|
|
A Hybrid Algorithm for the Unbounded Knapsack Problem
Vincent Poirriez
,
Nicola Yanev
,
Rumen Andonov
Article dans une revue
inria-00335065v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Détection de domaines dans des séquences génomiques : un problème de couverture optimale
Philippe Veber
,
Sébastien Tempel
,
Rumen Andonov
,
Dominique Lavenier
,
Jacques Nicolas
FRANCORO V/ROADEF 2007, Feb 2007, Grenoble, France
Communication dans un congrès
hal-00186471v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Parallel seed-based approach to multiple protein structure similarities detection
Guillaume Chapuis
,
Mathilde Le Boudic-Jamin
,
Rumen Andonov
,
Hristo Djidjev
,
Dominique Lavenier
2014
Pré-publication, Document de travail
hal-01093809v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Energy Modeling and Optimization for Tiled Nested-Loop Codes
Nirmal Prajapati
,
Waruna Ranasinghe
,
Vamsi Krishna Tandrapati
,
Rumen Andonov
,
Hristo Djidjev
,
et al.
Parallel and Distributed Processing Symposium Workshop (IPDPSW), May 2015, Hyderabad India. pp.888 - 895 ⟨10.1109/IPDPSW.2015.94⟩
Communication dans un congrès
hal-01250602v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
GPU-accelerated shortest paths computations for planar graphs
Guillaume Chapuis
,
Hristo Djidjev
,
Dominique Lavenier
,
Rumen Andonov
Hamid Azad Advances in GPU Research and Practice , Elsevier, pp.774, 2016, 9780128037386
Chapitre d'ouvrage
hal-01385634v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Lagrangian Approaches for a class of Matching Problems in Computational Biology
Nicola Yanev
,
Rumen Andonov
,
Philippe Veber
,
Stefan Balev
[Research Report] RR-5973, INRIA. 2006
Rapport
inria-00090635v2
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Maximum Cliques in Protein Structure Comparison
Noël Malod-Dognin
,
Rumen Andonov
,
Nicola Yanev
Communication dans un congrès
inria-00536700v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Lagrangian approaches for a class of matching problems in computational biology
Nicola Yanev
,
Rumen Andonov
,
Philippe Veber
,
Stefan Balev
Article dans une revue
inria-00335126v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Solving Maximum Clique Problem for Protein Structure Similarity
Noël Malod-Dognin
,
Rumen Andonov
,
Nicola Yanev
[Research Report] RR-6818, INRIA. 2009, pp.12
Rapport
inria-00356816v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Solving Maximum Clique Problem for Protein Structure Similarity
Noël Malod-Dognin
,
Rumen Andonov
,
Nicola Yanev
Serdica Journal of Computing, 2010, 4 (1), pp.93--100
Article dans une revue
hal-00849979v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric
Rumen Andonov
,
Hristo Djidjev
,
Gunnar Klau
,
Mathilde Boudic-Jamin
,
Inken Wohlers
Article dans une revue
hal-01248543v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Assemblage de Novo de Longues Lectures Par Programmation Linéaire
Victor Epain
,
Rumen Andonov
,
Hristo Djidjev
,
Dominique Lavenier
2020
Pré-publication, Document de travail
hal-03007132v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
The PROTEUS project: Improving large-scale structure prediction for proteins
T. Simonson
,
R. Andonov
,
Jean-François Gibrat
,
J. Pothier
,
Yh Sanejouand
journée restitution ANR Calcul Intensif et Simulation, Feb 2010, Paris, France. 39 p
Communication dans un congrès
hal-02818506v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Automatic Classification of Protein Structures Using the Maximum Contact Map Overlap Metric
Rumen Andonov
,
Hristo Djidjev
,
Klau Gunnar
,
Mathilde Le Boudic-Jamin
,
Inken Wohlers
Algorithms, 2015, Special Issue Algorithmic Themes in Bioinformatics, Volume 8 (Issue 4), pp.20. ⟨10.3390/a8040850⟩
Article dans une revue
hal-01250539v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Maximum Cliques in Protein Structure Comparison
Noël Malod-Dognin
,
Rumen Andonov
,
Nicola Yanev
[Research Report] RR-7053, INRIA. 2009, pp.19
Rapport
inria-00422198v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Le projet GénoGRID : une grille expérimentale pour la génomique
Dominique Lavenier
,
Hugues Leroy
,
Michel Hurfin
,
Rumen Andonov
,
L. Mouchard
,
et al.
Journées Ouvertes Biologie Informatique et Mathématiques, 2002, Saint Malo, France. pp.27-32
Communication dans un congrès
hal-00465092v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Overlap Graphs for Assembling and Scaffolding Algorithms: Paradigm Review and Implementation Proposals
Victor Epain
,
Rumen Andonov
2022
Pré-publication, Document de travail
hal-03878293v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Inverted Repeats Scaffolding for a Dedicated Chloroplast Genome Assembler
Victor Epain
,
Dominique Lavenier
,
Rumen Andonov
2022
Pré-publication, Document de travail
hal-03684406v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Towards Structural Classification of Proteins based on Contact Map Overlap
Rumen Andonov
,
Nicola Yanev
,
Noël Malod-Dognin
[Research Report] RR-6370, INRIA. 2007, pp.20
Rapport
inria-00192206v2
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Global Optimization for Scaffolding and Completing Genome Assemblies
Sebastien François
,
Rumen Andonov
,
Dominique Lavenier
,
Hristo Djidjev
Electronic Notes in Discrete Mathematics, 2018
Article dans une revue
hal-03697534v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Global Optimization for Scaffolding and Completing Genome Assemblies
Sebastien François
,
Rumen Andonov
,
Dominique Lavenier
,
Hristo Djidjev
International Network Optimization Conference , European Network Optimization Group (ENOG), Feb 2017, Lisboa, Portugal. pp.15
Communication dans un congrès
hal-01499859v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Integer Programming Approach for Nested Pairs Genome Scaffolding
Victor Epain
,
Rumen Andonov
2022
Pré-publication, Document de travail
hal-03613353v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Comparing Protein 3D Structures Using A_purva
Noël Malod-Dognin
,
Nicola Yanev
,
Rumen Andonov
[Research Report] RR-7464, INRIA. 2010, pp.9
Rapport
inria-00539939v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Lagrangian Approaches for a class of Matching Problems in Computational Biology
Nicola Yanev
,
Rumen Andonov
,
Philippe Veber
,
Stefan Balev
[Research Report] PI 1814, 2006, pp.18
Rapport
inria-00091944v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
GenoFrag: software to design primers optimized for whole genome scanning by long-range PCR amplification.
Nouri Ben Zakour
,
Michel Gautier
,
Rumen Andonov
,
Dominique Lavenier
,
Marie-Françoise Cochet
,
et al.
Article dans une revue
hal-01454461v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Global Optimization for Scafolding and Completing Genome Assemblies
Sebastien François
,
Rumen Andonov
,
Dominique Lavenier
,
Hristo Djidjev
12th International Workshop on Constraint-Based Methods for Bioinformatics, Sep 2016, Toulouse, France
Communication dans un congrès
hal-01567134v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Assembling close strains in metagenome assemblies using discrete optimization
Tam Khac Minh Truong
,
Roland Faure
,
Rumen Andonov
BIOINFORMATICS 2024 - 15th International conference on bioinformatics models, methods and algorithms, Feb 2024, Rome, Italy. pp.1-10
Communication dans un congrès
hal-04349675v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Recent Advances in Solving the Protein Threading Problem
Rumen Andonov
,
Guillaume Collet
,
Jean-François Gibrat
,
Antoine Marin
,
Vincent Poirriez
,
et al.
[Research Report] PI 1856, 2007, pp.38
Rapport
inria-00170619v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Local protein threading by Mixed Integer Programming
Guillaume Collet
,
Rumen Andonov
,
Jean-François Gibrat
,
Nicola Yanev
Article dans une revue
inria-00536537v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Efficient Multi-GPU Algorithm for All-Pairs Shortest Paths
Guillaume Chapuis
,
Hristo Djidjev
,
Rumen Andonov
,
Sunil Thulasidasan
,
Dominique Lavenier
IPDPS 2014, Manish Parashar, May 2014, Phoenix, United States
Communication dans un congrès
hal-00905738v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|