022, 8 (7), pp.741-749. ⟨10.1038/s41477-022-01188-w⟩ Article dans une revue hal-03728475v1
	Genome‐wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection Julien S Luneau , Maël Baudin , Thomas Quiroz Monnens , Sébastien Carrère , Olivier Bouchez New Phytologist, 2022, 12 (13), pp.235-248. ⟨10.1111/nph.18313⟩ Article dans une revue hal-03744702v1
	Symbiotic Nodule Development and Efficiency in the Medicago truncatula Mtefd-1 Mutant Is Highly Dependent on Sinorhizobium Strains Marie‐françoise Jardinaud , Sebastien Carrere , Benjamin Gourion , Pascal Gamas Plant and Cell Physiology, 2022, 64 (1), pp.27-42. ⟨10.1093/pcp/pcac134⟩ Article dans une revue hal-03847531v1
	Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages Julien Luneau , Aude Cerutti , Brice Roux , Sébastien Carrère , Marie‐françoise Jardinaud Molecular Plant Pathology, 2022, 23 (2), pp.159-174. ⟨10.1111/mpp.13117⟩ Article dans une revue hal-03580527v1
	Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense Ophélie Léger , Frédérick Garcia , Mehdi Khafif , Sébastien Carrere , Nathalie Leblanc-Fournier BMC Biology, 2022, 20 (1), pp.292. ⟨10.1186/s12915-022-01495-w⟩ Article dans une revue hal-03957987v1
	Population genomics of apricots unravels domestication history and adaptive events Alexis Groppi , Shuo Liu , A. Cornille , David Tricon , Quynh Trang Bui Nature Communications, 2021, 12 (1), pp.3956. ⟨10.1038/s41467-021-24283-6⟩ Article dans une revue hal-03282504v1
	MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula Sebastien Carrere , Jerome Verdier , Pascal Gamas Plant and Cell Physiology, 2021, 62 (9), pp.1494-1500. ⟨10.1093/pcp/pcab110⟩ Article dans une revue hal-03420304v1
	High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Article dans une revue hal-02460008v1
	EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome Manuel Gonzalez‐fuente , Sébastien Carrere , Dario Monachello , Benjamin G Marsella , Anne‐claire Cazalé Molecular Plant Pathology, 2020, 21 (10), pp.1257-1270. ⟨10.1111/mpp.12965⟩ Article dans une revue hal-03052440v1
	LeGOO: An Expertized Knowledge Database For The Model Legume Medicago truncatula Sébastien Carrere , Marion Verdenaud , Clare Gough , Jerome Gouzy , Pascal Gamas Plant and Cell Physiology, 2020, 61 (1), pp.203-211. ⟨10.1093/pcp/pcz177⟩ Article dans une revue hal-02290862v1
	Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Justine Foucher , Mylène Ruh , Anne Preveaux , Sébastien Carrere , Sandra Pelletier BMC Genomics, 2020, 21 (1), pp.566. ⟨10.1186/s12864-020-06972-6⟩ Article dans une revue hal-02945634v1
	Toward a comprehensive study for multielemental quantitative LA-ICP MS bioimaging in soft tissues Carine Arnaudguilhem , Marion Larroque , Olivia Sgarbura , Dominique Michau , François Quenet Talanta, 2020, 222, 121537 (11 p.). ⟨10.1016/j.talanta.2020.121537⟩ Article dans une revue hal-03019255v1
	A receptor-like kinase enhances sunflower resistance to Orobanche cumana Pauline Duriez , Sonia Vautrin , Marie-Christine Auriac , Julia Bazerque , Marie-Claude Boniface Nature Plants, 2019, 5 (12), pp.1211 - 1215. ⟨10.1038/s41477-019-0556-z⟩ Article dans une revue hal-02626477v1
	Pangenomic type III effector database of the plant pathogenic Ralstonia spp. Cyrus Sabbagh , Sébastien Carrere , Fabien Lonjon , Fabienne Vailleau , Alberto P. Macho PeerJ, 2019, 7, pp.1-21. ⟨10.7717/peerj.7346⟩ Article dans une revue hal-02623550v1
	Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire Nicolas Denancé , Boris Szurek , Erin L Doyle , Emmanuelle Lauber , Lisa Fontaine-Bodin New Phytologist, 2018, 219 (1), pp.391-407. ⟨10.1111/nph.15148⟩ Article dans une revue hal-02090739v1
	A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale Léa Frachon , Claudia Bartoli , Sebastien Carrere , Olivier Bouchez , Adeline Chaubet Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00967⟩ Article dans une revue hal-02373598v1
	Whole-genome landscape of Medicago truncatula symbiotic genes Yann Pecrix , S. Evan Staton , Erika Sallet , Christine Lelandais-Brière , Sandra Moreau Nature Plants, 2018, 4 (12), pp.1017-1025. ⟨10.1038/s41477-018-0286-7⟩ Article dans une revue hal-02383693v1
	The Rosa genome provides new insights into the domestication of modern roses Olivier Raymond , Jerome Gouzy , Jérémy Just , Hélène Badouin , Marion Verdenaud Nature Genetics, 2018, 50 (6), pp.772-777. ⟨10.1038/s41588-018-0110-3⟩ Article dans une revue hal-01798003v1
	In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩ Article dans une revue hal-02373577v1
	Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids Fanny Bonnafous , Ghislain Fiévet , Nicolas Blanchet , Marie-Claude Boniface , Sébastien Carrere TAG Theoretical and Applied Genetics, 2018, 131 (2), pp.319-332. ⟨10.1007/s00122-017-3003-4⟩ Article dans une revue hal-02628425v1
	High conservation of the transcriptional response to acetolactate-synthase-inhibiting herbicides across plant species Christophe Délye , A. Duhoux , J. A. C. Gardin , Jerome Gouzy , Sébastien Carrere Weed Research, 2018, 58 (1), pp.2 - 7. ⟨10.1111/wre.12276⟩ Article dans une revue hal-02628831v1
	Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux Nature Ecology & Evolution, 2018, 2, pp.194. ⟨10.1038/s41559-017-0405-2⟩ Article dans une revue hal-02622028v1
	High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero Ebrahim Osdaghi , Natalia Forero Serna , Stéphanie Bolot , Marion Fischer-Le Saux , Marie-Agnès Jacques Genome Announcements, 2017, 5 (48), pp.e01378-17. ⟨10.1128/genomeA.01378-17⟩ Article dans une revue hal-01905579v1
	Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux Nature Ecology & Evolution, 2017, 1 (10), pp.1551-1561. ⟨10.1038/s41559-017-0297-1⟩ Article dans une revue hal-01723277v1
	Genetic control of plasticity of oil yield for combined abiotic stresses using a joint approach of crop modeling and genome-wide association Brigitte Mangin , Pierre Casadebaig , Eléna Cadic , Nicolas Blanchet , Marie-Claude Boniface Plant, Cell and Environment, 2017, 40 (10), pp.2276-2291. ⟨10.1111/pce.12961⟩ Article dans une revue hal-01608380v1
	Genomic Prediction of Sunflower Hybrids Oil Content Brigitte Mangin , Fanny Bonnafous , Nicolas Blanchet , Marie-Claude Boniface , Emmanuelle Bret-Mestries Frontiers in Plant Science, 2017, 8, pp.1-12. ⟨10.3389/fpls.2017.01633⟩ Article dans une revue hal-02624895v1
	The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩ Article dans une revue hal-01603287v1
	myGenomeBrowser: building and sharing your own genome browser Sébastien Carrere , Jerome Gouzy Bioinformatics, 2017, 33 (8), pp.1255-1257. ⟨10.1093/bioinformatics/btw800⟩ Article dans une revue hal-01608904v1
	Transcriptional markers enable identification of rye-grass (Lolium sp.) plants with non-target -site-based resistance to herbicides inhibiting acetolactate-synthase Arnaud Duhoux , Sebastien Carrere , Christophe Délye Plant Science, 2017, 257, pp.22-36. ⟨10.1016/j.plantsci.2017.01.009⟩ Article dans une revue hal-01607524v1
	Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France Amandine Cunty , Sophie Cesbron , Martial Briand , Sebastien Carrere , Françoise Poliakoff Brazilian Journal of Microbiology, 2016, 47 (3), pp.529-530. ⟨10.1016/j.bjm.2016.04.023⟩ Article dans une revue hal-01415259v1
	High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants I. Robène , Stéphanie S. Bolot , Olivier Pruvost , Matthieu Arlat , Laurent Noel Genome Announcements, 2016, 4 (5), pp.e00902-16. ⟨10.1128/genomeA.00902-16⟩ Article dans une revue hal-02629928v1
	Comparative analysis of expressed CRN and RXLR effectors from two Plasmopara species causing grapevine and sunflower downy mildew Pedro-Felipe Mestre Artigues , Sebastien Carrere , Jerome Gouzy , Marie-Christine Piron , Denis D. Tourvieille de Labrouhe Plant Pathology, 2016, 65 (5), pp.767-781. ⟨10.1111/ppa.12469⟩ Article dans une revue hal-02640035v1
	Robotic Versus Laparoscopic Total Mesorectal Excision (TME) for Sphincter-Saving Surgery: Is There Any Difference in the Transanal TME Rectal Approach? Pierre-Emmanuel Colombo , Martin Bertrand , Mathias Alline , Eric Boulay , Anne Mourregot Annals of Surgical Oncology, 2016, 23 (5), pp.1594 - 1600. ⟨10.1245/s10434-015-5048-4⟩ Article dans une revue hal-01908670v1
	Standardized single docking, four arms and fully robotic proctectomy for rectal cancer: the key points are the ports and arms placement Martin Marie Bertrand , Pierre-Emmanuel Colombo , Anne Mourregot , Drissa Traore , Sebastien Carrere Journal of Robotic Surgery, 2016, 10 (2), pp.171 - 174. ⟨10.1007/s11701-015-0551-y⟩ Article dans une revue hal-01908899v1
	Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara Halstedii and their use to identify pathotypes from field isolates Quentin Gascuel , Amandine A. Bordat , Erika Sallet , Nicolas Pouilly , Sebastien Carrere PLoS ONE, 2016, 11 (2), pp.1-19. ⟨10.1371/journal.pone.0148513⟩ Article dans une revue hal-02632845v1
	Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩ Article dans une revue hal-03383508v1
	ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass) Jeanne Aude Christiane Gardin , Jerome Gouzy , Sebastien Carrere , Christophe C. Delye BMC Genomics, 2015, 16, ⟨10.1186/s12864-015-1804-x⟩ Article dans une revue hal-02635227v1
	Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula Céline Camps , Marie-Françoise Jardinaud , David Rengel , Sebastien Carrere , Christine Hervé New Phytologist, 2015, 208 (1), pp.224-240. ⟨10.1111/nph.13427⟩ Article dans une revue hal-02632553v1
	Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species Susete Alves Carvalho , Gregoire G. Aubert , Sebastien Carrere , Corinne Cruaud , Anne-Lise Brochot Plant Journal, 2015, 84 (1), pp.1-19. ⟨10.1111/tpj.12967⟩ Article dans une revue hal-02631162v1
	Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053 Céline Pesce , Stéphanie Bolot , Edwige Berthelot , Claude Bragard , Sebastien Cunnac Genome Announcements, 2015, 3 (5), pp.e01174-15. ⟨10.1128/genomeA.01174-15⟩ Article dans une revue hal-01594261v1
	Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans Isabelle Pieretti , Stéphane Cociancich , Stéphanie Bolot , Sébastien Carrere , Alexandre Morisset Genes, 2015, 6 (3), pp.714-733. ⟨10.3390/genes6030714⟩ Article dans une revue hal-01594241v1
	High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Céline Pesce , Stéphanie Bolot , Sébastien Cunnac , Perrine Portier , Marion Le Saux Genome Announcements, 2015, 3 (1), ⟨10.1128/genomeA.01574-14⟩ Article dans une revue hal-01209993v1
	RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance Arnaud Duhoux , Sebastien Carrere , Jerome Gouzy , Ludovic Bonin , Christophe C. Delye Plant Molecular Biology, 2015, 87 (4-5), pp.473-487. ⟨10.1007/s11103-015-0292-3⟩ Article dans une revue hal-02635561v1
	Whole-genome sequencing of 10 Pseudomonas syringae strains representing different host range spectra Claudia Bartoli , Sebastien Carrere , Jay Ram Lamichhane , Leonardo Varvaro , Cindy E. Morris Genome Announcements, 2015, 3 (2), pp.e00379-15. ⟨10.1128/genomeA.00379-15⟩ Article dans une revue hal-02632911v1
	Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817. Stéphanie Bolot , Aude Cerutti , Sebastien Carrere , Matthieu Arlat , Marion Le Saux Genome Announcements, 2015, 3 (5), ⟨10.1128/genomeA.01023-15⟩ Article dans une revue hal-01455989v1
	Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Brice Roux , Stéphanie Bolot , Endrick Guy , Nicolas Denancé , Martine Lautier BMC Genomics, 2015, 16 (1), pp.975. ⟨10.1186/s12864-015-2190-0⟩ Article dans une revue hal-01455988v1
	The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection. Alice Boulanger , Claudine Zischek , Martine Lautier , Stevie Jamet , Pauline Rival mBio, 2014, 5 (5), pp.e01527-14. ⟨10.1128/mBio.01527-14⟩ Article dans une revue hal-02637892v1
	Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369. Lionel Gagnevin , Stéphanie Bolot , J L Gordon , Olivier Pruvost , Christian Vernière Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00727-14⟩ Article dans une revue hal-01209994v1
	RNA-Seq profile of flavescence dorée phytoplasma in grapevine. Simona Abbà , Luciana Galetto , Patricia Carle , Sebastien Carrere , Massimo Delledonne BMC Genomics, 2014, 15 (1), pp.1-13. ⟨10.1186/1471-2164-15-1088⟩ Article dans une revue hal-02636852v1
	An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing Brice Roux , Nathalie Rodde , Marie-Françoise Jardinaud , Ton Timmers , Laurent Sauviac Plant Journal, 2014, 77 (6), pp.817-837. ⟨10.1111/tpj.12442⟩ Article dans une revue hal-03082945v1
	Genome Sequencing of Ralstonia solanacearum Biovar 3, Phylotype I, Strains Rs-09-161 and Rs-10-244, Isolated from Eggplant and Chili in India. Raman Ramesh , Sapna Gaitonde , Gauri Achari , Trupti Asolkar , Narendra Pratap Singh Genome Announcements, 2014, 2 (3), ⟨10.1128/genomeA.00323-14⟩ Article dans une revue hal-02629436v1
	Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642. Stéphanie S. Bolot , Alejandra Munoz Bodnar , Sébastien Cunnac , Erika Ortiz , Boris Szurek Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00679-13⟩ Article dans une revue hal-02642222v1
	Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valerie Barbe , Guillaume P. Robin BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-658⟩ Article dans une revue hal-01209938v1
	Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads Armelle Darrasse , Sebastien Carrere , Valérie Barbe , Tristan Boureau , Mario L. Arrieta-Ortiz BMC Genomics, 2013, 14, pp.761--790. ⟨10.1186/1471-2164-14-761⟩ Article dans une revue hal-01199326v1
	Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16. Stéphanie S. Bolot , Brice Roux , Sebastien Carrere , Bo-Le Jiang , Ji-Liang Tang Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00465-13⟩ Article dans une revue hal-02645772v1
	Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151 Mario L. Arrieta-Ortiz , Luis M. Rodríguez-R , Alvaro L. Pérez-Quintero , Lucie Poulin , Ana C. Díaz PLoS ONE, 2013, 8 (11), pp.e79704. ⟨10.1371/journal.pone.0079704⟩ Article dans une revue hal-01199314v1
	Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on Arabidopsis revealed by association and reverse genetics Endrick Guy , Anne Genissel , Ahmed Hajri , Matthieu Chabannes , Perrine David mBio, 2013, 4 (3), pp.e00538. ⟨10.1128/mBio.00538-12⟩ Article dans une revue hal-01199307v1
	High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836. Marie Agnes Jacques , Stéphanie S. Bolot , Erika Charbit , Armelle Darrasse , Martial Briand Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01035-13⟩ Article dans une revue hal-02649259v1
	High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119. Armelle Darrasse , Stéphanie S. Bolot , Laurana Serres Giardi , Erika Charbit , Tristan Boureau Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01036-13⟩ Article dans une revue hal-02648487v1
	High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Sébastien Cunnac , Stéphanie S. Bolot , Natalia Forero Serna , Erika Ortiz , Boris Szurek Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00674-13⟩ Article dans une revue hal-02643147v1
	The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts Guillaume Dejean , Servane Blanvillain-Baufume , Alice Boulanger , Armelle Darrasse , Thomas Duge de Bernonville New Phytologist, 2013, 198 (3), pp.899 - 915. ⟨10.1111/nph.12187⟩ Article dans une revue hal-01209910v1
	Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5. Stéphanie S. Bolot , Endrick Guy , Sebastien Carrere , Valérie Barbe , Matthieu Arlat Genome Announcements, 2013, 1 (1), ⟨10.1128/genomeA.00032-12⟩ Article dans une revue hal-02649490v1
	Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex Nemo Peeters , Sebastien Carrere , Maria Anisimova , Laure Plener , Anne-Claire Cazalé BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-859⟩ Article dans une revue hal-02647666v1
	A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments David Rengel , Sandrine Arribat , Pierre Maury , Marie-Laure Martin-Magniette , Thibault Hourlier PLoS ONE, 2012, 7 (10), pp.e45249. ⟨10.1371/journal.pone.0045249⟩ Article dans une revue hal-02644423v1
	Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik BMC Genomics, 2012, 13 (1), pp.658--680. ⟨10.1186/1471-2164-13-658⟩ Article dans une revue hal-01199327v1
	Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula. Federico Ariel , Marianne Brault-Hernandez , Carole Laffont , Emeline Huault , Mathias Brault The Plant cell, 2012, 24 (9), pp.3838-52. ⟨10.1105/tpc.112.103267⟩ Article dans une revue hal-00856169v1
	Microsatellite markers for characterization of native and introduced populations of Plasmopara viticola, the causal agent of grapevine downy mildew Mélanie Rouxel , Daciana Papura , Marilise Nogueira , Virginie Machefer , Damien Dezette Applied and Environmental Microbiology, 2012, 78 (7), pp.6337-6340. ⟨10.1128/AEM.01255-12⟩ Article dans une revue hal-02650268v1
	'Flavescence doree' phytoplasma genome: a metabolism oriented towards glycolysis and protein degradation Patricia Carle , Sylvie Malembic-Maher , Nathalie Arricau-Bouvery , Delphine Desque , Sandrine Eveillard Bulletin of Insectology, 2011, 64, pp.S13-S14 Article dans une revue hal-02649904v1
	Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences Falah As-Sadi , Sebastien Carrere , Quentin Gascuel , Thibault Hourlier , David Rengel BMC Genomics, 2011, 12, pp.498. ⟨10.1186/1471-2164-12-498⟩ Article dans une revue hal-02648363v1
	Partial Chromosome Sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay Patricia Carle , Colette Saillard , Nathalie Carrère , Sebastien Carrere , Sybille Duret Applied and Environmental Microbiology, 2010, 76 (11), pp.3420-3426. ⟨10.1128/AEM.02954-09⟩ Article dans une revue hal-02658836v1
	Specific Genes from the Potato Brown Rot Strains of Ralstonia solanacearum and Their Potential Use for Strain Detection Alice Guidot , Mounira Elbaz , Sebastien Carrere , M.I. Siri , M.J. Pianzzola Phytopathology, 2009, 99 (9), pp.1105-1112. ⟨10.1094/PHYTO-99-9-1105⟩ Article dans une revue hal-02668604v1
	Mobyle: a new full web bioinformatics framework Bertrand Néron , Hervé Ménager , Corinne Maufrais , Nicolas Joly , Julien Maupetit Bioinformatics, 2009, 25 (22), pp.3005-3011. ⟨10.1093/bioinformatics/btp493⟩ Article dans une revue hal-01287963v1
	FrameDP: sensitive peptide detection on noisy matured sequences Jerome Gouzy , Sebastien Carrere , Thomas Schiex Bioinformatics, 2009, 25 (5), pp.670-671. ⟨10.1093/bioinformatics/btp024⟩ Article dans une revue hal-02665259v1
	The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik BMC Genomics, 2009, 10, pp.616. ⟨10.1186/1471-2164-10-616⟩ Article dans une revue hal-00730090v1
	The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome Colette Saillard , Patricia Carle , Sybille Duret Nurbel , Raphael Henri , Nabil Killiny BMC Genomics, 2008, 9, 195p1-195p13. ⟨10.1186/1471-2164-9-195⟩ Article dans une revue hal-02664161v1
	Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩ Article dans une revue hal-01655676v1
	Genomic Structure and Phylogeny of the Plant Pathogen Ralstonia solanacearum Inferred from Gene Distribution Analysis Alice Guidot , Philippe Prior , Jens Schoenfeld , Sébastien Carrere , Stéphane Genin Journal of Bacteriology, 2007, 189, pp.377-387. ⟨10.1128/JB.00999-06⟩ Article dans une revue hal-02936820v1
	Microarray-Based Detection and Typing of the Rhizobium Nodulation Gene nodC: Potential of DNA Arrays To Diagnose Biological Functions of Interest Cyril Bontemps , Geoffroy Golfier , Carine Gris-Liebe , Sebastien Carrere , Luc Talini Applied and Environmental Microbiology, 2005, 71 (12), pp.8042 - 8048. ⟨10.1128/AEM.71.12.8042–8048.2005⟩ Article dans une revue hal-01655599v1
	The ProDom database of protein domain families: more emphasis on 3D Catherine Bru , Emmanuel Courcelle , Sébastien Carrère , Yoann Beausse , Sandrine Dalmar Nucleic Acids Research, 2005, 33 (Database issue), pp.D212-D215. ⟨10.1093/nar/gki034⟩ Article dans une revue hal-01214150v1

	A TnSeq approach to study the genetic bases of Xanthomonas campestris pv. campestris adaptation to in vitro and in planta conditions Julien Luneau , M. Baudin , Sébastien Carrere , Olivier Bouchez , Marie-Françoise Jardinaud 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02738045v1
	Integrated strategy to unravel the biological role of evolutionary conserved type III effectors from xylem-colonizing bacteria Manuel Gonzalez Fuente , Celine Rembliere , Sébastien Carrere , Noé Arroyo Velez , Nemo Peeters 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02735402v1
	Signalling dynamics of the RRS1-RPS4 NLR immune complex at the chromatin during ETI Elisabeth Grund , B. Zhou , Patrick Dabos , X. Sun , Sébastien Carrere 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02736505v1
	A TnSeq approach to study the genetic bases of Xanthomonas campestris pv. campestris adaptation to in vitro and in planta conditions. Julien Luneau , Mael Baudin , Sébastien Carrere , Olivier Bouchez , Marie-Françoise Jardinaud Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02361887v1
	The Ralstonia solanacearum PopP2 effector exploits immune-associated MAPKs to potentiate its virulence functions and evade host recognition Maxime Escouboué , Gaëlle Huet , Céline Vicédo , A. Jauneau , Fabrice Roux 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02737637v1
	A whole-transcriptome approach to unravel non-target-site-based resistance to ALS inhibitors in Ambrosia artemisiifolia Christophe Délye , Lucie Meyer , Sébastien Carrere , Jerome Gouzy , Fanny Pernin 18. European Weed Research Society Symposium, EWRS 2018, "New approaches for smarter weed management", Jun 2018, Ljubljana, Slovenia Communication dans un congrès hal-02733955v1
	Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula. Yann Pecrix , S Evan Staton , Erika Sallet , Christine Lelandais Briere , Sandra Moreau International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France Communication dans un congrès hal-03355269v1
	Pathobiome entomopathogenic nematodes Development of methodology for a taxonomic assignation at the species level in the the pathobiome of entomopathogenic nematodes from the Steinernema genus Jean-Claude Ogier , Sophie Gaudriault , Pauline Heuillard , Olivier Zemb , Sebastien Carrere 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France Communication dans un congrès hal-01603194v1
	Le pois, espèce modèle ? Judith Burstin , Nadim N. Tayeh , Anthony Klein , Jonathan Kreplak , Françoise Jacquin 1. Rencontres Francophones sur les Légumineuses (RFL1), Institut National de la Recherche Agronomique (INRA). FRA., May 2016, Dijon, France Communication dans un congrès hal-02741352v1
	Pea in the genomic era Judith Burstin , Susete Alves Carvalho , Christelle Aluome , Nadim Tayeh , Anne-Lise Brochot Séminaire IFR AIB (Agrobiosciences, Interactions & Biodiversité), Feb 2015, Toulouse, France, 24 février 2015, France Communication dans un congrès hal-01536570v1
	Pea genomic tools for functional and structural approaches Nadim N. Tayeh , Susete Alves Carvalho , Christelle Aluome , Sébastien Carrere , Jonathan Kreplak Mendel's legacy - 150 years of the genius of genetics, Masaryk University. CZE., Sep 2015, Brno, Czech Republic Communication dans un congrès hal-02743963v1
	Making sense out of phytoviral metagenomics: what have we learned from the Kerguelen Islands phytovirome? Thierry T. Candresse , Armelle Marais , Sébastien Theil , Chantal Faure , Laurence Svanella-Dumas 15. Rencontres de Virologie Végétale (RVV), Jan 2015, Aussois, France Communication dans un congrès hal-02798683v1
	Comparative genomics and transcriptomics of #Xanthomonas campestris# : Session 3- Physiologie, génétique et génomique des bactéries Stéphanie Bolot , Brice Roux , Endrick Guy , Nicolas Denancé , Martine Lautier 11èmes Rencontres Plantes-Bactéries, Feb 2014, Aussoies, France. pp.40 Communication dans un congrès hal-01456725v1
	Pea in the genomic era Susete Alves Carvalho , Christelle Aluome , Gregoire G. Aubert , Corinne Cruaud , Anthony Klein 2. Adam Kondorosi Symposium "Frontiers in Legume Biology",, Dec 2014, Gif-sur-Yvette, France Communication dans un congrès hal-02797923v1
	Characterisation of rye-grass (Lolium sp.) transcriptome-wide response to ALS-inhibiting herbicides Arnaud Duhoux , Jerome Gouzy , Sebastien Carrere , Ludovic Bonin , Christophe C. Delye European Weed Research Society (EWRS) workshop "Herbicide-Resistance in Europe: challenges, opportunities and threats", European Weed Research Society (EWRS). GBR., May 2014, Frankfurt, Germany. 69 p Communication dans un congrès hal-02739894v1
	Identification de mécanismes de résistance non liée à la cible grâce à la transcriptomique Jeanne Gardin , Sébastien Carrère , Jerome Gouzy , B. Couloume , C. Engel 22. Conférence du Columa, Journées internationales sur la lutte contre les mauvaises herbes, Association Française de Protection des Plantes (AFPP). FRA., Dec 2013, Dijon, France. 45 p Communication dans un congrès hal-02747026v1
	Contrasted patterns of phytoviral metagenomes in wild and agricultural environments Thierry T. Candresse , Armelle Marais , Chantal Faure , Sébastien Theil , Laurence Svanella-Dumas 19. Australasian Plant Pathology Conference, Nov 2013, Auckland, New Zealand Communication dans un congrès hal-02809610v1
	Diagnostic de la résistance non liée à la cible chez les ray grass (Lolium sp.) : développement de tests rapides et fiables Arnaud Duhoux , Jerome Gouzy , Sébastien Carrère , L. Bonin , Christophe Délye 22. Conférence du Columa, Journées internationales sur la lutte contre les mauvaises herbes, Association Française de Protection des Plantes (AFPP). FRA., Dec 2013, Dijon, France. 45 p Communication dans un congrès hal-02746199v1
	A transcriptomics-based approach enables the first identification of candidate genes involved in non-target-site-based resistance to herbicides in a grass weed (Alopecurus myosuroides) Jeanne Gardin , Roland Beffa , Jerome Gouzy , Sébastien Carrère , Christophe C. Delye Global Herbicide Resistance Challenge Conference, Feb 2013, Perth, Australia. 115 p Communication dans un congrès hal-02747324v1
	Genome mining reveals a novel and promising NRPS gene cluster in #Xanthomonas albilineans#, #Xanthomonas oryzae# and #Xanthomonas translucens# Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valérie Barbe , Guillaume P. Robin 59° Congresso Brasileiro de Genética, Sep 2013, Águas de Lindóia, Brazil Communication dans un congrès hal-01456738v1
	Inventory and evolution of type III effectors in the Ralstonia solanacearum species complex Nemo Peeters , Sebastien Carrere , Anne-Claire Noel , Stéphane Genin , Maria Anisimova COST SUSTAIN FA1208, Oct 2013, Birnam, United Kingdom Communication dans un congrès hal-01131069v1
	Alopecurus myosuroides transcriptome database (ALOMYBase): unravelling the genetic bases of non-target-site-based resistance to herbicides Jeanne Gardin , Jerome Gouzy , Sebastien Carrere , Roland Beffa , Christophe C. Delye 16. European Weed Research Symposium (EWRS), European Weed Research Society (EWRS). GBR., Jun 2013, Samsun, Turkey. pp.259 Communication dans un congrès hal-02749853v1
	Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Sebastien Carrere , Helene Chiapello 5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne Communication dans un congrès hal-01837266v1
	Transcriptome screening-based identification of candidate genes endowing non-target-site-based resistance to herbicides inhibiting ALS in Lolium sp Arnaud Duhoux , Jerome Gouzy , Sebastien Carrere , Christophe C. Delye 16. European Weed Research Symposium (EWRS), European Weed Research Society (EWRS). GBR., Jun 2013, Samsun, Turkey. pp.269 Communication dans un congrès hal-02746079v1
	Contrasted patterns of phytoviral metagenomes in wild and agricultural environments Thierry T. Candresse , Armelle Marais , Chantal Faure , Sébastien Theil , Laurence Svanella-Dumas EMBO Workshop “Green viruses, from gene to landscape”, Sep 2013, Hyères-les-Palmiers, France Communication dans un congrès hal-02810681v1
	Genome and transcriptome analysis to reveal adaptation to new environments and hosts Lionel Gagnevin , Brice Roux , Stéphanie Bolot , Sebastien Carrere , Erika Charbit APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States Communication dans un congrès hal-01209932v1
	Progrès et contraintes pour le développement de la métagénomique phytovirale Thierry T. Candresse , Armelle Marais , Chantal Faure , Laurence Svanella-Dumas , Sebastien Carrere Journées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle -sur-la-Sorgue, France. 1 p Communication dans un congrès hal-02810961v1
	Use of 454 pyrosequencing for the fast and efficient characterization of known and novel viral agents in Prunus materials Thierry T. Candresse , Armelle Marais , Chantal Faure , Sebastien Carrere , Pascal Gentit 22. International conference on virus and other graft transmissible diseases of fruit crops, Jun 2012, Rome, Italy. p. 47 Communication dans un congrès hal-02803408v1
	Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads. [Abstract] Armelle Darrasse , Sébastien Carrere , Valérie Barbe , Tristan Bourreau , Adriana Bernal 4th Xanthomonas Genomics Conference, Jul 2012, Angers, France Communication dans un congrès hal-01202944v1
	Genomic resources for functional analysis in Medicago truncatula and related crop species Frederic Debellé , C. Belser , J.M. Aury , K. Labadie , Brice Roux 6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India Communication dans un congrès hal-02747944v1
	The complete genome sequence of Xanthomonas albilineans provides insights into pathogenicity of this sugarcane pathogen and allows further assessments of the large diversity within this species Isabelle Pieretti , Stéphane Cociancich , Valerie Barbe , Sébastien Carrere , Ralf Koebnik 5th European conference on prokaryotic and fungal genomics, Sep 2011, Göttingen, Germany Communication dans un congrès hal-01202957v1
	Development of genomic resources for Medicago truncatula and related legume crops Frederic Debellé , Marion Verdenaud , Anne-Marie Dudez , Nicolas Samson , Olivier Saurat Model Legume Congress 2011, Institut National Polytechnique (Toulouse) (Toulouse INP). Castanet Tolosan, FRA., May 2011, Sainte Maxime, France Communication dans un congrès hal-02746654v1
	The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik 14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec City, Canada. 2 p Communication dans un congrès hal-02817753v1
	La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik 7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p Communication dans un congrès hal-02824029v1
	La séquence du génome de Xanthomonas albilineans dévoile des particularités surprenantes chez cette bactérie pathogène de la canne à sucre Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik 8èmes Rencontres plantes-bactéries, Jan 2008, Aussoies, France Communication dans un congrès hal-01202965v1
	BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network Marc Wessner , Martin Senger , Franck Samson , Philippe Picouet , François Moreews Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France Communication dans un congrès inria-00327528v1
	The partial chromosome sequence of Spiroplasma citri strain GII3-3X Patricia Carle , Colette Saillard , Alain A. Blanchard , Nathalie Carrère , Sebastien Carrere 16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom Communication dans un congrès hal-02753198v1

	FUNCTIONAL CHARACTERIZATION OF THE XANTHOMONAS CAMPESTRIS TALOME Corinne Audran , Charleux Brice , Carlos Andrés Zárate-Chaves , Nicolas Denancé , Ivanna Fuentes ICPP2023, Aug 2023, lyon, France Poster de conférence hal-04209771v1
	INVOLVEMENT OF TALES IN XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS PATHOGENICITY IN CAULIFLOWER Charleux Brice , Carine Gris , Ivanna Fuentes , Caroline Bellenot , Marie‐françoise Jardinaud ICPP2023, Aug 2023, lyon, France Poster de conférence hal-04208368v1
	Identification de gènes liés à la résistance aux herbicides non liée à la cible chez les Ivraies : vers des tests « moléculaires » de diagnostic Christophe Délye , Arnaud Duhoux , Sebastien Carrere , Ludovic Bonin 23. Conference du COLUMA - Journées Internationales sur la Lutte contre les Mauvaises Herbes, Dec 2016, Dijon, France. AFPP - Association Française de Protection des Plantes, pp.220-229, 2016 Poster de conférence hal-01604115v1
	Recent pea genomic resources will enhance complementary improvement strategies in this crop Judith Burstin , Susete Alves Carvalho , Nadim N. Tayeh , Christelle Aluome , Virginie Bourion 6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatoon, Canada. , 225 p., 2014 Poster de conférence hal-02743375v1
	Analysis of Amalgamaviridae diversity in the Kerguelen Islands ecosystem using two different strategies for metagenome analysis Thierry T. Candresse , Armelle Marais , Chantal Faure , Laurence Svanella-Dumas , Sebastien Carrere 14. Rencontres de Virologie Végétale, Jan 2013, Aussois, France. p. 56, 2013 Poster de conférence hal-02805457v1
	Génomique comparative dans le genre Xenorhabdus : l'espèce X. Poinarii caractérisée par un pouvoir pathogène atténué et un génome de petite taille Jean-Claude Ogier , Sylvie Pages , Patrick Tailliez , Gaëlle Bisch , Corinne Teyssier Journées des Microbiologistes de l’INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. , 2012 Poster de conférence hal-02810864v1
	The partial chromosome sequence of Spiroplasma citri strain GII3-3X Patricia Carle , Colette Saillard , Alain A. Blanchard , N Carrere , Sébastien Carrère 16th International Congress of the International Organization for Mycoplasmology, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006 Poster de conférence hal-02816748v1

	Medicago sativa cv. Mercedes genome sequence Sébastien Carrere , Jerome Gouzy , Frédéric Debellé , William Marande , Bernadette Julier 2020 Autre publication scientifique hal-02993163v2

	A fully sequenced collection of homozygous EMS mutants for forward and reverse genetic screens in Arabidopsis thaliana Sébastien Carrère , Jean-Marc Routaboul , Pauline Savourat , Caroline Bellenot , Hernán López 2023 Pré-publication, Document de travail hal-04372773v1
	Arabidopsis hydathodes are sites of intense auxin metabolism and nutrient scavenging Jean-Marc Routaboul , Caroline Bellenot , Gilles Clément , Sylvie Citerne , Céline Remblière 2023 Pré-publication, Document de travail hal-04122145v1
	Comparative phylotranscriptomics reveals a 110 million years-old symbiotic program Cyril Libourel , Jean Keller , Lukas Brichet , Anne-Claire Cazalé , Sébastien Carrere 2022 Pré-publication, Document de travail hal-03811677v1
	Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptation at early infection stages Laurent D. Noël , Julien S Luneau , Aude Cerutti , Brice Roux , Sébastien Carrère 2021 Pré-publication, Document de travail hal-03358284v1
	Genome sequence of the cluster root forming white lupin; Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol 2019 Pré-publication, Document de travail hal-02790529v1
	Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret , Corinne Rancurel , Martial Briand , Sébastien Carrere 2018 Pré-publication, Document de travail hal-02788818v1

	Rapport d'étape chantier entrepôt et annuaire institutionnels pour les données de la recherche Windpouire Esther Dzale Yeumo , Lydie Soler , Sophie Aubin , Christine Boizot-Szantaï , Patrice Buche [0] 2014, 18 p Rapport hal-02801608v1
	Rapport de synthèse du chantier DOI Windpouire Esther Dzale Yeumo , Lydie Soler , Michael M. Alaux , Robert R. Bossy , Sebastien Carrere [0] 2014, 47 p Rapport hal-02801364v1

Sebastien Carrere

Présentation

Publications

First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

Comparative phylotranscriptomics reveals ancestral and derived root nodule symbiosis programmes

A high diversity of non-target site resistance mechanisms to acetolactate-synthase (ALS) inhibiting herbicides has evolved within and among field populations of common ragweed (Ambrosia artemisiifolia L.)

Genome Sequences of 17 Strains from Eight Races of Xanthomonas campestris pv. campestris

Imaging Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of oxaliplatin derivatives in human tissue sections

Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats

MtEFD and MtEFD2: Two transcription factors with distinct neofunctionalization in symbiotic nodule development

DNA demethylation and hypermethylation are both required for late nodule development in Medicago

Genome‐wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection

Symbiotic Nodule Development and Efficiency in the Medicago truncatula Mtefd-1 Mutant Is Highly Dependent on Sinorhizobium Strains

Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages

Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense

Population genomics of apricots unravels domestication history and adaptive events

MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

LeGOO: An Expertized Knowledge Database For The Model Legume Medicago truncatula

Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

Toward a comprehensive study for multielemental quantitative LA-ICP MS bioimaging in soft tissues

A receptor-like kinase enhances sunflower resistance to Orobanche cumana

Pangenomic type III effector database of the plant pathogenic Ralstonia spp.

Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire

A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

Whole-genome landscape of Medicago truncatula symbiotic genes

The Rosa genome provides new insights into the domestication of modern roses

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids

High conservation of the transcriptional response to acetolactate-synthase-inhibiting herbicides across plant species

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Genetic control of plasticity of oil yield for combined abiotic stresses using a joint approach of crop modeling and genome-wide association

Genomic Prediction of Sunflower Hybrids Oil Content

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

myGenomeBrowser: building and sharing your own genome browser

Transcriptional markers enable identification of rye-grass (Lolium sp.) plants with non-target -site-based resistance to herbicides inhibiting acetolactate-synthase

Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France

High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

Comparative analysis of expressed CRN and RXLR effectors from two Plasmopara species causing grapevine and sunflower downy mildew

Robotic Versus Laparoscopic Total Mesorectal Excision (TME) for Sphincter-Saving Surgery: Is There Any Difference in the Transanal TME Rectal Approach?

Standardized single docking, four arms and fully robotic proctectomy for rectal cancer: the key points are the ports and arms placement

Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara Halstedii and their use to identify pathotypes from field isolates

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053

Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance

Whole-genome sequencing of 10 Pseudomonas syringae strains representing different host range spectra

Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection.

Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

RNA-Seq profile of flavescence dorée phytoplasma in grapevine.

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

Genome Sequencing of Ralstonia solanacearum Biovar 3, Phylotype I, Strains Rs-09-161 and Rs-10-244, Isolated from Eggplant and Chili in India.

Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16.

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151

Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on Arabidopsis revealed by association and reverse genetics

High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts

Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex

A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula.

Microsatellite markers for characterization of native and introduced populations of Plasmopara viticola, the causal agent of grapevine downy mildew

'Flavescence doree' phytoplasma genome: a metabolism oriented towards glycolysis and protein degradation

Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Partial Chromosome Sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay