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The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal salmonella diarrhea.
Kathrin Endt
,
Bärbel Stecher
,
Samuel Chaffron
,
Emma Slack
,
Nicolas Tchitchek
,
et al.
Article dans une revue
inserm-00520162v1
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Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
B. Stecher
,
Samuel Chaffron
,
R. Kappeli
,
S. Hapfelmeier
,
S. Freedrich
,
et al.
Article dans une revue
hal-01518388v1
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Environmental vulnerability of the global ocean plankton community interactome
S. Chaffron
,
E. Delage
,
M. Budinich
,
D. Vintache
,
N. Henry
,
et al.
2020
Pré-publication, Document de travail
hal-03971893v1
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The Use of Next Generation Sequencing for Improving Food Safety: Translation into practice
Balamurugan Jagadeesan
,
Peter Gerner-Smidt
,
Marc Allard
,
Sébastien Leuillet
,
Anett Winkler
,
et al.
Article dans une revue
hal-01934206v1
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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Hiroto Kaneko
,
Romain Blanc-Mathieu
,
Hisashi Endo
,
Samuel Chaffron
,
Tom Delmont
,
et al.
Article dans une revue
hal-03097258v3
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Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses
Lingjie Meng
,
Hisashi Endo
,
Romain Blanc-Mathieu
,
Samuel Chaffron
,
Rodrigo Hernández-Velázquez
,
et al.
Article dans une revue
hal-03214058v1
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Polar opposites; bacterioplankton susceptibility and mycoplankton resistance to ocean acidification
Storme Zaviar de Scally
,
Samuel Chaffron
,
Thulani Peter Makhalanyane
2020
Pré-publication, Document de travail
hal-02946889v1
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Loss of the benthic life stage in Medusozoa and colonization of the open ocean
Manon Boosten
,
Camille Sant
,
Ophélie da Silva
,
Samuel Chaffron
,
Lionel Guidi
,
et al.
2023
Pré-publication, Document de travail
hal-04252473v1
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Assessing functional diversity of plankton communities from high throughput –omics data
Sakina-Dorothée Ayata
,
E. Faure
,
A.-S. Benoiston
,
O. Silva
,
V. Sonnet
,
et al.
Colloque de Bilan et de Prospective du programme LEFE, Mar 2018, Clermont-Ferrand, France. 2018
Poster de conférence
hal-04021818v1
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A global network of coexisting microbes from environmental and whole-genome sequence data
Samuel Chaffron
,
H. Rehrauer
,
J. Pernthaler
,
C. Von Mering
Article dans une revue
hal-01518389v1
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Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean
Ina Deutschmann
,
Erwan Delage
,
Caterina Giner
,
Marta Sebastián
,
Julie Poulain
,
et al.
Article dans une revue
hal-04407573v1
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Ocean-wide comparisons of mesopelagic planktonic community structures
Janaina Rigonato
,
Marko Budinich
,
Alejandro Murillo
,
Manoela Brandão
,
Juan Pierella Karlusich
,
et al.
Article dans une revue
hal-04184772v1
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Insights into biotic and abiotic modulation of ocean mesopelagic communities
Janaina Rigonato
,
Marko Budinich
,
Alejandro Murillo
,
Manoela Brandão
,
Juan Karlusich
,
et al.
2022
Pré-publication, Document de travail
hal-03166899v1
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Ahmed Zayed
,
James Wainaina
,
Guillermo Dominguez-Huerta
,
Eric Pelletier
,
Jiarong Guo
,
et al.
Article dans une revue
hal-03872940v1
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Determinants of community structure in the global plankton interactome
Gipsi Lima-Mendez
,
Karoline Faust
,
Nicolas Henry
,
Johan Decelle
,
Sébastien Colin
,
et al.
Article dans une revue
hal-01234200v1
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MiBiOmics: An interactive web application for multi-omics data exploration and integration
Johanna Zoppi
,
Jean-François Guillaume
,
Michel Neunlist
,
Samuel Chaffron
2020
Pré-publication, Document de travail
hal-02946891v1
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Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes
Y. Takeuchi
,
Samuel Chaffron
,
M. M. Salcher
,
R. Shimizu-Inatsugi
,
M. J. Kobayashi
,
et al.
Article dans une revue
hal-01518386v1
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Disentangling temporal associations in marine microbial networks
Ina Maria Deutschmann
,
Anders Krabberød
,
Francisco Latorre
,
Erwan Delage
,
Cèlia Marrasé
,
et al.
Article dans une revue
hal-03781901v2
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Luigi Caputi
,
Quentin Carradec
,
Damien Eveillard
,
Amos Kirilovsky
,
Eric Pelletier
,
et al.
Article dans une revue
hal-02999805v1
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Global observation of plankton communities from space
Hiroto Kaneko
,
Hisashi Endo
,
Nicolas Henry
,
Cédric Berney
,
Frédéric Mahé
,
et al.
2022
Pré-publication, Document de travail
hal-03855690v1
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Marta Royo-Llonch
,
Pablo Sánchez
,
Clara Ruiz-González
,
Guillem Salazar
,
Carlos Pedrós-Alió
,
et al.
Article dans une revue
hal-03781908v1
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Species-function relationships shape ecological properties of the human gut microbiome
S. Vieira-Silva
,
G. Falony
,
Y. Darzi
,
G. Lima-Mendez
,
R. Garcia Yunta
,
et al.
Article dans une revue
hal-01518385v1
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Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
N. Delmotte
,
C. Knief
,
Samuel Chaffron
,
G. Innerebner
,
B. Roschitzki
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (38), pp.16428-33. ⟨10.1073/pnas.0905240106⟩
Article dans une revue
hal-01518391v1
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Plankton networks driving carbon export in the oligotrophic ocean
Lionel Guidi
,
Samuel Chaffron
,
Lucie Bittner
,
Damien Eveillard
,
Abdelhalim Larhlimi
,
et al.
Article dans une revue
hal-01275276v1
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Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
B. Stecher
,
R. Robbiani
,
A. W. Walker
,
A. M. Westendorf
,
M. Barthel
,
et al.
Article dans une revue
hal-01518394v1
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STRING 7―recent developments in the integration and prediction of protein interactions
C. Von Mering
,
L. J. Jensen
,
M. Kuhn
,
Samuel Chaffron
,
T. Doerks
,
et al.
Article dans une revue
hal-01518392v1
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Machine learning in marine ecology: an overview of techniques and applications
Peter Rubbens
,
Stephanie Brodie
,
Tristan Cordier
,
Diogo Destro Barcellos
,
Paul Devos
,
et al.
Article dans une revue
hal-04284704v1
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Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula
Yajuan Lin
,
Carly Moreno
,
Adrian Marchetti
,
Hugh Ducklow
,
Oscar Schofield
,
et al.
Article dans une revue
hal-03389081v1
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Maternal prebiotic supplementation impacts colitis development in offspring mice
Amélie Lê
,
Amandine Selle
,
Philippe Aubert
,
Tony Durand
,
Carole Brosseau
,
et al.
Article dans une revue
hal-03930453v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
Benjamin Churcheward
,
Maxime Millet
,
Audrey Bihouée
,
Guillaume Fertin
,
Samuel Chaffron
Article dans une revue
hal-03781944v1
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