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Hybrid metabolic modeling to identify new control strategies of living organisms

 Sabine Peres
Hybrid models and methods in systems medicine, Jul 2022, Paris, France
Communication dans un congrès hal-03903353v1

Analysis of metabolic networks using elementary flux modes

 Sabine Pérès
Advances in systems and synthetic biology, Mar 2013, La Colle-sur-Loup, France. pp.165--170
Communication dans un congrès hal-00946692v1

Special Issue on “Frontiers in Connecting Steady-State and Dynamic Approaches for Modelling Cell Metabolic Behavior”

 Sabine Peres , Mario Jolicoeur
Processes, 2022, 10 (8), pp.1612. ⟨10.3390/pr10081612⟩
Article dans une revue hal-03903344v1

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

 Cécile Fleury , Marie Francoise M. F. Gautier , Pierre Larmande , Sabine Pérès , Frédéric F. de Lamotte , et al.
Séminaire Génomique Végétale, Mar 2010, Pont-Royal en Provence, France
Communication dans un congrès hal-02752562v1

Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation

 Sabine Pérès , Liza L. Felicori , Franck Molina
PLoS ONE, 2013, 8 (10), ⟨10.1371/journal.pone.0076143⟩
Article dans une revue hal-01709661v1
Image document

How important is thermodynamics for identifying elementary flux modes?

 Sabine Pérès , Mario Jolicœur , Cecile Moulin , Philippe Dague , Stefan Schuster
PLoS ONE, 2017, 12 (2), ⟨10.1371/journal.pone.0171440⟩
Article dans une revue hal-01709642v1

Computing EFMs consistent with equilibrium constants

 Sabine Pérès , Philippe Dague , Mario Jolicœur , Stefan Schuster
Metabolic Pathway Analysis MPA 2017, Jul 2017, Bozeman, United States
Communication dans un congrès hal-01676892v1

Answer set programming to compute constraint elementary flux modes

 Maxime Mahout , Laurent Simon , Sabine Peres
Computational Methods in System Biology, Sep 2021, Bordeaux, France
Communication dans un congrès hal-03903363v1

A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by-product

 Xinhe Zhao , Mayssa Kasbi , Jingkui Chen , Sabine Pérès , Mario Jolicœur
Biotechnology and Bioengineering, 2017, 114 (12), pp.2907 - 2919. ⟨10.1002/bit.26393⟩
Article dans une revue hal-01709638v1

Modulating mitochondria horsepower for biotechnological applications

 Jorgelindo da Veiga Moreira , Laurent Schwartz , Sabine S. Peres
Metabolic Pathway Analysis 2019, Aug 2019, Riga, Latvia
Communication dans un congrès hal-03230443v1
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A kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition

 Xiaojie Ren , Jean-Sébastien Deschênes , Réjean Tremblay , Sabine Pérès , Mario Jolicœur
Microbial Cell Factories, 2019, 18 (1), ⟨10.1186/s12934-019-1163-4⟩
Article dans une revue hal-02531282v1

SAT-Based Metabolics Pathways Analysis without Compilation

 Sabine Pérès , Morterol Martin , Laurent Simon
CMSB 2014, Nov 2014, Manchester, United Kingdom
Communication dans un congrès hal-01108840v1

Metabolic view of tumor growth: a kinetic model to screen potential therapeutic targets

 Sabine Pérès
Computational systems biology for cancer, Jan 2018, Paris, France
Communication dans un congrès hal-01802079v1

HSM a reduced model of Central Carbon Metabolism: a dynamical approach

 Bertrand Beauvoit , Sophie Colombie , Razanne Issa , Jean-Pierre Mazat , Christine Nazaret , et al.
advances in Systems and Synthetic Biology, Mar 2017, Lyon, France
Communication dans un congrès hal-01709748v1
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The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect

 Jorgelindo da Veiga Moreira , Minoo Hamraz , Mohammad Abolhassani , Erwan Bigan , Sabine Pérès , et al.
Metabolites, 2016, 6 (4), 12 p. ⟨10.3390/metabo6040033⟩
Article dans une revue hal-01417967v1

Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells

 Bertrand Beauvoit , Sophie Colombie , Razanne Issa , Jean-Pierre Mazat , Christine Nazaret , et al.
advances in Systems and Synthetic Biology, Mar 2016, Evry, France
Communication dans un congrès hal-01709760v1

Mycotoxin fumonisin B-1 selectively down-regulates the basal IL-8 expression in pig intestine: in vivo and in vitro studies

 S Bouhet , E Le Dorze , Sabine Pérès , Jm Fairbrother , Isabelle P. Oswald
Food and Chemical Toxicology, 2006, 44 (10), pp.1768-1773
Article dans une revue hal-02665625v1
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Combining Kinetic and Constraint-Based Modelling to Better Understand Metabolism Dynamics

 Cecile Moulin , Laurent Tournier , Sabine S. Peres
Processes, 2021, 9 (10), pp.1701. ⟨10.3390/pr9101701⟩
Article dans une revue hal-03592743v1

Analysis of the variability of human normal urine by 2D-GE reveals a "public" and a "private" proteome

 Laurence Molina , Nicolas Salvetat , Randa Ben Ameur , Sabine Pérès , Nicolas Sommerer , et al.
Journal of Proteomics, 2011, 75 (1), pp.70 - 80. ⟨10.1016/j.jprot.2011.06.031⟩
Article dans une revue hal-02652376v1

Answer set programming to compute constraint elementary flux modes.

 Maxime Mahout , Laurent Simon , Sabine Peres
Metabolic Pathway Analysis, Aug 2021, Knoxville, France
Communication dans un congrès hal-03903367v1

Using a hybrid approach to model central carbon metabolism across the cell cycle

 Cecile Moulin , Laurent Tournier , Sabine Pérès
International Workshop on Hybrid Systems Biology, Apr 2019, Prague, Czech Republic. ⟨10.1007/978-3-030-28042-0_9⟩
Communication dans un congrès hal-02791386v1

Identifying Biomarkers of Wharton’s Jelly Mesenchymal Stromal Cells Using a Dynamic Metabolic Model: The Cell Passage Effect

 Benoît Laflaquière , Gabrielle Leclercq , Chandarong Choey , Jingkui Chen , Sabine Pérès , et al.
Metabolites, 2018, 8 (1), pp.18. ⟨10.3390/metabo8010018⟩
Article dans une revue hal-01784012v1

ACoM: A classification method for elementary flux modes based on motif finding

 Sabine Pérès , Francois Vallee , Marie M. Beurton-Aimar , Jean-Pierre Mazat
BioSystems, 2011, 103 (3), pp.410-419
Article dans une revue hal-00629161v1
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Représentation systémique multi-échelle des processus biologiques de la bactérie

 Vincent J. Henry , Arnaud Ferré , Christine Froidevaux , Anne Goelzer , Vincent V. Fromion , et al.
IC2016 - Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès hal-01442727v1

Minimality of Metabolic Flux Modes under Boolean Regulation Constraints

 Morterol Martin , Philippe Dague , Sabine Pérès , Laurent Simon
12th International Workshop on Constraint-Based Methods for Bioinformatics WCB’16, Sep 2016, Toulouse, France
Communication dans un congrès hal-01483433v1

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

 Cécile Fleury , Marie Francoise M. F. Gautier , Pierre Larmande , Sabine Pérès , Frédéric F. de Lamotte , et al.
JOBIM2010, Sep 2010, Montpellier, France
Communication dans un congrès hal-02753839v1

Cancer and Alzheimer’s disease: intracellular pH scales the metabolic disorders

 Laurent Schwartz , Sabine S. Peres , Mario Jolicoeur , Jorgelindo da Veiga Moreira
Biogerontology, 2020, 21 (6), pp.683-694. ⟨10.1007/s10522-020-09888-6⟩
Article dans une revue hal-02968151v1

Thermodynamic constraints for identifying elementary flux modes

 Sabine Pérès , Stefan Schuster , Philippe Dague
Biochemical Society Transactions, 2018, 46 (3), pp.641-647. ⟨10.1042/BST20170260⟩
Article dans une revue hal-01802074v1
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Cell cycle progression is regulated by intertwined redox oscillators

 Jorgelindo da Veiga Moreira , Sabine Pérès , Jean-Marc Steyaert , Erwan Bigan , Loïc Paulevé , et al.
Theoretical Biology and Medical Modelling, 2015, 12 (1), pp.10. ⟨10.1186/s12976-015-0005-2⟩
Article dans une revue hal-01158514v1

Hybrid modelling to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling

 Sabine Peres
BIOSTEC 2023, Feb 2023, Lisbon (Portugal), Portugal
Communication dans un congrès hal-04036239v1
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