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Samuel Blanquart

2
Documents

Présentation

Main research topics - **Phylogenetics**. Phylogenetic modelling (PhD thesis 2007), phylogenetic inferences and ancestral sequence reconstruction (*e.g.* see Blanquart *et al.* 2021). Phylogenetic and functional nalysis of a complex multi-paralog and multidomaine gene familly, the ADAM TS/TSL (PhD student: Olivier Dennler). - **Metagenomics**. Reconstruction of phylogenetic markers from metagenomic data (PhD student, Pierre Pericard). - **Transcriptomics**. Modelling of the gene orthologous splicing structures and prediction of orthologous isoforms (PhD student: Nicolas Guillaudeux. Postdoctoral fellow: Antoine Aymeric-Lorquin, 2018). Evolution of the TRPM8 isoforms in Amniota (Blanquart et al 2019). - **System biology.** Estimating ecosystem metabolisms from sequenced 16S RNA environmental samples (PhD student Arnaud Belcour). PhD Students - **Pierre Pericard**. PhD defense December 2017. BONSAI team, Inria / Lille University. - **Nicolas Guillaudeux**. 2018-2021. PhD defense December 2021. DYLISS team, Inria Rennes University. - **Arnaud Belcour**. Since 2019. DYLISS team, Inria / Rennes University. - **Olivier Dennler**. Since 2019. DYLISS team, Inria / Rennes University. Positions - **Since 2018**. Junior researcher at Inria Rennes - Bretagne Atlantique, DYLISS team (Rennes, France). - **2010 to 2018**. Junior researcher at Inria Lille - Nord Europe, BONSAI team (Lille France). - **2010**. Posdoctoral fellow at ISEM, Molecular evolution team (Montpellier, France). - **2009**. Postdoctoral fellow at EBI, Goldman group (Cambridge, UK). - **2007 to 2009**. Postdoctoral fellow at LIRMM, MAB team (Montepellier, France). - **2004 to 2007**. PhD student at LIRMM, MAB team (Montpellier, France).

Publications

yoann-dufresne
Image document

Reconstruction of full-length 16S rRNA sequences for taxonomic assignment in metagenomics

Pierre Pericard , Yoann Dufresne , Samuel Blanquart , Hélène Touzet
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Communication dans un congrès hal-01574629v1