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38

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Article dans une revue9 documents

  • Erwan Hingant, Romain Yvinec. The Becker-Doring Process: Pathwise Convergence and Phase Transition Phenomena. Journal of Statistical Physics, Springer Verlag, 2019, 177 (3), pp.506 - 527. ⟨10.1007/s10955-019-02377-2⟩. ⟨hal-02623612⟩
  • Flavie Landomiel, Francesco de Pascali, Pauline Raynaud, Romain Yvinec, Lucie Pellissier, et al.. Citation: Biased Signaling and Allosteric Modulation at the FSHR. Frontiers in Endocrinology, Frontiers, 2019, 1, ⟨10.3389/fendo.2019.00148⟩. ⟨hal-02362528⟩
  • Flavie Landomiel, Francesco de Pascali, Pauline Raynaud, Frédéric Jean-Alphonse, Romain Yvinec, et al.. Biased Signaling and Allosteric Modulation at the FSHR. Frontiers in Endocrinology, Frontiers, 2019, 10, pp.148. ⟨10.3389/fendo.2019.00148⟩. ⟨hal-02362523⟩
  • Frédérique Clément, Frédérique Robin, Romain Yvinec. Analysis and calibration of a linear model for structured cell populations with unidirectional motion : Application to the morphogenesis of ovarian follicles. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2019, 79 (1), pp.207-229. ⟨10.1137/17M1161336⟩. ⟨hal-01852560v2⟩
  • Romain Yvinec, Pascale Crepieux, Eric Reiter, Anne Poupon, Frédérique Clément. Advances in computational modeling approaches of pituitary gonadotropin signaling. Expert Opinion on Drug Discovery, Informa Healthcare, 2018, 13 (9), pp.799-813. ⟨10.1080/17460441.2018.1501025⟩. ⟨hal-01913612⟩
  • M.C. Mackey, M. Tyran-Kamińska, Romain Yvinec. Dynamic behavior of stochastic gene expression models in the presence of bursting. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2013, 73 (5), pp.1830-1852. ⟨10.1137/12090229X⟩. ⟨hal-02650825⟩
  • Romain Yvinec, Maria R. d'Orsogna, Tom Chou. First passage times in homogeneous nucleation and self-assembly. Journal of Chemical Physics, American Institute of Physics, 2012, 137 (24), pp.1-18. ⟨10.1063/1.4772598⟩. ⟨hal-02649185⟩
  • Michael C. Mackey, Marta Tyran-Kamińska, Romain Yvinec. Molecular distributions in gene regulatory dynamics. Journal of Theoretical Biology, Elsevier, 2011, 274 (1), pp.84. ⟨10.1016/j.jtbi.2011.01.020⟩. ⟨hal-00671834⟩
  • Michael C. Mackey, Marta Tyran-Kamińska, Romain Yvinec. Molecular distributions in gene regulatory dynamics. Journal of Theoretical Biology, Elsevier, 2011, 274 (1), pp.84-96. ⟨10.1016/j.jtbi.2011.01.020⟩. ⟨hal-02650303⟩

Communication dans un congrès13 documents

  • Romain Yvinec, Samuel Bernard, Tom Chou, Julien Deschamps, Maria R. d'Orsogna, et al.. Nucleation time in stochastic Becker-Doring model. 11. AIMS Conference on Dynamical Systems, Differential Equations and Applications, American Institute of Mathematical Science (AIMS). USA., Jul 2016, Orlando, United States. 45 diapositives. ⟨hal-02797058⟩
  • Romain Yvinec. Time scales in a coagulation-fragmentation model. 2. BCAM Workshop on Nonlinear Dynamics in Biological Systems, Basque Center for Applied Mathematics (BCAM). ESP., Sep 2016, Bilbao, Spain. ⟨hal-02792839⟩
  • Romain Yvinec, Samuel Bernard, Tom Chou, Julien Deschamps, Maria R. d'Orsogna, et al.. Stochastic coagulation-fragmentation models for the study of protein aggregation phenomena. Stochastic Dynamical Systems in Biology: Numerical Methods and Applications, Isaac Newton Institute. GBR., Jan 2016, Cambridge, United Kingdom. 31 diapositives. ⟨hal-02795563⟩
  • Thomas Bourquard, Mohammed Akli Ayoub, Domitille Heitzler, Nikolaus Hansen, Jérôme Azé, et al.. Accurate parameter optimization leads to predictive dynamical models for systems biology. 23. Journée du projet CASCIMODOT, Université d'Orléans (UO). FRA. Université François Rabelais (Tours)., Dec 2015, Tours, France. ⟨hal-02793656⟩
  • Thomas Bourquard, Mohammed Akli Ayoub, Domitille Heitzler, N. Hansen, Jérôme Azé, et al.. Accute parameter optimization leads to predictive dynamical models for systems biology. Perspectives in Environmental and Systems Biology, Structure Fédérative de Recherche (SFR). FRA., Apr 2015, Grenoble, France. ⟨hal-02799266⟩
  • Thomas Bourquard, Mohammed Akli Ayoub, Domitille Heitzler, Nikolaus Hansen, Jérôme Azé, et al.. Accurate parameter optimization leads to predictive dynamical models for systems biology. Design, Optimization and Control in Systems and Synthetic Biology DOC'15, Ecole Normale Supérieure - Paris (ENS Paris). FRA., Nov 2015, Paris, France. ⟨hal-02799275⟩
  • Romain Yvinec, Julien Deschamps, Erwan Hingant. From Becker-Döring to Lifshitz-Slyozov: deriving the non-local boundary condition of a non-linear transport equation. Workshop on Multiscale and Hybrid Modelling in Cell and Cell Population Biology, Université Pierre et Marie Curie - Paris 6 (UPMC). Paris, FRA., Mar 2015, Paris, France. ⟨10.1051/itmconf/20150500017⟩. ⟨hal-02741964⟩
  • Romain Yvinec, Julien Deschamps, Erwan Hingant. From Becker-Doring to Lifshitz-Slyozov: deriving the boundary condition. BIOMAT 2015, Instituto Nacional de Matemática Pura e Aplicada. BRA., Mar 2015, Cabo Frio, Brazil. ⟨hal-02792548⟩
  • Romain Yvinec, Michael C. Mackey, Marta Tyran-Kamińska, Changjing Zhuge. Bursting in gene expression model. Colloque PDMP, Agence Nationale de la Recherche (ANR). FRA., May 2015, Saint Martin de Londres, France. ⟨hal-02797859⟩
  • Romain Yvinec, Julien Deschamps, Erwan Hingant. Nucleation time in coagulation-fragmentation models. Journées Modélisation Aléatoire et Statistique de la SMAI (Société de Mathématiques Appliquées et Industrielles), Société de Mathématiques Appliquées et Industrielles (SMAI). FRA., Jun 2015, Les Karellis, France. ⟨hal-02794818⟩
  • Romain Yvinec, Michael C. Mackey, Marta Tyran-Kamińska, Changjing Zhuge. Bursting in gene expression. Colloque PDMP, Agence Nationale de la Recherche (ANR). FRA., Nov 2015, Tours, France. ⟨hal-02797860⟩
  • Romain Yvinec, M. Mackey, M. Tyran-Kamińska, A. Marciniak-Czochra. Towards nonlinear cell population model structured by molecular content. 9. European Conference on Mathematical and Theoretical Biology - ECMTB14, Chalmers University of Technology. SWE., Jun 2014, Göteborg, Sweden. ⟨hal-02797850⟩
  • Romain Yvinec, Michael C. Mackey, M. Tyran-Kamińska, A. Marciniak-Czochra. Towards nonlinear cell population model structured by molecular content. Structured Integro-Differential models in Mathematical Biology, Vienna International Science Conferences and Events Association. AUT., Apr 2014, Vienne, Austria. ⟨hal-02797854⟩

Poster4 documents

  • Mohammed Akli Ayoub, Thomas Boulo, Thomas Bourquard, Pascale Crépieux, Florian Jean Louis Guillou, et al.. Intégration des contraintes spatiales dans la modélisation dynamique d’un système biologique complexe : le réseau de signalisation FSH. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. 115 p., 2016, Crédits Incitatifs financés entre 2011 et 2014. ⟨hal-02742541⟩
  • Thomas Bourquard, Domitille Heitzler, Guillaume Durand, Romain Yvinec, Nikolaus Hansen, et al.. Parameter estimation in signaling systems. International Conference on Gonadotropins & Receptors, Sep 2014, Tours, France. 2014, ICGRIII International Conference on Gonadotropins & Receptors. ⟨hal-02740420⟩
  • F. Vandermoere, Elisabeth Cassier, Nathalie Langonné Gallay, Thomas Bourquard, Romain Yvinec, et al.. Beta-arrestin 2 barcode of phosphorylation: impact on beta-arrestin-dependent signaling. 3. Annual Meeting of the GDR 3545 RCPG-PhysioMed, Oct 2014, Montpellier, France. 2014. ⟨hal-02793437⟩
  • Romain Yvinec. Bursting and division in a nonlinear cell population model. Stochastic Biology: from Cells to Populations, May 2014, Vienne, Austria. 1 p., 2014. ⟨hal-02796022⟩

Chapitre d'ouvrage1 document

  • Eric Reiter, Romain Yvinec, Pascale Crépieux, Anne Poupon. Coupling of recognition and effect in GPRC signaling computational modelling approaches. Molecular life sciences : An encyclopedic reference, Springer-Verlag, 2018, 978-1-4614-1529-9. ⟨10.1007/978-1-4614-1531-2⟩. ⟨hal-02788113⟩

Pré-publication, Document de travail8 documents

  • Céline Bonnet, Keltoum Chahour, Frédérique Clément, Marie Postel, Romain Yvinec. Multiscale population dynamics in reproductive biology: singular perturbation reduction in deterministic and stochastic models. 2019. ⟨hal-02075253⟩
  • Frédérique Clément, Frédérique Robin, Romain Yvinec. Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation. 2019. ⟨hal-02057983⟩
  • Bertrand Cloez, Renaud Dessalles, Alexandre Genadot, Florent Malrieu, Aline Marguet, et al.. Probabilistic and Piecewise Deterministic models in Biology. 2017. ⟨hal-01549687⟩
  • Romain Yvinec. Adiabatic reduction of models of stochastic gene expression with bursting. 2013. ⟨hal-02806255⟩
  • M. C. Mackey, M. Tyran-Kamińska, R. Yvinec. Dynamic behavior of stochastic gene expression models in the presence of bursting. 2013. ⟨hal-01054500⟩
  • Romain Yvinec, Changjing Zhuge, Jinzhi Lei, Michael C. Mackey. Adiabatic reduction of a model of stochastic gene expression with jump Markoc process. 2012. ⟨hal-00674572⟩
  • Romain Yvinec, Alexandre F. Ramos. On the bursting of gene products. 2011. ⟨hal-00651588⟩
  • Romain Yvinec, Alexandre F. Ramos. On the bursting of gene products. 2011. ⟨hal-02807645⟩

Thèse2 documents

  • Romain Yvinec. Modélisation probabiliste en biologie moléculaire et cellulaire. Probabilités [math.PR]. Université Claude Bernard - Lyon I, 2012. Français. ⟨tel-00749633⟩
  • Romain Yvinec. Modélisation probabiliste en biologie cellulaire et moléculaire. Other [q-bio.OT]. Université Claude Bernard Lyon 1, 2012. English. ⟨tel-02809506⟩

Cours1 document

  • Romain Yvinec. Piecewise deterministic Markov processes, applications in biology. 3rd cycle. Mini-cours chercheur (Laboratoire Jacques Louis-Lions, Université Paris VI), 2015, 24 p. ⟨hal-02795547⟩