Samuel Bernard, Institut Camille Jordan

Samuel Bernard. Les mathématiques du cœur. Interstices, INRIA, 2020. ⟨hal-03132429⟩

Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Julie Beaulieu, et al.. The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities. Artificial Life, Massachusetts Institute of Technology Press (MIT Press), 2020, 26 (2), pp.274-306. ⟨10.1162/artl_a_00319⟩. ⟨hal-01735473⟩

Charles Rocabert, Guillaume Beslon, Carole Knibbe, Samuel Bernard. Phenotypic noise and the cost of complexity. Evolution - International Journal of Organic Evolution, Wiley, 2020, ⟨10.1111/evo.14083⟩. ⟨hal-02920356⟩

Jeff E. Mold, Pedro Réu, Axel Olin, Samuel Bernard, Jakob Michaelsson, et al.. Cell generation dynamics underlying naïve T cell homeostasis in adult humans. PLoS Biology, Public Library of Science, 2019, 17 (10), pp.e3000383. ⟨10.1101/635995⟩. ⟨hal-02160888v2⟩

Maggie Yeung, Mehdi Djelloul, Embla Steiner, Samuel Bernard, Mehran Salehpour, et al.. Dynamics of oligodendrocyte generation in multiple sclerosis. Nature, Nature Publishing Group, 2019, pp.538-542. ⟨10.1038/s41586-018-0842-3⟩. ⟨hal-02002274⟩

Hagen B Huttner, Olaf Bergmann, Mehran Salehpour, Raouf El Cheikh, Makoto Nakamura, et al.. Meningioma growth dynamics assessed by radiocarbon retrospective birth dating. EBioMedicine, Elsevier, 2018, 27, pp.176-181. ⟨10.1016/j.ebiom.2017.12.020⟩. ⟨hal-01671339⟩

Pauline Mazzocco, Samuel Bernard, Laurent Pujo-Menjouet. Estimates and impact of lymphocyte division parameters from CFSE data using mathematical modelling.. PLoS ONE, Public Library of Science, 2017, 12 (6), pp.e0179768. ⟨hal-01561667⟩

Apollos Besse, Geoffrey D. Clapp, Samuel Bernard, Franck-Emmanuel Nicolini, Doron Levy, et al.. Stability Analysis of a Model of Interaction Between the Immune System and Cancer Cells in Chronic Myelogenous Leukemia. Bulletin of Mathematical Biology, Springer Verlag, 2017, pp.1-27. ⟨10.1007/s11538-017-0272-7⟩. ⟨hal-01539364⟩

Julien Alleon, Sylvain Bernard, Corentin Le Guillou, Damien Daval, Feriel Skouri-Panet, et al.. Organic molecular heterogeneities can withstand diagenesis. Scientific Reports, Nature Publishing Group, 2017, 7, pp.1508. ⟨10.1038/s41598-017-01612-8⟩. ⟨hal-01528449⟩

Apollos Besse, Thomas Lepoutre, Samuel Bernard. Long-term treatment effects in chronic myeloid leukemia. Journal of Mathematical Biology, Springer Verlag (Germany), 2017, pp.1-26. ⟨10.1007/s00285-017-1098-5⟩. ⟨hal-01447781⟩

Kirsty L Spalding, Samuel Bernard, Erik Näslund, Mehran Salehpour, Göran Possnert, et al.. Impact of fat mass and distribution on lipid turnover in human adipose tissue. Nature Communications, Nature Publishing Group, 2017, 8, pp.15253. ⟨10.1038/ncomms15253⟩. ⟨hal-01561605⟩

Raouf El Cheikh, Samuel Bernard, Nader El Khatib. A multiscale modelling approach for the regulation of the cell cycle by the circadian clock. Journal of Theoretical Biology, Elsevier, 2017, 426, pp.117-125. ⟨10.1016/j.jtbi.2017.05.021⟩. ⟨hal-01561617⟩

Pedro Réu, Azadeh Khosravi, Samuel Bernard, Jeff E. Mold, Mehran Salehpour, et al.. The Lifespan and Turnover of Microglia in the Human Brain. Cell Reports, Elsevier Inc, 2017, 20 (4), pp.779 - 784. ⟨10.1016/j.celrep.2017.07.004⟩. ⟨hal-01572438⟩

Samuel Bernard. Moving the Boundaries of Granulopoiesis Modelling. Bulletin of Mathematical Biology, Springer Verlag, 2016, 78 (12), pp.2358 - 2363. ⟨10.1007/s11538-016-0215-8⟩. ⟨hal-01391393⟩

Samuel Bernard, Fabien Crauste. Optimal linear stability condition for scalar differential equations with distributed delay. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2015, 20 (7), ⟨10.3934/dcdsb.2015.20.1855⟩. ⟨hal-00997528⟩

Olaf Bergmann, Sofia Zdunek, Anastasia Felker, Mehran Salehpour, Kanar Alkass, et al.. Dynamics of Cell Generation and Turnover in the Human Heart. Cell, Elsevier, 2015, 161 (7), pp.1566-1575. ⟨10.1016/j.cell.2015.05.026⟩. ⟨hal-01225091⟩

Mikael Rydén, Mehmet Uzunel, Joanna l. Hård, Erik Borgström, Jeff e. Mold, et al.. Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis. Cell Metabolism, Elsevier, 2015, 22 (3), pp.408-417. ⟨10.1016/j.cmet.2015.06.011⟩. ⟨hal-01225085⟩

Geoffrey D Clapp, Thomas Lepoutre, Raouf El Cheikh, Samuel Bernard, Jérémy Ruby, et al.. Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib.. Cancer Research, American Association for Cancer Research, 2015, 75 (19), pp.4053-62. ⟨10.1158/0008-5472.CAN-15-0611⟩. ⟨hal-01251396⟩

Raouf El Cheikh, Samuel Bernard, Nader El Khatib. Modeling circadian clock-cell cycle interaction effects on cell population growth rates. Journal of Theoretical Biology, Elsevier, 2014, 363, pp.318-331. ⟨10.1016/j.jtbi.2014.08.008⟩. ⟨hal-01055081⟩

Sotiris Prokopiou, Loic Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, et al.. Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study. Computation, MDPI, 2014, 2 (4), pp.159-181. ⟨10.3390/computation2040159⟩. ⟨hal-01074736⟩

Maggie S y Yeung, Sofia Zdunek, Olaf Bergmann, Samuel Bernard, Mehran Salehpour, et al.. Dynamics of oligodendrocyte generation and myelination in the human brain.. Cell, Elsevier, 2014, 159, pp.766-774. ⟨hal-01092151⟩

Hagen B Huttner, Olaf Bergmann, Mehran Salehpour, Attila Rácz, Jemal Tatarishvili, et al.. The age and genomic integrity of neurons after cortical stroke in humans.. Nature Neuroscience, Nature Publishing Group, 2014, pp.801-3. ⟨hal-01092159⟩

Stephan Fischer, Samuel Bernard, Guillaume Beslon, Carole Knibbe. A Model for Genome Size Evolution. Bulletin of Mathematical Biology, Springer Verlag, 2014, 76 (9), pp.2249 - 2291. ⟨10.1007/s11538-014-9997-8⟩. ⟨hal-01090984⟩

Aurélie Ernst, Kanar Alkass, Samuel Bernard, Mehran Salehpour, Shira Perl, et al.. Neurogenesis in the Striatum of the Adult Human Brain.. Cell, Elsevier, 2014, 156 (5), pp.1072-1083. ⟨10.1016/j.cell.2014.01.044⟩. ⟨hal-00952021⟩

Samuel Bernard. From Single-Scale to Multiscale Modelling in Biology. Acta Biotheoretica, Springer Verlag, 2013, 61 (3), pp.291-303. ⟨10.1007/s10441-013-9199-z⟩. ⟨hal-00867564⟩

Kanar Alkass, Hisako Saitoh, Bruce A Buchholz, Samuel Bernard, Gunilla Holmlund, et al.. Analysis of radiocarbon, stable isotopes and DNA in teeth to facilitate identification of unknown decedents.. PLoS ONE, Public Library of Science, 2013, 8 (7), ⟨10.1371/journal.pone.0069597⟩. ⟨hal-00867568⟩

Mikael Rydén, Daniel P Andersson, Samuel Bernard, Kirsty Spalding, Peter Arner. Adipocyte triglyceride turnover and lipolysis in lean and overweight subjects.. Journal of Lipid Research, American Society for Biochemistry and Molecular Biology, 2013, 54 (10), pp.2909-2913. ⟨10.1194/jlr.M040345⟩. ⟨hal-00867570⟩

Kirsty L Spalding, Olaf Bergmann, Kanar Alkass, Samuel Bernard, Mehran Salehpour, et al.. Dynamics of hippocampal neurogenesis in adult humans.. Cell, Elsevier, 2013, 153 (6), pp.1219-1227. ⟨10.1016/j.cell.2013.05.002⟩. ⟨hal-00839513⟩

Olaf Bergmann, Jakob Liebl, Samuel Bernard, Kanar Alkass, Maggie S y Yeung, et al.. The age of olfactory bulb neurons in humans.. Neuron, Elsevier, 2012, 74 (4), pp.634-639. ⟨10.1016/j.neuron.2012.03.030⟩. ⟨hal-00755464⟩

Keith Frayn, Samuel Bernard, Kirsty Spalding, Peter Arner. Adipocyte triglyceride turnover is independently associated with atherogenic dyslipidemia.. Journal of the American Heart Association, Wiley-Blackwell, 2012, 1 (6), pp.e003467. ⟨10.1161/JAHA.112.003467⟩. ⟨hal-00839514⟩

Samuel Bernard. Né pour sentir [Born to smell].. médecine/sciences, EDP Sciences, 2012, 28 (11), pp.937-9. ⟨10.1051/medsci/20122811012⟩. ⟨hal-00767595⟩

Raouf El Cheikh, Thomas Lepoutre, Samuel Bernard. Modeling Biological Rhythms in Cell Populations. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2012, 7 (6), pp.107--125. ⟨10.1051/mmnp/20127606⟩. ⟨hal-00847008⟩

Olaf Bergmann, Sofia Zdunek, Jonas Frisén, Samuel Bernard, Henrik Druid, et al.. Cardiomyocyte renewal in humans.. Circulation Research, American Heart Association, 2012, 110 (1), e17-8; author reply e19-21. ⟨10.1161/CIRCRESAHA.111.259598⟩. ⟨hal-00755465⟩

Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard. Regulation of mammalian cell cycle progression in the regenerating liver. Journal of Theoretical Biology, Elsevier, 2011, 283 (1), pp.103. ⟨10.1016/j.jtbi.2011.05.026⟩. ⟨hal-00719488⟩

Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard. Regulation of mammalian cell cycle progression in the regenerating liver.. Journal of Theoretical Biology, Elsevier, 2011, 283 (1), pp.103-12. ⟨10.1016/j.jtbi.2011.05.026⟩. ⟨hal-00649211⟩

Olaf Bergmann, Sofia Zdunek, Kanar Alkass, Henrik Druid, Samuel Bernard, et al.. Identification of cardiomyocyte nuclei and assessment of ploidy for the analysis of cell turnover.. Experimental Cell Research, Elsevier, 2011, 317 (2), pp.188-94. ⟨10.1016/j.yexcr.2010.08.017⟩. ⟨hal-00542527⟩

Polina Kurbatova, Samuel Bernard, Nikolai Bessonov, Fabien Crauste, Ivan Demin, et al.. HYBRID MODEL OF ERYTHROPOIESIS AND LEUKEMIA TREATMENT WITH CYTOSINE ARABINOSIDE. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2011, 71 (6), pp.2246-2268. ⟨10.1137/100815517⟩. ⟨hal-00538496v2⟩

Peter Arner, Samuel Bernard, Mehran Salehpour, Göran Possnert, Jakob Liebl, et al.. Dynamics of human adipose lipid turnover in health and metabolic disease.. Nature, Nature Publishing Group, 2011, 478 (7367), pp.110-3. ⟨10.1038/nature10426⟩. ⟨hal-00649210⟩

Samuel Bernard, Jonas Frisén, Kirsty L. Spalding. A mathematical model for the interpretation of nuclear bomb test derived 14C incorporation in biological systems. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Elsevier, 2010, 268 (7-8), pp.1295-1298. ⟨10.1016/j.nimb.2009.10.156⟩. ⟨hal-00544517v2⟩

Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, et al.. Adipocyte turnover: relevance to human adipose tissue morphology.. Diabetes, American Diabetes Association, 2010, 59 (1), pp.105-9. ⟨10.2337/db09-0942⟩. ⟨hal-00542528⟩

Samuel Bernard, Branka Cajavec Bernard, Francis Lévi, Hanspeter Herzel. Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Computational Biology, Public Library of Science, 2010, 6 (3), pp.e1000712. ⟨10.1371/journal.pcbi.1000712⟩. ⟨hal-00470302⟩

Olaf Bergmann, Ratan D Bhardwaj, Samuel Bernard, Sofia Zdunek, Fanie Barnabé-Heider, et al.. Evidence for cardiomyocyte renewal in humans.. Science, American Association for the Advancement of Science (AAAS), 2009, 324 (5923), pp.98-102. ⟨10.1126/science.1164680⟩. ⟨hal-00374382⟩

Mostafa Adimy, Samuel Bernard, Jean Clairambault, Fabien Crauste, Stéphane Génieys, et al.. Modélisation de la dynamique de l'hématopoïèse normale et pathologique. Hématologie, John Libbey Eurotext, 2008, 14 (5), pp.339-350. ⟨10.1684/hma.2008.0282⟩. ⟨hal-00750278⟩

Kirsty L Spalding, Erik Arner, Pål O Westermark, Samuel Bernard, Bruce A Buchholz, et al.. Dynamics of fat cell turnover in humans.. Nature, Nature Publishing Group, 2008, 453 (7196), pp.783-7. ⟨10.1038/nature06902⟩. ⟨hal-00372715⟩

Krishnamachari Sriram, Samuel Bernard. Complex dynamics in the Oregonator model with linear delayed feedback. Chaos: An Interdisciplinary Journal of Nonlinear Science, American Institute of Physics, 2008, 18, pp.023126. ⟨10.1063/1.2937015⟩. ⟨hal-00371750⟩

Samuel Bernard, Didier Gonze, Branka Cajavec, Hanspeter Herzel, Achim Kramer. Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Computational Biology, Public Library of Science, 2007, 3 (4), pp.e68. ⟨10.1371/journal.pcbi.0030068⟩. ⟨hal-00371737⟩

Samuel Bernard, Branka Cajavec, Laurent Pujo-Menjouet, Michael C Mackey, Hanspeter Herzel. Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations.. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Royal Society, The, 2006, 364 (1842), pp.1155-70. ⟨10.1098/rsta.2006.1761⟩. ⟨hal-00372717⟩

Branka Cajavec, Hanspeter Herzel, Samuel Bernard. Death of neuronal clusters contributes to variance of age at onset in Huntington's disease. neurogenetics, Springer Verlag, 2006, 7 (1), pp.21--25. ⟨hal-00371760⟩

Samuel Bernard, Hanspeter Herzel. Why do cells cycle with a 24 hour period?. Genome informatics series : proceedings of the .. Workshop on Genome Informatics. Workshop on Genome Informatics., 2006, 17 (1), pp.72--79. ⟨hal-00371755⟩

Catherine Foley, Samuel Bernard, Michael C Mackey. Cost-effective G-CSF therapy strategies for cyclical neutropenia: mathematical modelling based hypotheses.. Journal of Theoretical Biology, Elsevier, 2006, 238 (4), pp.754-63. ⟨10.1016/j.jtbi.2005.06.021⟩. ⟨hal-00542529⟩

Branka Cajavec, Samuel Bernard, Hanspeter Herzel. Aggregation in Huntington's disease: insights through modelling.. Genome informatics series : proceedings of the .. Workshop on Genome Informatics. Workshop on Genome Informatics., 2005, 16 (1), pp.262-71. ⟨hal-00542532⟩

Didier Gonze, Samuel Bernard, Christian Waltermann, Achim Kramer, Hanspeter Herzel. Spontaneous Synchronization of Coupled Circadian Oscillators. Biophysical Journal, Biophysical Society, 2005, 89 (1), pp.120--129. ⟨10.1529/biophysj.104.058388⟩. ⟨hal-00371748⟩

Samuel Bernard, Jacques Bélair, Michael C Mackey. Bifurcations in a white-blood-cell production model.. Comptes Rendus Biologies, Elsevier, 2004, 327 (3), pp.201-10. ⟨hal-00542530⟩

Samuel Bernard, Laurent Pujo-Menjouet, Michael C Mackey. Analysis of cell kinetics using a cell division marker: mathematical modeling of experimental data.. Biophysical Journal, Biophysical Society, 2003, 84 (5), pp.3414-24. ⟨10.1016/S0006-3495(03)70063-0⟩. ⟨hal-00542531⟩

Romain Yvinec, Maria R. d'Orsogna, Tom Chou, Laurent Pujo-Menjouet, Samuel Bernard, et al.. Temps de premier passage pour le modèle de nucléation aléatoire de Becker-Doring. Séminaire du Laboratoire de Mathématiques Appliquées de Compiègne, Feb 2013, Compiègne, France. ⟨hal-03115032⟩

Charles Rocabert, Guillaume Beslon, Carole Knibbe, Samuel Bernard. Phenotypic Noise and the Cost of Complexity. EvoLyon 2019, Nov 2019, Lyon, France. ⟨hal-02402443⟩

Léo Chassiot, Emmanuel Chapron, Yannick Miras, Markus J. Schwab, Patrick Albéric, et al.. Lake Pavin Paleolimnology and Event Stratigraphy. Lake Pavin, history, geology, biogeochemistry and sedimentology of a deep meromictic maar lake, Springer, pp.381 - 406, 2016, ⟨10.1007/978-3-319-39961-4_23⟩. ⟨hal-01447131⟩

Grigory Bordyugov, Pål O Westermark, Ana Korencic, Samuel Bernard, Hanspeter Herzel. Mathematical modeling in chronobiology. Achim Kramer and Martha Merrow. Circadian clocks, Springer, pp.335--357, 2013, ⟨10.1007/978-3-642-25950-0_14⟩. ⟨hal-00839517⟩

Samuel Bernard. Modélisation multi-échelles en biologie. Nicolas Glade and Angélique Stéphanou. Le vivant discret et continu, Éditions Matériologiques, pp.65-89, 2013, Science & Philosophie, 978-2-919694-23-5. ⟨hal-00920523⟩

Samuel Bernard. Distributed delays stabilize negative feedback loops. 2009. ⟨hal-00426202⟩

Samuel Bernard. Structured differential equations and multiscale approaches for human cell population dynamics. Dynamical Systems [math.DS]. Université Claude Bernard Lyon 1, 2017. ⟨tel-01572434v2⟩