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CoCAS: a ChIP-on-chip analysis suite.

Touati Benoukraf , Pierre Cauchy , Romain Fenouil , Adrien Jeanniard , Frederic Koch , et al.
Bioinformatics, 2009, 25 (7), pp.954-5. ⟨10.1093/bioinformatics/btp075⟩
Article dans une revue hal-00408403v1
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Explore, edit and leverage genomic annotations using Python GTF toolkit

Fabrice Lopez , Guillaume Charbonnier , Yasmina Kermezli , Mohamed Belhocine , Quentin Ferré , et al.
Article dans une revue hal-02078147v1
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Divergent transcription is associated with promoters of transcriptional regulators

C. Lepoivre , M. Belhocine , A. Bergon , A. Griffon , M. Yammine , et al.
BMC Genomics, 2013, 14, pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue hal-02192888v1

TCR beta allelic exclusion in dynamical models of V(D)J recombination based on allele independence.

Etienne Farcot , Marie Bonnet , Sébastien Jaeger , Salvatore Spicuglia , Bastien Fernandez , et al.
Journal of Immunology, 2010, 185 (3), pp.1622-32. ⟨10.4049/jimmunol.0904182⟩
Article dans une revue hal-00553572v1

TCRalpha enhancer activation occurs via a conformational change of a pre-assembled nucleo-protein complex

Salvatore Spicuglia
EMBO Journal, 2000, 19 (9), pp.2034--2045. ⟨10.1093/emboj/19.9.2034⟩
Article dans une revue hal-01614969v1

Definition of a T-Cell Receptor beta Gene Core Enhancer of V(D)J Recombination by Transgenic Mapping

R. K. Tripathi , N. Mathieu , Salvatore Spicuglia , D. Payet , C. Verthuy , et al.
Molecular and Cellular Biology, 2000, 20 (1), pp.42--53. ⟨10.1128/MCB.20.1.42-53.2000⟩
Article dans une revue hal-01614968v1

Potassium permanganate as a probe to map DNA–protein interactions in vivo

Salvatore Spicuglia , Sanjeev Kumar , Lionel Chasson , Dominique Payet-Bornet , Pierre Ferrier
Journal of Biochemical and Biophysical Methods, 2004, 59 (2), pp.189--194. ⟨10.1016/j.jbbm.2004.01.012⟩
Article dans une revue istex hal-01614965v1

The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

Eileen Furlong , Sitanshu Gakkhar , Nina Gasparoni , Gilles Gasparoni , Daniel H. Geschwind , et al.
Cell, 2016, 167 (5), pp.1145--1149. ⟨10.1016/j.cell.2016.11.007⟩
Article dans une revue hal-01614945v1
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A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation

Wiam Saadi , Yasmina Kermezli , Lan Dao , Evelyne Mathieu , David Santiago-Algarra , et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-41247-5⟩
Article dans une revue hal-02078114v1

Extensive molecular mapping of TCR / - and TCR -involved chromosomal translocations reveals distinct mechanisms of oncogene activation in T-ALL

S. Le Noir , R. Ben Abdelali , M. Lelorch , J. Bergeron , S. Sungalee , et al.
Blood, 2012, 120 (16), pp.3298--3309. ⟨10.1182/blood-2012-04-425488⟩
Article dans une revue hal-01614958v1

CD8(+) T Cells from Human Neonates Are Biased toward an Innate Immune Response

Ariel O. Galindo-Albarran , Oscar H. Lopez-Portales , Darely Y. Gutierrez-Reyna , Otoniel Rodriguez-Jorge , Jose Antonio Sanchez-Villanueva , et al.
Cell Reports, 2016, 17 (8), pp.2151-2160. ⟨10.1016/j.celrep.2016.10.056⟩
Article dans une revue hal-01460128v1

Regulation of V(D)J recombination.

S. Spicuglia , D.M. Franchini , P. Ferrier
Current Opinion in Immunology, 2006, 18, pp.158-163
Article dans une revue hal-00080286v1

Duality of Enhancer Functioning Mode Revealed in a Reduced TCR{beta} Gene Enhancer Knockin Mouse Model.

Marie Bonnet , Fang Huang , Touati Benoukraf , Olivier Cabaud , Christophe Verthuy , et al.
Journal of Immunology, 2009, epub ahead of print. ⟨10.4049/jimmunol.0902179⟩
Article dans une revue hal-00439891v1
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Epromoters function as a hub to recruit key transcription factors required for the inflammatory response

David Santiago-Algarra , Charbel Souaid , Himanshu Singh , Lan T M Dao , Saadat Hussain , et al.
Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-26861-0⟩
Article dans une revue hal-03513051v1
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A comprehensive catalog of LncRNAs expressed in T-cell acute lymphoblastic leukemia

Yasmina Kermezli , Wiam Saadi , Mohamed Belhocine , E. L. Mathieu , Marc-Antoine Garibal , et al.
Leukemia & lymphoma, 2019, pp.1-13. ⟨10.1080/10428194.2018.1551534⟩
Article dans une revue hal-02078367v1
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IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8+ T Cells

Darely Gutiérrez-Reyna , Alejandra Cedillo-Baños , Linda Kempis-Calanis , Oscar Ramírez-Pliego , Lisa Bargier , et al.
Frontiers in Immunology, 2020, 11, ⟨10.3389/fimmu.2020.01089⟩
Article dans une revue hal-02935693v1
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Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4 + T cell activation

Otoniel Rodríguez-Jorge , Linda Kempis-Calanis , Wassim Abou-Jaoudé , Darely Gutiérrez-Reyna , Céline Hernandez , et al.
Science Signaling, 2019, 12 (577), pp.eaar3641. ⟨10.1126/scisignal.aar3641⟩
Article dans une revue hal-02154906v1

Reversal of microRNA-150 silencing disadvantages crizotinib-resistant NPM-ALK(+) cell growth

Coralie Hoareau-Aveilla , Thibaud Valentin , Camille Daugrois , Cathy Quelen , Géraldine Mitou , et al.
Journal of Clinical Investigation, 2015, 125 (9), pp.3505--3518. ⟨10.1172/JCI78488⟩
Article dans une revue hal-01614947v1

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

R. Fenouil , P. Cauchy , F. Koch , N. Descostes , J. Z. Cabeza , et al.
Genome Research, 2012, 22 (12), pp.2399--2408. ⟨10.1101/gr.138776.112⟩
Article dans une revue hal-01614960v1

Novel CD28-Responsive Enhancer Activated by CREB/ATF and AP-1 Families in the Human Interleukin-2 Receptor -Chain Locus

J.-H. Yeh , P. Lecine , J. A. Nunes , Salvatore Spicuglia , P. Ferrier , et al.
Molecular and Cellular Biology, 2001, 21 (14), pp.4515--4527. ⟨10.1128/MCB.21.14.4515-4527.2001⟩
Article dans une revue hal-01614967v1
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Divergent transcription is associated with promoters of transcriptional regulators.

Cyrille Lepoivre , Mohamed Belhocine , Aurélie Bergon , Aurélien Griffon , Miriam Yammine , et al.
BMC Genomics, 2013, 14 (1), pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue inserm-00924629v1
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Characterisation of Genome-Wide PLZF/RARA Target Genes

Salvatore Spicuglia , Christelle Vincent-Fabert , Touati Benoukraf , Guillaume Tibéri , Andrew J Saurin , et al.
PLoS ONE, 2011, 6 (9), pp.e24176. ⟨10.1371/journal.pone.0024176⟩
Article dans une revue hal-00674513v1
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OLOGRAM : Determining significance of total overlap length between genomic regions sets

Q Ferré , G. Charbonnier , N Sadouni , F Lopez , Y Kermezli , et al.
Article dans une revue hal-02383808v1

Chromatin Remodeling by the T Cell Receptor (Tcr)-β Gene Enhancer during Early T Cell Development: Implications for the Control of Tcr-β Locus Recombination

Noëlle Mathieu , William M. Hempel , Salvatore Spicuglia , Christophe Verthuy , Pierre Ferrier
Journal of Experimental Medicine, 2000, 192 (5), pp.625--636. ⟨10.1084/jem.192.5.625⟩
Article dans une revue hal-01614970v1
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Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene

Jaafar Alomairi , Anne Molitor , Nori Sadouni , Saadat Hussain , Magali Torres , et al.
PLoS ONE, 2020, 15 (5), pp.e0233191. ⟨10.1371/journal.pone.0233191⟩
Article dans une revue hal-02773600v1
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Epigenetic analysis of patients with T-ALL identifies poor outcomes and a hypomethylating agent-responsive subgroup

Aurore Touzart , Anand Mayakonda , Charlotte Smith , Joschka Hey , Reka Toth , et al.
Science Translational Medicine, 2021, 13 (595), pp.eabc4834. ⟨10.1126/scitranslmed.abc4834⟩
Article dans une revue hal-03282998v1

TCRα rearrangements identify a subgroup of NKL-deregulated adult T-ALLs associated with favorable outcome

P Villarese , C Lours , A Trinquand , S Le Noir , M Belhocine , et al.
Article dans une revue hal-01614943v1
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Divergent transcription is associated with promoters of transcriptional regulators

C. Lepoivre , M. Belhocine , A. Bergon , A. Griffon , M. Yammine , et al.
BMC Genomics, 2013, 14, pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue hal-02191624v1
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Transcriptional regulation by promoters with enhancer function

Salvatore Spicuglia , Lan T.M. Dao
Article dans une revue hal-01816890v1
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Epromoters are new players in the regulatory landscape with potential pleiotropic roles

Juliette Malfait , Jing Wan , Salvatore Spicuglia
Article dans une revue hal-04200857v1