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Adaptation of the gut pathobiont Enterococcus faecalis to deoxycholate and taurocholate bile acids

Francis Repoila , F. Le Bohec , C. Guérin , C. Lacoux , S. Tiwari , et al.
Scientific Reports, 2022, 12 (1), pp.8485. ⟨10.1038/s41598-022-12552-3⟩
Article dans une revue pasteur-03689605v1
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Complete Genome Sequence of the Commensal Streptococcus salivarius Strain JIM8777

Eric Guédon , Christine Delorme , Nicolas Pons , Corinne Cruaud , Valentin Loux , et al.
Journal of Bacteriology, 2011, 193 (18), pp.5024-5025. ⟨10.1128/JB.05390-11⟩
Article dans une revue hal-03649194v1
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Genome-wide identification of genes required for alternative peptidoglycan cross-linking in Escherichia coli revealed unexpected impacts of β-lactams

Henri Voedts , Sean Kennedy , Guennadi Sezonov , Michel Arthur , Jean-Emmanuel Hugonnet
Nature Communications, 2022, 13 (1), pp.7962. ⟨10.1038/s41467-022-35528-3⟩
Article dans une revue hal-03932700v1

The Colibactin-Producing Escherichia coli alters the tumor microenvironment to immunosuppressive lipid overload facilitating colorectal cancer progression and chemoresistance.

Nilmara de Oliveira Alves , Guillaume Dalmasso , Darja Nikitina , Amaury Vaysse , Richard Ruez , et al.
41 ème CECED, Mar 2024, Monptellier, France
Communication dans un congrès hal-04543437v1

Apoptosis and autophagy as a turning point in viral–host interactions: the case of human norovirus and its surrogates

Sean Kennedy , Mélanie Leroux , Alexis Simons , Brice Malve , Marc Devocelle , et al.
Future Virology, 2020, 15 (3), pp.165-182. ⟨10.2217/fvl-2019-0111⟩
Article dans une revue hal-03514157v1
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Aquifer-CO2 leak project : Physicochemical characterization of the CO2 leakage impact on a carbonate shallow freshwater aquifer

Anélia Petit , Adrian Cerepi , Corinne Loisy , Olivier Le Roux , Léna Rossi , et al.
International Journal of Greenhouse Gas Control, 2021, 106, pp.103231. ⟨10.1016/j.ijggc.2020.103231⟩
Article dans une revue hal-03159937v1
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Targeted Metagenomic Databases Provide Improved Analysis of Microbiota Samples

Agnes Baud , Sean P. Kennedy
Microorganisms, 2024, 12 (1), pp.135. ⟨10.3390/microorganisms12010135⟩
Article dans une revue hal-04543569v1
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RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin

Veronica Negro , Evelyne Krin , Sebastian Aguilar Pierlé , Thibault Chaze , Quentin Giai Gianetto , et al.
mBio, 2019, 10 (4), pp.e01173-19. ⟨10.1128/mBio.01173-19⟩
Article dans une revue pasteur-02171194v1
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Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie , Pouyan Ghaffari , Petia Kovatcheva-Datchary , Adil Mardinoglu , Partho Sen , et al.
Cell Metabolism, 2015, 22 (2), pp.320-331. ⟨10.1016/j.cmet.2015.07.001⟩
Article dans une revue hal-02634319v1
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Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad

Laurence Armand-Lefèvre , Emilie Rondinaud , Dimitri Desvillechabrol , Jimmy Mullaert , Olivier Clermont , et al.
Microbial Genomics, 2021, 7 (7), pp.000576. ⟨10.1099/mgen.0.000576⟩
Article dans une revue pasteur-03509051v1
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Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800

Alexey Fomenkov , Priya Dassarma , Sean P. Kennedy , Richard J. Roberts , Shiladitya Dassarma
Microbiology Resource Announcements, 2021, 10 (34), pp.e0061921. ⟨10.1128/MRA.00619-21⟩
Article dans une revue pasteur-03689621v1

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

Damian Rafal Plichta , Agnieszka Sierakowska Juncker , Marcelo Bertalan , Elizabeth Rettedal , Laurent Gautier , et al.
Nature Microbiology, 2016, 1 (11), pp.1-6. ⟨10.1038/NMICROBIOL.2016.152⟩
Article dans une revue hal-01533942v1
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SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis

Stevenn Volant , Pierre Lechat , Perrine Woringer , Laurence Motreff , Pascal Campagne , et al.
BMC Bioinformatics, 2020, 21 (1), pp.345. ⟨10.1186/s12859-020-03666-4⟩
Article dans une revue pasteur-02951458v1
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Quality control of microbiota metagenomics by k-mer analysis

Florian Plaza Onate , Jean-Michel Batto , Catherine Juste , Jehane Fadlallah , Cyrielle Fougeroux , et al.
BMC Genomics, 2015, 16 (1), pp.183. ⟨10.1186/s12864-015-1406-7⟩
Article dans une revue hal-01143359v1
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DAV132, an Adsorbent-Based Product, Protects the Gut Microbiome and Prevents Clostridium difficile Infections During Moxifloxacin Treatments

Jean De Gunzburg , Amine Ghozlane , Annie Ducher , Xavier Marie Duval , Etienne Ruppé , et al.
IDWeek 2015, Infectious Diseases Society of America; hiv medicine association, Oct 2015, San Diego, CA, United States. pp.760, ⟨10.1093/ofid/ofv133.477⟩
Communication dans un congrès pasteur-02552243v1
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Environmental fatty acids enable emergence of infectious Staphylococcus aureus resistant to FASII-targeted antimicrobials

Claire Morvan , David Halpern , Gérald Kénanian , Constantin Hays , Jamila Anba-Mondoloni , et al.
Nature Communications, 2016, 7, pp.12944. ⟨10.1038/ncomms12944⟩
Article dans une revue pasteur-01385175v1
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Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon

William Baiye Abange , Casey Martin , Aubin Joseph Nanfack , Laeticia Grace Yatchou , Nichole Nusbacher , et al.
Scientific Reports, 2021, 11 (1), pp.7666. ⟨10.1038/s41598-021-87368-8⟩
Article dans une revue pasteur-03689626v1
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Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota

Rémi Gschwind , Thierry Fournier , Sean P Kennedy , Vassilis Tsatsaris , Anne-Gaël Cordier , et al.
PLoS ONE, 2020, 15 (8), pp.e0237232. ⟨10.1371/journal.pone.0237232⟩
Article dans une revue pasteur-03689636v1
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Dynamic insights on transcription initiation and RNA processing during bacterial adaptation

Caroline Lacoux , Aymeric Fouquier d'Hérouël , Françoise Wessner-Le Bohec , Nicolas Innocenti , Chantal Bohn , et al.
RNA, 2020, 26 (4), pp.382-395. ⟨10.1261/rna.073288.119⟩
Article dans une revue hal-02464291v1

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Kristoffer Forslund , Falk Hildebrand , Trine Nielsen , Gwen Falony , Emmanuelle Le Chatelier , et al.
Nature, 2015, 528 (7581), pp.266-273. ⟨10.1038/nature15766⟩
Article dans une revue hal-01535324v1
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The Aquifer-CO2Leak project: Numerical modeling for the design of a CO2 injection experiment in the saturated zone of the Saint-Emilion (France) site

Omar Gassara , Audrey Estublier , Bruno Garcia , Sonia Noirez , Adrian Cerepi , et al.
International Journal of Greenhouse Gas Control, 2021, 104, pp.103196. ⟨10.1016/j.ijggc.2020.103196⟩
Article dans une revue hal-03584060v1