Nombre de documents

51

CV de Samuel Alizon


Article dans une revue48 documents

  • Samuel Alizon. Modelling the evolution of how vector-borne parasites manipulate the vector's host choice. Peer Community in Evolutionary Biology, Peer Community in, 2017, pp.100023. <10.24072/pci.evolbiol.100023>. <hal-01560018>
  • Samuel Alizon, Roger Kouyos. Predicting HIV virulence evolution in response to widespread treatment. Peer Community in Evolutionary Biology, Peer Community in, 2017, <10.24072/pci.evolbiol.100013>. <hal-01467624>
  • Emma Saulnier, Olivier Gascuel, Samuel Alizon. Inferring epidemiological parameters from phylogenies using regression-ABC: a comparative study. PLoS Computational Biology, Public Library of Science, 2017, 13 (3), pp.e1005416. <10.1371/journal.pcbi.1005416>. <hal-01567904>
  • Mircea Sofonea, Samuel Alizon, Yannis Michalakis. Exposing the diversity of multiple infection patterns. Journal of Theoretical Biology, Elsevier, 2017, 419, pp.278 - 289. <10.1016/j.jtbi.2017.02.011>. <hal-01567902>
  • Samuel Alizon. A Visionary Pioneer of Parasite Ecology and Evolution. American Naturalist, University of Chicago Press, 2016, 187, pp.ii-iii. <10.1086/686526>. <hal-01567905>
  • Matthew Hartfield, Samuel Alizon. Within-host stochastic emergence dynamics of immune-escape mutants. PLoS Computational Biology, Public Library of Science, 2015, 11 (3), pp.e1004149. <10.1371/journal.pcbi.1004149>. <hal-01567908>
  • Mircea Sofonea, Samuel Alizon, Yannis Michalakis. From within-host interactions to epidemiological competition: a general model for multiple infections. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2015, 370 (1675), pp.20140303. <http://rstb.royalsocietypublishing.org/content/370/1675/20140303>. <10.1098/rstb.2014.0303>. <hal-01571806>
  • Samuel Alizon, Yannis Michalakis. Adaptive virulence evolution: the good old fitness-based approach. Trends Ecol Evol, 2015, 30 (5), pp.248-254. <10.1016/j.tree.2015.02.009>. <hal-01567907>
  • Christophe Fraser, Katrina Lythgoe, Gabriel E Leventhal, George Shirreff, T Deirdre Hollingsworth, et al.. Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective. Science, American Association for the Advancement of Science, 2014, 343 (6177), pp.1243727. <10.1126/science.1243727>. <hal-01567910>
  • Pierre-Olivier Methot, Samuel Alizon. What is a pathogen? Toward a process view of host-parasite interactions. Virulence, Landes Bioscience, 2014, 5 (8), pp.775-85. <10.4161/21505594.2014.960726>. <hal-01567912>
  • Samuel Alizon, S Lion, Carmen L Murall, Jessica L Abbate. Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics. Virulence, Landes Bioscience, 2014, 5 (8), pp.825-827. <10.4161/21505594.2014.976514>. <hal-01567909>
  • Matthew Hartfield, Rowena Bull, Peter A White, Andrew Lloyd, Fabio Luciani, et al.. Evidence that hepatitis C virus genome partly controls infection outcome. Evol Appl, 2014, 7 (5), pp.533-47. <10.1111/eva.12151>. <hal-01567913>
  • Susan V Cousineau, Samuel Alizon. Parasite evolution in response to sex-based host heterogeneity in resistance and tolerance. Journal of Evolutionary Biology, Wiley, 2014, 27 (12), pp.2753-66. <10.1111/jeb.12541>. <hal-01567915>
  • Matthew Hartfield, Samuel Alizon. Epidemiological feedbacks affect evolutionary emergence of pathogens. American Naturalist, University of Chicago Press, 2014, 183 (4), pp.E105-17. <10.1086/674795>. <hal-01567911>
  • Matthew Hartfield, Carmen Lia Murall, Samuel Alizon. Clinical applications of pathogen phylogenies. Trends in Molecular Medicine, Elsevier, 2014, 20 (7), pp.394-404. <10.1016/j.molmed.2014.04.002>. <hal-01567914>
  • Samuel Alizon, Christophe Fraser. Within-host and between-host evolutionary rates across the HIV-1 genome. Retrovirology, BioMed Central, 2013, 10, pp.49. <10.1186/1742-4690-10-49>. <hal-01567922>
  • Matthew Hartfield, Samuel Alizon. Introducing the outbreak threshold in epidemiology. PLoS Pathogens, Public Library of Science, 2013, 6, pp.e1003277. <10.1371/journal.ppat.1003277>. <hal-01567921>
  • Christel Kamp, Mathieu Moslonka-Lefebvre, Samuel Alizon. Epidemic spread on weighted networks. PLoS Computational Biology, Public Library of Science, 2013, 9 (12), pp.e1003352. <10.1371/journal.pcbi.1003352>. <hal-01567923>
  • George Shirreff, Samuel Alizon, Anne Cori, Huldrych F Guenthard, Oliver Laeyendecker, et al.. How effectively can HIV phylogenies be used to measure heritability?. Evol Med Public Health, 2013, 2013 (1), pp.209-24. <10.1093/emph/eot019>. <hal-01567924>
  • Samuel Alizon. Co-infection and super-infection models in evolutionary epidemiology. Interface Focus, Royal Society publishing, 2013, 3, pp.20130031. <10.1098/rsfs.2013.0031>. <hal-01567919>
  • Samuel Alizon, Jacobus C Roode, Yannis Michalakis. Multiple infections and the evolution of virulence. Ecol Lett, 2013, 16 (4), pp.556-567. <10.1111/ele.12076>. <hal-01567918>
  • Samuel Alizon. On the limits of interpreting some plastic responses through a cooperator/cheater prism. A comment on Harrison. Journal of Evolutionary Biology, Wiley, 2013, 26 (9), pp.2051-6. <10.1111/jeb.12199>. <hal-01567920>
  • Samuel Alizon. Parasite co-transmission and the evolutionary epidemiology of virulence. Evolution, Wiley, 2013, 67 (4), pp.921-933. <10.1111/j.1558-5646.2012.01827.x>. <hal-01567917>
  • Samuel Alizon, Carsten Magnus. Modelling the course of an HIV infection: Insights from ecology and evolution. Viruses, MDPI, 2012, 4 (10), pp.1984-2013. <10.3390/v4101984>. <hal-01567926>
  • Mathieu Moslonka-Lefebvre, Sebastian Bonhoeffer, Samuel Alizon. Weighting for sex acts to understand the spread of STI on networks. Journal of Theoretical Biology, Elsevier, 2012, 311, pp.46-53. <10.1016/j.jtbi.2012.06.031>. <hal-01567925>
  • Patrick Abbot, Jun Abe, John Alcock, Samuel Alizon, Joao a C Alpedrinha, et al.. Inclusive fitness theory and eusociality. Nature, Nature Publishing Group, 2011, 471 (7339), pp.E1-4. <10.1038/nature09831>. <hal-01567932>
  • Samuel Alizon, S Lion. Within-host parasite cooperation and the evolution of virulence. Proc R Soc Lond B, 2011, 278 (1725), pp.3738-3747. <10.1098/rspb.2011.0471>. <hal-01567928>
  • Jacobus C Roode, C Lopez Fernandez Castillejo, T Faits, Samuel Alizon. Virulence evolution in response to anti-infection resistance: toxic food plants can select for virulent parasites of monarch butterflies. Journal of Evolutionary Biology, Wiley, 2011, 24 (4), pp.712-22. <10.1111/j.1420-9101.2010.02213.x>. <hal-01567929>
  • Samuel Alizon, Yannis Michalakis. The transmission-virulence trade-off and superinfection: comments to smith. Evolution, Wiley, 2011, 65 (12), pp.3633-8. <10.1111/j.1558-5646.2011.01432.x>. <hal-01567930>
  • Troy Day, Samuel Alizon, Nicole Mideo. Bridging scales in the evolution of infectious disease life histories: theory. Evolution, Wiley, 2011, 65 (12), pp.3448-61. <10.1111/j.1558-5646.2011.01394.x>. <hal-01567927>
  • Samuel Alizon, Fabio Luciani, Roland R. Regoes. Epidemiological and clinical consequences of within-host evolution. Trends in Microbiology, Elsevier, 2011, 19 (1), pp.24-32. <10.1016/j.tim.2010.09.005>. <hal-01567931>
  • Samuel Alizon, Viktor Wyl, Tanja Stadler, Roger D. Kouyos, Sabine Yerly, et al.. Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathogens, Public Library of Science, 2010, 6 (9), pp.e1001123. <10.1371/journal.ppat.1001123>. <hal-01567934>
  • R Froissart, J Doumayrou, F Vuillaume, Samuel Alizon, Y Michalakis. The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies. Philos. Trans. R. Soc. B, 2010, 365 (1548), pp.1907-18. <10.1098/rstb.2010.0068>. <hal-01567933>
  • Samuel Alizon, Barbara Boldin. Within-host viral evolution in a heterogeneous environment. Insights into the HIV co-receptor switch. Journal of Evolutionary Biology, Wiley, 2010, 23, pp.2625-2635. <10.1111/j.1420-9101.2010.02139.x>. <hal-01567935>
  • Fabio Luciani, Samuel Alizon. The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus. PLoS Computational Biology, Public Library of Science, 2009, 5 (11), pp.e1000565. <10.1371/journal.pcbi.1000565>. <hal-01567937>
  • Samuel Alizon, Amy Hurford, Nicole Mideo, Minus Van Baalen. Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future. Journal of Evolutionary Biology, Wiley, 2009, 22, pp.245-259. <10.1111/j.1420-9101.2008.01658.x>. <hal-01567938>
  • Samuel Alizon. The Price equation framework to study disease within-host evolution. Journal of Evolutionary Biology, Wiley, 2009, 22, pp.1123-1132. <10.1111/j.1420-9101.2009.01726.x>. <hal-01567936>
  • Nicole Mideo, Samuel Alizon, Troy Day. Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases. Trends Ecol Evol, 2008, 23 (9), pp.511-517. <10.1016/j.tree.2008.05.009>. <hal-01567939>
  • Samuel Alizon, Michal Kucera, Vincent A. A. Jansen. Competition between cryptic species explains variations in rates of lineage evolution. Proc Natl Acad Sci USA, 2008, 105 (34), pp.12382-12386. <10.1073/pnas.0805039105>. <hal-01567944>
  • Troy Day, Nicole Mideo, Samuel Alizon. Why is HIV not vector-borne?. Evol App, 2008, 1, pp.17-27. <10.1111/j.1752-4571.2007.00014.x>. <hal-01567945>
  • Samuel Alizon, P Taylor. Empty sites can promote altruistic behaviour. Evolution, Wiley, 2008, 62 (6), pp.1335-1344. <10.1111/j.1558-5646.2008.00369.x>. <hal-01567940>
  • Samuel Alizon. Decreased overall virulence in co-infected hosts leads to the persistence of virulent parasites. American Naturalist, University of Chicago Press, 2008, 172 (2), pp.E67-E79. <10.1086/588077>. <hal-01567946>
  • Samuel Alizon. Transmission-recovery trade-offs to study parasite evolution. American Naturalist, University of Chicago Press, 2008, 172 (3), pp.E113-E121. <10.1086/589892>. <hal-01567943>
  • Samuel Alizon, Minus Van Baalen. Multiple infections, immune dynamics and virulence evolution. American Naturalist, University of Chicago Press, 2008, 172 (4), pp.E150-E158. <10.1086/590958>. <hal-01567942>
  • Samuel Alizon, Minus Van Baalen. Acute or Chronic? Within-host models with immune dynamics, infection outcome and parasite evolution. American Naturalist, University of Chicago Press, 2008, 172 (6), pp.E244-E256. <10.1086/592404>. <hal-01567941>
  • Samuel Alizon, Minus Van Baalen. Transmission-virulence trade-offs in vector-borne diseases. Theoretical Population Biology, Elsevier, 2008, 74, pp.6 - 15. <10.1016/j.tpb.2008.04.003>. <hal-01396035>
  • Romain Gallet, Samuel Alizon, Pierre-Arnaud Comte, Arnaud Gutierrez, Frantz Depaulis, et al.. Predation and disturbance interact to shape prey species diversity. American Naturalist, University of Chicago Press, 2007, 170, pp.143-154. <10.1086/518567>. <hal-01567947>
  • Samuel Alizon, Minus Van Baalen. Emergence of a convex trade-off between transmission and virulence. American Naturalist, University of Chicago Press, 2005, 165 (6), pp.E155-E167. <10.1086/430053>. <hal-01567948>

Chapitre d'ouvrage3 documents

  • C. L. Murall, J. L. Abbate, M. Puelma Touzel, E. Allen-Vercoe, Samuel Alizon, et al.. Invasions of Host-Associated Microbiome Networks. Research, BT - Advances in Ecological. Networks of Invasion: Empirical Evidence and Case Studies, 57, Academic Press, 2017, Advances in Ecological Research, <10.1016/bs.aecr.2016.11.002>. <hal-01567903>
  • Pierre-Olivier Methot, Samuel Alizon. Emerging diseases and the evolution of virulence: the case of the Spanish influenza pandemic. Marc Silberstein and Gérard Lambert and Philippe Huneman. Disease, Classification, and Evidence. New Essays in the Philosophy of Medicine, 7, Springer, pp.93-130, 2015, History, Philosophy and Theory of the Life Sciences, <10.1007/978-94-017-8887-8_5>. <hal-01567906>
  • Samuel Alizon. Evolution of Infectious Disease Virulence. Jonathan Losos. Evolutionary biology, Oxford Bibliographies, 2014, <10.1093/OBO/9780199941728-0018>. <hal-01567916>