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Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops

 Nathalie Bastié , Christophe Chapard , Lise Dauban , Olivier Gadal , Frederic Beckouet , et al.
Nature Structural and Molecular Biology, 2022, 29 (6), pp.575-585. ⟨10.1038/s41594-022-00780-0⟩
Article dans une revue hal-03697578v1
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Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay

 Martial Marbouty , Lyam Baudry , Axel Cournac , Romain Koszul
Science Advances , 2017, 3 (2), pp.e1602105. ⟨10.1126/sciadv.1602105⟩
Article dans une revue pasteur-02866658v1
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Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution.

 Julien Mozziconacci , Romain Koszul
Genome Biology, 2015, 16 (1), pp.169. ⟨10.1186/s13059-015-0744-8⟩
Article dans une revue pasteur-01420328v1
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Genome-wide chromatin and expression datasets of various pathogenic ascomycetes

 Sébastien Bloyer , Romain Koszul
2022, pp.100014. ⟨10.24072/pci.genomics.100014⟩
Autre publication scientifique hal-03722802v1

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

 Virginia S. Lioy , Axel Cournac , Martial Marbouty , Stéphane Duigou , Julien Mozziconacci , et al.
Cell, 2018, 172 (4), pp.771--783.e18. ⟨10.1016/j.cell.2017.12.027⟩
Article dans une revue hal-02180787v1
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Perspectives on Chromosome Organization

 Marcelo Nollmann , Romain Koszul
Journal of Molecular Biology, 2020, 432 (3), pp.635-637. ⟨10.1016/j.jmb.2019.12.021⟩
Article dans une revue pasteur-02868093v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

 Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732v1
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Spatial reorganization of telomeres in long-lived quiescent cells

 Micol Guidi , Myriam Ruault , Martial Marbouty , Isabelle Loïodice , Axel Cournac , et al.
Genome Biology, 2015, 16 (1), pp.206. ⟨10.1186/s13059-015-0766-2⟩
Article dans une revue hal-01206018v1
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Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

 Etienne Jourdier , Lyam Baudry , Dante Poggi-Parodi , Yoan Vicq , Romain Koszul , et al.
Biotechnology for Biofuels, 2017, 10 (1), pp.151. ⟨10.1186/s13068-017-0837-6⟩
Article dans une revue hal-01581813v1
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Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder

 Lyam Baudry , Martial Marbouty , Hervé Marie-Nelly , Alexandre Cormier , Nadège Guiglielmoni , et al.
2021
Pré-publication, Document de travail hal-02947625v1

Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization

 Cyril Matthey-Doret , Lyam Baudry , Shogofa Mortaza , Pierrick Moreau , Romain Koszul , et al.
Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩
Chapitre d'ouvrage pasteur-03376844v1

Meiotic Chromosomes Move by Linkage to Dynamic Actin Cables with Transduction of Force through the Nuclear Envelope

 Romain Koszul , K.P. Kim , M. Prentiss , N. Kleckner , S. Kameoka
Cell, 2008, 133 (7), pp.1188-1201. ⟨10.1016/j.cell.2008.04.050⟩
Article dans une revue pasteur-03376826v1
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Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

 Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry , et al.
Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩
Article dans une revue hal-01890095v1
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Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

 Maya Spichal , Alice Brion , Sébastien Herbert , Axel Cournac , Martial Marbouty , et al.
Journal of Cell Science, 2016, 129 (4), pp.681-92. ⟨10.1242/jcs.175745⟩
Article dans une revue pasteur-01419905v1
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High-quality genome (re)assembly using chromosomal contact data

 Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Jean-François Flot , Gianni Liti , et al.
Nature Communications, 2014, 5, pp.5695. ⟨10.1038/ncomms6695⟩
Article dans une revue hal-01138788v1
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Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

 Jean-François Flot , Boris Hespeels , Xiang Li , Benjamin Noel , Irina Arkhipova , et al.
Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩
Article dans une revue hal-01282538v1
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Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community

 Quentin Lamy-Besnier , Romain Koszul , Laurent Debarbieux , Martial Marbouty
Microbiology Resource Announcements, 2021, 10 (17), pp.e01396-20. ⟨10.1128/MRA.01396-20⟩
Article dans une revue pasteur-03204821v1
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Generation and Analysis of Chromosomal Contact Maps of Yeast Species.

 Axel Cournac , Martial Marbouty , Julien Mozziconacci , Romain Koszul
Methods in Molecular Biology, 2016, Yeast Functional Genomics, 1361, pp.227-45. ⟨10.1007/978-1-4939-3079-1_13⟩
Article dans une revue pasteur-01419912v1
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3D organization of synthetic and scrambled chromosomes

 Guillaume Mercy , Julien Mozziconacci , Vittore F Scolari , Kun Yang , Guanghou Zhao , et al.
Science, 2017, 355 (6329), pp.eaaf4597. ⟨10.1126/science.aaf4597⟩
Article dans une revue pasteur-01523221v1
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Beyond the bounds of evolution: Synthetic chromosomes… How and what for?

 Romain Koszul
Comptes Rendus Biologies, 2016, 339 (7-8), pp.324-8. ⟨10.1016/j.crvi.2016.05.007⟩
Article dans une revue pasteur-01419924v1
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Computer vision for pattern detection in chromosome contact maps

 Cyril Matthey-Doret , Lyam Baudry , Axel Breuer , Rémi Montagne , Nadège Guiglielmoni , et al.
Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Article dans une revue pasteur-03263561v1
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Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

 Pierrick Moreau , Axel Cournac , Gianna Aurora Palumbo , Martial Marbouty , Shogofa Mortaza , et al.
Nature Communications, 2018, 9 (1), pp.4268. ⟨10.1038/s41467-018-06739-4⟩
Article dans une revue pasteur-02866759v1
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Crosstalk between Hepatitis B Virus and the 3D Genome Structure

 João Diogo Dias , Nazim Sarica , Axel Cournac , Romain Koszul , Christine Neuveut
Viruses, 2022, 14 (2), pp.445. ⟨10.3390/v14020445⟩
Article dans une revue pasteur-03689314v1

The complete mitochondrial genome sequence of the pathogenic yeast Candida ( Torulopsis ) glabrata

 Romain Koszul , Alain Malpertuy , Lionel Frangeul , Christiane Bouchier , Patrick Wincker , et al.
FEBS Letters, 2003, 534 (1-3), pp.39-48. ⟨10.1016/s0014-5793(02)03749-3⟩
Article dans une revue pasteur-02868102v1
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MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut

 Martial Marbouty , Agnès Thierry , Gael A. Millot , Romain Koszul
eLife, 2021, 10, pp.e60608. ⟨10.7554/eLife.60608⟩
Article dans une revue pasteur-03369735v1
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Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure.

 Martial Marbouty , Caroline Ermont , Bernard Dujon , Guy-Franck Richard , Romain Koszul
Yeast, 2014, 31 (5), pp.159-166. ⟨10.1002/yea.3005⟩
Article dans une revue pasteur-01420008v1
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A predictive computational model of the dynamic 3D interphase yeast nucleus.

 Hua Wong , Hervé Marie-Nelly , Sébastien Herbert , Pascal Carrivain , Hervé Blanc , et al.
Current Biology - CB, 2012, 22 (20), pp.1881-1890. ⟨10.1016/j.cub.2012.07.069⟩
Article dans une revue pasteur-01420017v1
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Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga

 Paul Simion , Jitendra Narayan , Antoine Houtain , Alessandro Derzelle , Lyam Baudry , et al.
Science Advances , 2021, 7 (41), pp.eabg4216. ⟨10.1126/sciadv.abg4216⟩
Article dans une revue hal-03406292v1
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Sir3 mediates long-range chromosome interactions in budding yeast

 Myriam Ruault , Vittore F Scolari , Luciana Lazar-Stefanita , Antoine Hocher , Isabelle Loïodice , et al.
Genome Research, 2021, 31 (3), pp.411-425. ⟨10.1101/gr.267872.120⟩
Article dans une revue hal-03169421v1
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Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria

 Quentin Lamy-Besnier , Amaury Bignaud , Julian R Garneau , Marie Titecat , Devon E Conti , et al.
Microbiome, 2023, 11 (1), pp.111. ⟨10.1186/s40168-023-01541-x⟩
Article dans une revue pasteur-04158849v1
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