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Book of abstracts of the ARTIFACTZ Workshop Artificial intelligence for characterizing plankton traits from images

 Frédéric Maps , Jean-Olivier Irisson , Sakina-Dorothée Ayata
2019
Proceedings/Recueil des communications hal-02862387v1
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Modelling the effect of temperature on phytoplankton growth across the global ocean

 Ghjuvan Micaelu Grimaud , Valérie Le Guennec , Sakina-Dorothée Ayata , Francis Mairet , Antoine Sciandra , et al.
8th Vienna International Conference on Mathematical Modelling — MATHMOD 2015, 2015, Vienna, Austria. ⟨10.1016/j.ifacol.2015.05.059⟩
Communication dans un congrès hal-01245890v1

Distribution and biogeography of the copepods in the mediterranean sea

 Fabio Benedetti , Gabriel Reygondeau , Jean-Olivier Irisson , Stéphane Gasparini , Philippe Koubbi , et al.
CIESM, 2013, Marseille, France. 2013
Poster de conférence hal-04018670v1

Impact of copepod diversity on carbon export using imaging and environmental data

 Margaux Perhirin , Jessica Godfrey , Hannah Gossner , Amy E. Maas , R Johnson , et al.
ASLO Ocean Science Meeting, Feb 2022, Hawaii (on line), United States
Communication dans un congrès hal-04230337v1
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Trait‐based approach using in situ copepod images reveals contrasting ecological patterns across an Arctic ice melt zone

 Laure Vilgrain , Frederic Maps , Marc Picheral , Marcel Babin , Cyril Aubry , et al.
Limnology and Oceanography, 2021, 66 (4), pp.1155-1167. ⟨10.1002/lno.11672⟩
Article dans une revue hal-03119903v1
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Length, width, shape regularity, and chain structure: time series analysis of phytoplankton morphology from imagery

 Virginie Sonnet , Lionel Guidi , Colleen Mouw , Gavino Puggioni , Sakina-Dorothée Ayata
Limnology and Oceanography, 2022, 67 (8), pp.1850-1864. ⟨10.1002/lno.12171⟩
Article dans une revue hal-03772861v1

Toward a dynamic biogeochemical division of the Mediterranean Sea in a context of global climate change

 Gabriel Reygondeau , Jean-Olivier Irisson , Cécile Guieu , S. Gasparini , Sakina-Dorothée Ayata , et al.
EGU General Assembly, 2013, Vienna, Austria
Communication dans un congrès hal-04026412v1

Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research

 Guillem Chust , Meike Vogt , Fabio Benedetti , Teofil Nakov , Sébastien Villéger , et al.
Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩
Article dans une revue hal-01545318v1

Using species functional traits to explore the potential impacts of climate change(s) on plankton functional diversity

 Fabio Benedetti , Sakina-Dorothée Ayata , François Guilhaumon , Jean-Olivier Irisson , Fanny Adloff
IMBeR, 2019, Brest, France
Communication dans un congrès hal-04026434v1

Damping effect of flexible phytoplanktonic C:N ratio on primary production at basin-scale

 Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Laure Resplandy , Alessandro Tagliabue , et al.
EGU General Assembly 2013, Apr 2013, Vienne, Austria. pp.9043
Communication dans un congrès hal-00833015v1
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Investigating uncertainties in zooplankton composition shifts under climate change scenarios in the Mediterranean Sea

 Fabio Benedetti , François Guilhaumon , Fanny Adloff , Sakina-Dorothée Ayata
Ecography, 2017, ⟨10.1111/ecog.02434⟩
Article dans une revue hal-01495992v1

Fat chance : estimating the lipid content of Arctic zooplankton from in situ images

 Frédéric Maps , Alexandra Mercier , Eric C Orenstein , Laure Vilgrain , Jean-Olivier Irisson , et al.
SFE2 GFÖ EEF 2022 Conference, SFE2 GFÖ EEF, Nov 2022, Metz, France
Communication dans un congrès hal-04230315v1
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Océans et intelligence artificielle, un couple d'avenir

 Sakina-Dorothée Ayata
Christophe Prazuck. 30 questions sur l’océan: La Sorbonne et la mer, Sorbonne Université Presses, 2022, Sorbonne Essais, 979-10-231-0734-0
Chapitre d'ouvrage hal-03993688v1

Mediterranean biodiversity (from phytoplankton to top predators) and present threats

 Gabriel Reygondeau , Camille Albouy , Tarek Hattab , Fabio Benedetti , Jean-Olivier Irisson , et al.
ICES, 2014, A Coruña, Spain
Communication dans un congrès hal-04026418v1
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Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea

 Fabio Benedetti , Sakina-Dorothée Ayata , Jean-Olivier Irisson , Fanny Adloff , François Guilhaumon
Diversity and Distributions, 2019, Conservation Biogeography in a changing climate, 25 (4), pp.568-581. ⟨10.1111/ddi.12857⟩
Article dans une revue hal-02108192v1

Morphological traits of zooplankton reveal ecological patterns along ice melt dynamics in the Arctic

 Laure Vilgrain , Jean-Olivier Irisson , Sakina-Dorothée Ayata , Marc Picheral , Marcel Babin , et al.
Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region
Communication dans un congrès hal-04026431v1
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Morphological diversity increases with decreasing resources along a zooplankton time series

 Miriam Beck , Caroline Cailleton , Lionel Guidi , Corinne Desnos , Laetitia Jalabert , et al.
Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2011), ⟨10.1098/rspb.2023.2109⟩
Article dans une revue hal-04385533v1
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Meroplankton distribution and its relationship to coastal mesoscale hydrological structure in the northern Bay of Biscay (NE Atlantic)

 Sakina-Dorothée Ayata , Robin Stolba , Thierry Comtet , Éric Thiébaut
Journal of Plankton Research, 2011, 33 (8), pp.1193-1211. ⟨10.1093/plankt/fbr030⟩
Article dans une revue hal-00854762v1

Assessing functional diversity of plankton communities from high throughput –omics data

 Sakina-Dorothée Ayata , E. Faure , A.-S. Benoiston , O. Silva , V. Sonnet , et al.
Colloque de Bilan et de Prospective du programme LEFE, Mar 2018, Clermont-Ferrand, France. 2018
Poster de conférence hal-04021818v1
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Mixotrophic protists display contrasted biogeographies in the global ocean

 Emile Faure , Fabrice Not , Anne-Sophie Benoiston , Karine Labadie , Lucie Bittner , et al.
The International Society of Microbiologial Ecology Journal, 2019, 13 (4), pp.1072-1083. ⟨10.1038/s41396-018-0340-5⟩
Article dans une revue hal-02182433v1
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Phytoplankton plasticity drives large variability in carbon fixation efficiency

 Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Laure Resplandy , Alessandro Tagliabue , et al.
Geophysical Research Letters, 2014, 41 (24), pp.8994-9000. ⟨10.1002/2014gl062249⟩
Article dans une revue hal-01996384v1
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Towards omics-based predictions of planktonic functional composition from environmental data

 Emile Faure , Sakina-Dorothée Ayata , Lucie Bittner
Nature Communications, 2021, 12, pp.4361. ⟨10.1038/s41467-021-24547-1⟩
Article dans une revue hal-03290250v1

Impact of mesozooplankton diversity on the ecosystem functioning in the Sargasso Sea, using molecular and imaging data

 Margaux Perhirin , Sakina-Dorothée Ayata , Hannah Gossner , Jessica Godfrey , Leocadio Blanco-Bercial
SFE2 GFÖ EEF 2022 Conference, Nov 2022, Metz, France
Communication dans un congrès hal-04230320v1
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Functional trait-based approaches as a common framework for freshwater and marine ecologists

 Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle , et al.
11th Symposium for European Freshwater Sciences (SEFS), Jun 2019, Zagreb, Croatia
Poster de conférence hal-03232606v1
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Functional trait-based approaches as a common framework for aquatic ecologists

 Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle , et al.
Limnology and Oceanography, 2021, 66 (3), pp.965-994. ⟨10.1002/lno.11655⟩
Article dans une revue hal-02996072v1

Bloom triggering in the Southern Ocean : Sensitivity to biological parameters

 Sakina-Dorothée Ayata , Joan Llort , Alessandro Tagliabue , Marina Lévy
Workshop TANGGO, 2012, Grenoble, France
Communication dans un congrès hal-00848378v1
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Copepods' true colors: astaxanthin pigmentation as an indicator of fitness

 Laure Vilgrain , Frédéric Maps , Sünnje Basedow , Emilia Trudnowska , Mohammed‐Amin Madoui , et al.
Ecosphere, 2023, 14 (6), ⟨10.1002/ecs2.4489⟩
Article dans une revue hal-04385576v1

Projected shifts in copepod surface communities in the Mediterranean Sea under several climate change scenarios

 Fabio Benedetti , François Guilhaumon , Fanny Adloff , Jean-Olivier Irisson , Sakina-Dorothée Ayata
Ocean Sciences Meeting, 2016, New Orleans, United States
Communication dans un congrès hal-04026400v1

Le deep learning comme extracteur de caractéristiques morphologiques: Application à l’écologie du plancton marin

 Jean-Oliver Irisson , Laure Vilgrain , Caroline Cailleton , Marc Picheral , Frederic Maps , et al.
Imaginecology, 2020, Online, Unknown Region
Communication dans un congrès hal-04026444v1

Does larval supply explain the low proliferation of the invasive gastropod Crepidula fornicata in a tidal estuary?

 François Rigal , Frédérique Viard , Sakina-Dorothée Ayata , Thierry Comtet
Biological Invasions, 2010, 12 (9), pp.3171-3186. ⟨10.1007/s10530-010-9708-9⟩
Article dans une revue istex hal-01218851v1
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