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Romain David

Romain DAVID, PhD, Océanographie et data mining - Spécialiste en interopérabilité des Systèmes d'Information Environnementaux et valorisation des savoirs en sciences de la vie Mes travaux concernent les systèmes d’observation et d'expérimentation à large échelle des (agro)écosystèmes terrestres et marins et les systèmes d'information et de la valorisation de la connaissance sur la biodiversité qui y sont couplés. Je m'intéresse particulièrement aux nouvelles méthodes de fouille de données et à la représentation des données sous forme de graphes (mono ou multilayers, mono ou pluripartites, sémantiques ou non). Cette formalisation de la connaissance permet d'envisager l'usage de nouvelles méthodes d'analyse de données hétérogènes, de proposer des questionnements scientifiques émergeant des données (et non l'inverse, qui est l'approche scientifique classique), et de faire des propositions de scenarios dépendant de variables de contextes utilisables dans le domaine de l'aide à la décision. Je souhaite continuer à m’investir dans le développement de programmes de recherche pluri voire transdisciplinaires et des partenariats associant scientifiques et acteurs publics. Je m'implique dans les initiatives et démarches pour la science ouverte aux niveaux européen et international (FAIRness literacy, Data Management Plan, FAIRisation training).
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Présentation

### Ingénieur de Recherche - Data Manager de [ERINHA AISBL](https://www.erinha.eu/) (European Research Infrastructure on Highly Pathogenic Agents) * Développement du data management plan d'ERINHA * Mise en place et développement du catalogue de données d'ERINHA, * Développement d'un centre de ressource de données dans le cloud respectant les principes FAIR, * Mise en place de procédures garantissant la sécurité des données, ainsi que les restrictions d'accès nécessaires, leur stockage et archivage et les méthodologies de transfert des données sensibles, * Identification, déploiement et implémentation des outils web (VRE) et e-infrastructures pour le management des données de ERINHA. * WP Leader du programme européen [ISIDORe](https://www.isidore-project.eu/) * Task Leader du programme européen [By-COVID](https://by-covid.eu/) * Co-chair du [R.D.A. IG SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) * Co-chair du [R.D.A. IG PDS](https://www.rd-alliance.org/groups/professionalising-data-stewardship-ig) (Professionnalising Data Stewardship Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) * Co-chair du [R.D.A. IG SD](https://www.rd-alliance.org/groups/sensitive-data-interest-group) (Sensitive Data Interest Group in [Research Data Alliance](https://www.rd-alliance.org/) * Co-chair de la liste RDA France Santé -> pour s'inscrire à [RDA France Santé](https://listes.services.cnrs.fr/wws/subscribe/rda-france-sante) * Co-chair de la liste "RDA France FAIR Data" -> pour s'inscrire à : [RDA France FAIR Data](https://listes.services.cnrs.fr/wws/subscribe/rda-france-fair) * Member actif de [EOSC Task Force FAIR Metrics and Data Quality](https://www.eosc.eu/advisory-groups/fair-metrics-and-data-quality) * Membre actif de FDO Forum sous groupe ["FDO type" et "FDO Sem"](https://fairdo.org/wg/fdo-sig/) #### précédemment Ingénieur de Recherche à l'INRAE (Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) Laboratoire Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie ([UMR MISTEA](https://www6.montpellier.inrae.fr/mistea)) - Interopération des plates-formes (Phenotyping Hybrid Information System) et animation des échanges entre les acteurs de différentes disciplines (concernant l’adoption, le choix et la mise en oeuvre d’ontologies et de normes notamment) - Participation au développement des standards de domaine. - Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) #### précédemment PhD Océanographie - Fouille de données à l'Institut Ecologie et Environnement du CNRS Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale ([IMBE UMR 7263](https://www.imbe.fr/)) - Initiateur et animateur du consortium [IndexMed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")devenu depuis [IndexMEED](http://www.indexmeed.eu/ "Indexing for Mining Ecological and Environmental Data") - Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) - WP Leader du programme européen [CIGESMED](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the Good Environmental Status of the MEDiterranean coastal waters") - Administrateur de différentes bases de données concernant des systèmes d'observations côtiers Domaine d’activité ------------------ Mes travaux concernent les systèmes d’observation et d'expérimentation à large échelle des (agro)écosystèmes terrestres et marins et les systèmes d'information et de la valorisation de la connaissance sur la biodiversité qui y sont couplés. Je m'intéresse particulièrement aux nouvelles méthodes de fouille de données et à la représentation des données sous forme de graphes (mono ou multilayers, mono ou pluripartites, sémantiques ou non). Cette formalisation de la connaissance permet d'envisager l'usage de nouvelles méthodes d'analyse de données hétérogènes, de proposer des questionnements scientifiques émergeant des données (et non l'inverse, qui est l'approche scientifique classique), et de faire des propositions de scenarios dépendant de variables de contextes utilisables dans le domaine de l'aide à la décision. Je souhaite continuer à m’investir dans le développement de programmes de recherche pluri voire transdisciplinaires et des partenariats associant scientifiques et acteurs publics. Je m'implique dans les initiatives et démarches pour la science ouverte aux niveaux européen et international (FAIRness literacy, Data Management Plan, FAIRisation training). Thèmes et intérêts ------------------ Informatique dans le domaine de la biodiversité et de l'agronomie, bases de données, représentations des connaissances, gestion de données scientifiques, Plan de gestion de données, fouille de données, développement de communautés autour de la donnée, visualisation de données, dissémination, science ouverte, big data Ecologie côtière, Macro-écologie, Benthos, écologie Marine, suivi de la Biodiversité, suivi des impacts environnementaux, Océanographie biologique, Restauration écologique, Gestion des ressources en Milieu marin, systèmes d’aide à la décision Programmes de recherches récents et en cours -------------------------------------------- En cours - [ISIDORe](https://www.isidore-project.eu/) (Integrated Services for Infectious Diseases Outbreak Research) a pour objectif d’accroître la réactivité et la préparation de l'UE à toute menace épidémique en fournissant une très large gamme de services innovants et de haute qualité à toutes les communautés d'utilisateurs scientifiques ayant des projets dans le domaine des agents hautement pathogènes. Le consortium ISIDORe représente le plus grand instrument de recherche dédié à l'étude des pathogènes à haut risque jamais mis en place. Suite à l'appel à manifestation d'intérêt de l'incubateur de l'HERA sur les variantes du SARS‑CoV\_2, le projet ISIDORe (Integrated Services for Infectious Disease Outbreak Research) dirigé par ERINHA a été sélectionné comme l'une des premières actions d'Horizon Europe. Le consortium ISIDORe comprend 154 participants de 32 pays du monde entier et contribuera aux efforts de recherche sur les variants du SRAS-CoV-2 et tout autre agent pathogène à tendance épidémique, en assemblant un portefeuille intégré et complémentaire d'état de l'art, de services de pointe au profit de la communauté scientifique. (under CE grant agreement Nº101046133) - [By-COVID](https://by-covid.eu/): Le monde a généré de grandes quantités de données en réponse à la pandémie de COVID-19, et en génère toujours plus. Ces données proviennent de nombreuses sources différentes, et les identifier, les connecter et les intégrer pour une analyse efficace reste un défi majeur. Le projet BeYond-COVID vise à rendre les données sur la COVID-19 accessibles aux scientifiques dans les laboratoires mais aussi à toute personne pouvant les utiliser, comme le personnel médical des hôpitaux ou les responsables gouvernementaux. Au-delà des données sur le SRAS-CoV-2, le projet fournira un cadre pour rendre les données d'autres maladies infectieuses ouvertes et accessibles à tous. (under CE grant agreement Nº101046203) - [QUAMPO](https://quampo.recherche.univ-lr.fr/) (QUAlité des Milieux côtiers POrtuaire en haute-Corse) développe une méthode innovante de monitoring de la qualité des eaux basée sur des techniques d’écotoxicologie de mesure de biomarqueurs chez des invertébrés et à développer des outils pour les gestionnaires des ports. - [EOSC Life](https://www.eosc-life.eu/) - EOSC-Life brings together the 13 Biological and Medical ‘ESFRI’ research infrastructures (BMS RIs) to create an open, digital and collaborative space for biological and medical research. The project will publish ‘FAIR’ data and a catalogue of services provided by participating RIs for the management, storage and reuse of data in the European Open Science Cloud (EOSC). (under CE grant agreement Nº824087) - [PARSEC](http://parsecproject.org/) - The PARSEC project is designed to provide a unique opportunity for data and synthesis scientists to collaborate and exchange in real-time toward the goal of improving research outcomes, data sharing, and data reuse. It will also help pioneer new scientific and data science technologies aimed at improving both the management and conservation of global biodiversity. - [Foosin](https://foosin.fr/en/foosin-project/) - project is working to facilitate the progressive implementation of FAIR principles by data managers and producers in agriculture and agri-food. Improved data management will facilitate interdisciplinarity and reproducibility of work while reducing data duplication. We are particularly interested in the application of FAIR principles to semantic resources (ontologies, thesauri…) which are themselves key elements for making data more FAIR (Principle I2). - [TRAFIC](https://www.researchgate.net/project/Areas-of-potential-high-interaction-between-marine-traffic-and-marine-mammals-in-French-West-Indies) - Areas of potential high-interaction between marine traffic and marine mammals in French West Indies: this project aims at improving the knowledge on the pressure of maritime activities on the marine environment in the Caribbean Sea. In particular, a master internship focuses on studying the spatiotemporal co-occurrence between marine traffic and cetaceans. Passés - [Erinha Advance](https://www.erinha.eu/erinha-advance/) - ERINHA Research Infrastructure was successfully set up and has now entered into its operational phase. ERINHA-Advance is a H2020-funded project which aims to continue supporting the successful operation of the ERINHA Research Infrastructure to ensure its long-term sustainability. (under CE grant agreement Nº824061) - [D2KAB](http://d2kab.mystrikingly.com/) - Data to Knowledge in Agronomy and Biodiveristy project create a framework to turn agronomy and biodiversity data into knowledge –semantically described, interoperable, actionable, open– and investigate scientific methods and tools to exploit this knowledge for applications in science & agriculture - [EPPN2020 ](https://eppn2020.plant-phenotyping.eu/ "European Plant Phénotyping Network")- European Plant Phénotyping Network (Horizon 2020 research and innovation programme under grant agreement Nº731013) - [IndexMEED](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data") - Indexing for Mining Ecological and Environmental Data : www.indexmed.eu (Financement 2016 - [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS")) - GRAMINEES - GRAphe data Mining In Natural, Ecological and Environnemental Sciences (Financement [GDR MaDICS](http://www.madics.fr "Groupement de recherche : Masses de Données, Informations et Connaissances en Sciences")) - EVACOR et EVACOR2 - EVAluation des services écosystémiques des habitats CORalligènes (1 et 2) - [VIGI-GEEK](http://www.indexmed.eu/Defi-Imag-In.html "VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel") - VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel (Défi Imag'in, Financement [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS")) - [CHARLIE](http://www.indexmed.eu/Reponse-au-PEPS-blanc-Projet.html "CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles") - CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles (PEPS Blanc, Financement [INEE - CNRS](http://www.cnrs.fr/inee/ "Institut Ecologie et Environnement")) - [CIGESMED ](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters")- Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters (ANR conventions n° 12-SEAS-0001-01, 02 and 03 for France; GSRT - 12SEAS-12-C2 for Greece; TUBITAK Project No: 112Y393 for Turkey) - [DEVOTES](http://www.devotes-project.eu/ "DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status") - DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status www.devotes-project.eu (European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement n°308392) - [Proteker](http://www.proteker.net "Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation") - Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation. www.proteker.net (Programme IPEV 1044) Vous trouverez les slides des présentations orales - non acceptés dans hal sur researchgate : [Romain David sur ResearchGate](https://www.researchgate.net/profile/Romain_David "Romain David")
### Research fellow - Data Manager at [ERINHA AISBL](https://www.erinha.eu/) (European Research Infrastructure on Highly Pathogenic Agents) - Developing a data management plan for ERINHA - Implementing ERINHA data catalogue, - Developing cloud-compatible, FAIR-compliant data resources, - Ensuring data security, including restricting access to certain data as necessary, data recovery, secure storage and methodologies for the transfer of sensitive data, - Identifying and implementing relevant e-tools and e-infrastructures for ERINHA data management - WP Leader of the european program [ISIDORe](https://www.isidore-project.eu/) - Task Leader of the european program [By-COVID](https://by-covid.eu/) - Co-chair in [R.D.A. IG SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) - Co-chair in [R.D.A. IG PDS](https://www.rd-alliance.org/groups/professionalising-data-stewardship-ig) (Professionnalising Data Stewardship Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) - Co-chair in [R.D.A. IG SD](https://www.rd-alliance.org/groups/sensitive-data-interest-group) (Sensitive Data Interest Group in [Research Data Alliance](https://www.rd-alliance.org/) - Co-chair of the list "RDA France Santé" -> Register here: [RDA France Santé](https://listes.services.cnrs.fr/wws/subscribe/rda-france-sante) - Co-chair of the list "RDA France FAIR Data" -> Register here: [RDA France FAIR Data](https://listes.services.cnrs.fr/wws/subscribe/rda-france-fair) - Member of the [EOSC Task Force FAIR Metrics and Data Quality](https://www.eosc.eu/advisory-groups/fair-metrics-and-data-quality) - Membre of FDO Forum sous groupe ["FDO type" et "FDO Sem"](https://fairdo.org/wg/fdo-sig/) #### before Research fellow at INRAE (Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) [MISTEA laboratory](https://www6.montpellier.inrae.fr/mistea) (UMR Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie) - Interoperability improvment for platforms (Phenotyping Hybrid Information System), ensure links between actors of different disciplines. - Develop activities on the development, adoption, choice and implementation of ontologies and standards, - Take part in the development of domain standards. - Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) #### before Ph.D. Océanography - Data mining at the Ecology and Environment Institute of the CNRS. [IMBE (UMR 7263)](https://www.imbe.fr/) laboratory - Initiator and moderator of the [IndexMed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")consortium which has since become [IndexMEED](http://www.indexmeed.eu/ "Indexing for Mining Ecological and Environmental Data") - Co-chair of the [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)) - WP Leader of the European program [CIGESMED](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the Good Environmental Status of the MEDiterranean coastal waters"), - Administrator of various databases for coastal observation systems. Area of ​​activity ------------------ My work concerns large-scale observation and experimentation systems of terrestrial and marine (agro)ecosystems and information systems and the dissemination of biodiversity knowledge coupled with them. I am particularly interested in new methods of data mining and data representation in the form of graphs. This formalization of knowledge makes it possible to envisage the use of new methods to analyze heterogeneous data, to propose scientific questions emerging from the data (and not the reverse, which is the classical scientific approach), and to make Scenario proposals dependent on contextual variables that can be used in the area of ​​decision support. I wish to continue to invest in the development of multidisciplinary research programs and partnerships involving scientists and public actors. FAIR data management and open science addict and "Data Management Plan with FAIR Compliance" evangelizer. Themes and interests -------------------- Biodiversity Informatics, Databases, Distributed Systems, Knowledge Representation, Scientific Data Management, Data management plan, Data mining, Data Community Development, Data Visualization, Information Dissemination, Coastal Ecology, Macro-ecology, Benthos, Marine Ecology, Biodiversity Assessment, Environmental Impact Assessment, Wildlife Ecology, Biological Oceanography, Ecological restoration, Natural Resource Management, Decision support systems Recent and ongoing research programs ------------------------------------ Ongoing - [ISIDORe](https://www.isidore-project.eu/) (Integrated Services for Infectious Diseases Outbreak Research) aims to increase EU’s responsiveness and preparedness to any epidemic threats by providing an impressive range of innovative, high quality services to all scientific User communities with projects in the field of high-consequence pathogens. The ISIDORe consortium represents the biggest research instrument dedicated to the study of high consequence pathogens ever set up. Following the HERA’s incubator call for expressions of interest on SARS‑CoV\_2 variants, the ERINHA-led project ISIDORe (Integrated Services for Infectious Disease Outbreak Research) was selected as one of the first Horizon Europe actions. The ISIDORe consortium includes 154 participants from 32 countries worldwide and will contribute to research efforts on the SARS-CoV-2 variants and any other epidemic-prone pathogen, by assembling an integrated and complementary portfolio of state-of-the-art, cutting-edge services for the benefit of the scientific community. (under CE grant agreement Nº101046133) - [By-COVID](https://by-covid.eu/): The world has generated vast amounts of data in response to the COVID-19 pandemic, and is still generating more. This data comes from many different sources, and identifying, connecting and integrating it for effective analysis remains a challenge. The BeYond-COVID project aims to make COVID-19 data accessible to scientists in laboratories but also to anyone who can use it, such as medical staff in hospitals or government officials. Going beyond SARS-CoV-2 data, the project will provide a framework for making data from other infectious diseases open and accessible to everyone. (under CE grant agreement Nº101046203) - [QUAMPO](https://quampo.recherche.univ-lr.fr/) (QUAlité des Milieux côtiers POrtuaire en Haute-Corse) is developing an innovative method for monitoring water quality based on ecotoxicology techniques for measuring biomarkers in invertebrates and developing tools for port managers. - [EOSC Life](https://www.eosc-life.eu/) - EOSC-Life brings together the 13 Biological and Medical ‘ESFRI’ research infrastructures (BMS RIs) to create an open, digital and collaborative space for biological and medical research. The project will publish ‘FAIR’ data and a catalogue of services provided by participating RIs for the management, storage and reuse of data in the European Open Science Cloud (EOSC). - [PARSEC](http://parsecproject.org/) - The PARSEC project is designed to provide a unique opportunity for data and synthesis scientists to collaborate and exchange in real-time toward the goal of improving research outcomes, data sharing, and data reuse. It will also help pioneer new scientific and data science technologies aimed at improving both the management and conservation of global biodiversity. - [Foosin](https://foosin.fr/en/foosin-project/) - project is working to facilitate the progressive implementation of FAIR principles by data managers and producers in agriculture and agri-food. Improved data management will facilitate interdisciplinarity and reproducibility of work while reducing data duplication. We are particularly interested in the application of FAIR principles to semantic resources (ontologies, thesauri…) which are themselves key elements for making data more FAIR (Principle I2). - [TRAFIC](https://www.researchgate.net/project/Areas-of-potential-high-interaction-between-marine-traffic-and-marine-mammals-in-French-West-Indies) - Areas of potential high-interaction between marine traffic and marine mammals in French West Indies: this project aims at improving the knowledge on the pressure of maritime activities on the marine environment in the Caribbean Sea. In particular, a master internship focuses on studying the spatiotemporal co-occurrence between marine traffic and cetaceans. Recent - [Erinha Advance](https://www.erinha.eu/erinha-advance/) - ERINHA Research Infrastructure was successfully set up and has now entered into its operational phase. ERINHA-Advance is a H2020-funded project which aims to continue supporting the successful operation of the ERINHA Research Infrastructure to ensure its long-term sustainability. - [D2KAB](http://d2kab.mystrikingly.com/) - Data to Knowledge in Agronomy and Biodiveristy project create a framework to turn agronomy and biodiversity data into knowledge –semantically described, interoperable, actionable, open– and investigate scientific methods and tools to exploit this knowledge for applications in science & agriculture - [EPPN2020 ](https://eppn2020.plant-phenotyping.eu/ "European Plant Phénotyping Network")- (UMR MISTEA part) European Plant Phénotyping Network (Horizon 2020 research and innovation programme under grant agreement No 731013) - [IndexMeed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")- Indexing for Mining Ecological and Environmental Data : www.indexmed.eu (Funding 2016 - [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS")) - GRAMINEES - GRAphe data Mining In Natural, Ecological and Environnemental Sciences (Funding [GDR MaDICS](http://www.madics.fr "Groupement de recherche : Masses de Données, Informations et Connaissances en Sciences")) - EVACOR et EVACOR2 - EVAluation des services écosystémiques des habitats CORalligènes (1 et 2) - [VIGI-GEEK ](http://www.indexmed.eu/Defi-Imag-In.html "VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel")- VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel (Défi Imag'in, Funding [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS")) - [CHARLIE](http://www.indexmed.eu/Reponse-au-PEPS-blanc-Projet.html "CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles") - CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles (PEPS Blanc, Funding [INEE - CNRS](http://www.cnrs.fr/inee/ "Institut Ecologie et Environnement")) - [CIGESMED ](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters")- Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters (ANR conventions n° 12-SEAS-0001-01, 02 and 03 for France; GSRT - 12SEAS-12-C2 for Greece; TUBITAK Project No: 112Y393 for Turkey) - [DEVOTES ](http://www.devotes-project.eu/ "DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status")- DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status www.devotes-project.eu (European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement n°308392) - [Proteker ](http://www.proteker.net "Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation")- Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation. www.proteker.net (Programme IPEV 1044) You will find the slides of the oral presentations - not accepted in hal on researchgate: [Romain David on ResearchGate](https://www.researchgate.net/profile/Romain_David "Romain David")

Domaines de recherche

Technologies Émergeantes [cs.ET] Base de données [cs.DB] Bio-informatique [q-bio.QM] Ecosystèmes Environnement et Société Biodiversité et Ecologie

Compétences

Data Management Plan RGPD Semantic web Ecology coralligenous populations benthic populations inventories determination surveys population monitoring Botany ethnobotany cell and molecular biology Univariate and multivariate statistics graph-based data mining distributed computing Concepts of supervised or unsupervised learning deep learning Project management communication network animation Scientific Diving Web Development Accessibility standards webstack ontologies Databases Life Sciences

Publications

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“Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling

Romain David , Arina Rybina , Jean‐marie Burel , Jean‐karim Heriche , Pauline Audergon
EMBO Journal, 2023, 42 (23), ⟨10.15252/embj.2023115008⟩
Article dans une revue hal-04371171v1
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Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness

Romain David , Audrey Richard , Claire Connellan , Katharina Lauer , Maria Luisa Chiusano
CODATA Data Science Journal, 2023, DATA MANAGEMENT PLANNING ACROSS DISCIPLINES AND INFRASTRUCTURES, 22, pp.35. ⟨10.5334/dsj-2023-035⟩
Article dans une revue hal-04210490v1
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The Value of a Data and Digital Object Management Plan (D(DO)MP) in Fostering Sharing Practices in a Multidisciplinary Multinational Project

Alison Specht , Margaret O’brien , Rorie Edmunds , Pedro Corrêa , Romain David
CODATA Data Science Journal, 2023, 22, ⟨10.5334/dsj-2023-038⟩
Article dans une revue hal-04371216v1
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A review of biodiversity research in ports: Let's not overlook everyday nature!

Bénédicte Madon , Romain David , Antonio Torralba , Armelle Jung , Michel Marengo
Ocean and Coastal Management, 2023, 242, pp.106623. ⟨10.1016/j.ocecoaman.2023.106623⟩
Article dans une revue hal-04125024v1
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An iterative and interdisciplinary categorisation process towards FAIRer digital resources for sensitive life-sciences data

Romain David , Christian Ohmann , Jan-Willem Boiten , Mónica Cano Abadía , Florence Bietrix
Scientific Reports, 2022, 12 (1), pp.20989. ⟨10.1038/s41598-022-25278-z⟩
Article dans une revue hal-03885492v1
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Pilot Study on the Intercalibration of a Categorisation System for FAIRer Digital Objects Related to Sensitive Data in the Life Sciences

Christian Ohmann , Romain David , Mónica Cano Abadia , Florence Bietrix , Jan-Willem Boiten
Journal of Data Intelligence, 2022, 4 (2), pp.196 - 211. ⟨10.1162/dint_a_00126⟩
Article dans une revue hal-03663699v1
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A Deep-Learning Method for the Prediction of Socio-Economic Indicators from Street-View Imagery Using a Case Study from Brazil

Jeaneth Machicao , Alison Specht , Danton Vellenich , Leandro Meneguzzi , Romain David
CODATA Data Science Journal, 2022, 21, ⟨10.5334/dsj-2022-006⟩
Article dans une revue hal-03663799v1
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Mitigation Strategies to Improve Reproducibility of Poverty Estimations From Remote Sensing Images Using Deep Learning

Jeaneth Machicao , Imed Riadh Farah , Leonardo Meneguzzi , Corrêa Pedro Luiz Pizzigatti , Alison Specht
Earth and Space Science, 2022, 9 (8), pp.e2022EA002379. ⟨10.1029/2022ea002379⟩
Article dans une revue hal-03761874v1
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Radical collaboration during a global health emergency: development of the RDA COVID-19 data sharing recommendations and guidelines

Brian Pickering , Timea Biro , Claire Austin , Alexander Bernier , Louise Bezuidenhout
Open Research Europe, 2021, 1, pp.69. ⟨10.12688/openreseurope.13369.1⟩
Article dans une revue hal-03663823v1
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Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe Archipelago, based on citizen science

Lorraine Coché , Elie Arnaud , Laurent Bouveret , Romain David , Eric Foulquier
Biodiversity Data Journal, 2021, 9, ⟨10.3897/bdj.9.e69022⟩
Article dans une revue hal-03299950v1
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Pan‐regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures

J.K. Pearman , G. Chust , E. Aylagas , E. Villarino , J.R. Watson
Molecular Ecology, 2020, 29, pp.4882-4897. ⟨10.1111/mec.15692⟩
Article dans une revue hal-02973058v1
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Coralligenous assemblages along their geographical distribution: Testing of concepts and implications for management

Melih Ertan Çinar , Jean-Pierre Féral , Christos Arvanitidis , Romain David , Ergün Taşkin
Aquatic Conservation: Marine and Freshwater Ecosystems, 2020, 30, pp.1578 - 1594. ⟨10.1002/aqc.3365⟩
Article dans une revue hal-02892573v1
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Making experimental data tables in the life sciences more FAIR: a pragmatic approach

Daniel Jacob , Romain David , Sophie Aubin , Yves Gibon
GigaScience, 2020, 9 (12), pp.giaa144. ⟨10.1093/gigascience/giaa144⟩
Article dans une revue hal-02883355v4
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FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Romain David , Laurence Mabile , Alison Specht , Sarah Stryeck , Mogens Thomsen
CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩
Article dans une revue hal-02483307v2
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39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Caterina Caracciolo , Sophie Aubin , Clement Jonquet , Emna Amdouni , Romain David
CODATA Data Science Journal, 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩
Article dans une revue hal-03059376v1
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From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats

Aurelien de Jode , Romain David , Anne Haguenauer , Abigail Cahill , Zinovia Erga
Molecular Phylogenetics and Evolution, 2019, 137, pp.104-113. ⟨10.1016/j.ympev.2019.04.005⟩
Article dans une revue hal-02125817v1
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Application of the ecosystem service concept at a small-scale: The cases of coralligenous habitats in the North-western Mediterranean Sea

Laure Thierry de Ville d'Avray , Dominique Ami , A. Chenuil , Romain David , Jean-Pierre Feral
Marine Pollution Bulletin, 2019, 138, pp.160-170. ⟨10.1016/j.marpolbul.2018.10.057⟩
Article dans une revue hal-01933094v1
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Lessons from photo analyses of Autonomous Reef Monitoring Structures as tools to detect (bio-)geographical, spatial, and environmental effects

Romain David , Maria Uyarra , Susana Carvalho , Holger Anlauf , Angel Borja
Marine Pollution Bulletin, 2019, 141, pp.420-429. ⟨10.1016/j.marpolbul.2019.02.066⟩
Article dans une revue hal-02061256v1
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A comparative analysis of metabarcoding and morphology-based identification of benthic communities across different regional seas

Abigail Cahill , John K Pearman , Angel Borja , Laura Carugati , Susana Carvalho
Ecology and Evolution, 2018, 8 (17), pp.8908-8920. ⟨10.1002/ece3.4283⟩
Article dans une revue hal-01886882v1
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A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes

Abigail E. Cahill , Sophie Dubois , Zoheir Bouzaza , D. Aurelle , Emilie Boissin
Molecular Ecology, 2017, 26 (23), pp.6563-6577. ⟨10.1111/mec.14389⟩
Article dans une revue hal-01681650v1
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IndexMEED cases studies using "Omics" data with graph theory

Romain David , Jean-Pierre Féral , Sophie Archambeau , Fanny Arnaud , David Auber
Biodiversity Information Science and Standards, 2017, TDWG 2017 - Proceedings, 1 (2), pp.340-361. ⟨10.3897/tdwgproceedings.1.20740⟩
Article dans une revue hal-01761535v1
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An integrated method to evaluate and monitor the conservation state of coralligenous habitats: The INDEX-COR approach

Stéphane Sartoretto , Thomas Schohn , Carlo Nike Bianchi , Carla Morri , Joaquim Garrabou
Marine Pollution Bulletin, 2017, 120 (1-2), pp.222-231. ⟨10.1016/j.marpolbul.2017.05.020⟩
Article dans une revue hal-01541141v1
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Visualisation de données sous forme de graphes en archéologie. Rencontre opérationnelle des archéologues d’ArkeoGIS et des écologues d’IndexMed

Romain David , Loup Bernard , Cyrille Blanpain , Alrick Dias , Jean-Pierre Feral
Archéologies numériques, 2017, 17-1 (1), ⟨10.21494/ISTE.OP.2017.0166⟩
Article dans une revue hal-01617580v1
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CIGESMED for divers: Establishing a citizen science initiative for the mapping and monitoring of coralligenous assemblages in the Mediterranean Sea

Vasilis Gerovasileiou , Thanos Dailianis , Emmanouela Panteri , Nikitas Michalakis , Giulia Gatti
Biodiversity Data Journal, 2016, 54 (e8692), ⟨10.3897/BDJ.4.e8692⟩
Article dans une revue hal-01392025v1
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Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status.

Roberto Danovaro , Laura Carugati , Berzano Marco , Abigail E. Cahill , Susana de Carvalho Spinola
Frontiers in Marine Science, 2016, 3, pp.213. ⟨10.3389/fmars.2016.00213⟩
Article dans une revue hal-01448726v1

Insights into the practicalities of collaboration, data and code sharing across the globe

Alison Specht , Brian Minahan , Rachael Lammey , Martyn Rittman , Matt Buys
Research Data Alliance 20th Plenary (RDA P20), RDA, Mar 2023, Gothenburg, Sweden. ⟨10.5281/zenodo.7770148⟩
Communication dans un congrès hal-04371759v1
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Converging on a Semantic Interoperability Framework for the European Data Space for Science, Research and Innovation (EOSC)

Romain David , Kurt Baumann , Yann Le Franc , Barbara Magagna , Lars Vogt
2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR), 9th Joint Ontology Workshops (JOWO 2023),, Cassia Trojahn; Luiz Olavo Bonino da Silva Santos; Giancarlo Guizzardi; Clement Jonquet, Jul 2023, Sherbrooke, Québec, Canada. ⟨10.5281/zenodo.8042997⟩
Communication dans un congrès hal-04149754v1

Baleines et dauphins : des belles espèces sentinelles à étudier dans le cadre d'un OHM littoral, mais d'un abord bien complexe

Jean-Luc Jung , Iwan Le Berre , Lorraine Coché , Bénédicte Madon , Eric Foulquier
International Symposium of Labex DRIIHM 2021, Labex DRIIHM; CNRS InEE, Sep 2021, Toulouse, France. ⟨10.34972/driihm-dab5a4⟩
Communication dans un congrès hal-03353044v1

Fairness and immunogenetics

Mogens Thomsen , Laurence Mabile , Romain David , Anne Cambon-Thomsen
34th European Immunogenetics and Histocompatibility and 31st British Society for Histocompatibility and Immunogenetics Conference, Apr 2020, Glasgow, United Kingdom. pp.415-416
Communication dans un congrès hal-03128281v1
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Community ecology of coralligenous assemblages using a metabarcoding approach

Aurelien de Jode , Romain David , Jacky Dubar , J. Rostan , Dorian Guillemain
3rd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Specially Protected Areas Regional Activity Centre (SPA/RAC), Jan 2019, Antalya, Turkey. pp.41-45
Communication dans un congrès hal-02048506v1
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Building a consistent Information System in the different nodes and defining standardisation strategies

Romain David , Jean-Eudes Hollebecq , Pascal Neveu
2. Annual Meeting EPPN2020, Wageningen University and Research Centre (WUR). NLD., May 2019, Wageningen, Netherlands. 32 p
Communication dans un congrès hal-02787524v1

Developing crediting/rewarding mechanisms to foster resources (data and materials) sharing in Research: towards recommendations First draft of recommendations from the SHARC biodiversity research community

Romain David , Anna Cohen Nabeiro , Aurélie Delavaud , Alison Specht
RDA 11th Plenary meeting, Mar 2018, Berlin, Germany
Communication dans un congrès hal-01861827v1
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Analysis on the Graph Techniques for Data-mining and Visualization of Heterogeneous Biodiversity Data Sets

Víctor Méndez Muñoz , Anna Cohen-Nabeiro , Romain David , Vicente José Ivars Camáñez , Alfons Nonell-Canals
Complexis 2017, Apr 2017, Porto, Portugal. pp.144 - 151, ⟨10.5220/0006379701440151⟩
Communication dans un congrès hal-01541140v1

Strike-Alert: Towards Real-time, High Resolution Navigational Software for Whale Avoidance

Bénédicte Madon , Romain David , Linwood Linwood H. Pendleton , René Garello , Ronan Fablet
SUSTECH 2017 : 5th annual IEEE Conference on Technologies for Sustainability, Nov 2017, Phoenix, United States. ⟨10.1109/SusTech.2017.8333534⟩
Communication dans un congrès hal-01623903v1
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IndexMed projects: new tools using the CIGESMED DataBase on Coralligenous for indexing, visualizing and data mining based on graphs

Romain David , Jean-Pierre Feral , Anne Archambeau , Nicolas Bailly , Cyrille Blanpain
8th International Congress on Environmental Modelling and Software, Toulouse, France, Sabine Sauvage, José-Miguel Sánchez-Pérez, Andrea Rizzoli (Eds.), Jul 2016, Toulouse, France. pp.32, ⟨10.5281/zenodo.6047140⟩
Communication dans un congrès hal-01425559v1
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Architecture, concepts et services d'un système d'indexation de données distribuées pour l'observation à large échelle en écologie marine

Romain David , Jean-Pierre Féral , Thierry Tatoni
32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, laboratoire d’Informatique et d’Automatique pour les Systèmes (LIAS), Nov 2016, POITIERS, France
Communication dans un congrès hal-01426497v1

A first prototype for indexing, visualizing and mining heterogeneous data in Mediterranean ecology

Romain David , Jean-Pierre Feral , Sophie Gachet , Alrick Dias , Cyrille Blanpain
11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS), Kokou Yetongnon, Albert Dipanda, University Of Bourgogne, France and Richard Chbeir, University of Pau, France, Nov 2015, Bangkok, Thailand. pp. 232-239, ⟨10.1109/SITIS.2015.119⟩
Communication dans un congrès hal-01433600v1
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An ecosystem-based approach to assess the status of the Mediterranean coralligenous habitat.

S. Ruitton , Sebastien Personnic , Enric Ballesteros , Denise Bellan-Santini , Charles-François Boudouresque
RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož Slovenia. pp.153-158
Communication dans un congrès hal-01790546v1
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CIGESMED: Coralligenous based indicators to evaluate and monitor the "good environmental statut" of the Mediterranean coastal waters, a SeasEra project

Jean-Pierre Feral , Christos Arvanitidis , Anne Chenuil-Maurel , Melih Ertan Çinar , Romain David
2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia
Communication dans un congrès hal-01620607v1
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AN INTEGRATED APPROACH TO EVALUATE AND MONITOR THE CONSERVATION STATE OF CORALLIGENOUS BOTTOMS: THE INDEX-COR METHOD

Stéphane Sartoretto , Romain David , D. Aurelle , Anne Chenuil-Maurel , Dorian Guillemain
Conference: 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. ⟨10.13140/2.1.3180.6405⟩
Communication dans un congrès hal-01620618v1
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Preliminary assessment of macrobenthic assemblages of coralligenous habitats across the Mediterranean Sea

Melih Ertan Çinar , Jean-Pierre Feral , Christos Arvanitidis , Romain David , Taskin Ergun
2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions , RAC/ASP, Oct 2014, Portorož, Slovenia. pp.207-208
Communication dans un congrès hal-01790493v1
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CIGESMED’s protocol and network (Coralligenous basEd. Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)

Romain David , Sophie Dubois , Zinovia Erga , Dorian Guillemain , Laure Thierry de Ville d'Avray
5th International Symposium Monitoring of Mediterranean coastal areas: problems and measurement techniques, CNR-IBIMET Firenze, Jun 2014, Livorno, Italy. pp.828-843
Communication dans un congrès hal-01790542v1
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CIGESMED habitat's characterization: a simple ans reusable typology at the Mediterranean scale

Romain David , Christos Arvanitidis , Melih Ertan Ҫinar , Stéphane Sartoretto , A Doğan
RAC/ASP 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. pp.211-212
Communication dans un congrès hal-01620541v1
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CIGESMED. Protocols: how to implement a multidisciplinary approach on a large scale for coralligenous habitats surveys

Romain David , Christos Arvanitidis , Melih Ertan Çinar , Stéphane Sartoretto , Sophie Dubois
RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož, Slovenia. pp.66-71, ⟨10.13140/2.1.1895.0086⟩
Communication dans un congrès hal-01620550v1
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Checklist Strategies to Improve the Reproducibility of Deep Learning Experiments with an Illustration

Ali Ben Abbess , Leonardo Meneguzzi , Pedro Pizzigatti Corrêa , David Mouillot , Romain David
RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, ⟨10.5281/zenodo.6587702⟩
Poster de conférence hal-03738323v1
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Multilingual Data Challenges in Professionalizing Data Stewardship worldwide

Romain David , Alison Specht , Margaret O'Brien , Lesley Wyborn , Christina Drummond
RDA 19th Plenary meeting, part of International Data Week, Jun 2022, Seoul, South Korea. , 2022, ⟨10.5281/zenodo.6588167⟩
Poster de conférence hal-03719072v1
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Reproducing Deep Learning experiments: common challenges and recommendations for improvement

Jeaneth Machicao , Ali Ben Abbes , Leandro Meneguzzi , Pedro Corrêa , Alison Specht
RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, ⟨10.5281/zenodo.6587694⟩
Poster de conférence hal-03719090v1
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FAIRness and Immunogenetics

Mogens Thomsen , Laurence Mabile , Romain David , Anne Cambon-Thomsen
EFI (European Forest Institute ) 2021 Annual Conference, Jun 2021, Amsterdam, Netherlands. , 2021
Poster de conférence hal-03740834v1
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RDA Sensitive Data IG: A shared understanding of Sensitive Data: an update on current progress and looking to future work

Romain David , Dharma Akmon , Nichola Burton , Sarah C. Davidson , Steven Mceachern
RDA 18th Plenary, Nov 2021, Edimbourg, United Kingdom. ⟨10.5281/zenodo.5663084⟩
Poster de conférence hal-03663928v1
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Pilot study on the intercalibration of a categorisation system for FAIRer digital objects related to sensitive data in the life sciences

Romain David , Christian Ohmann, , Jan-Willem Boiten, , Steve Canham, , Maria Panagiotopoulou,
RDA Plenary 18, Nov 2021, Edimbourg, United Kingdom. , 2021
Poster de conférence hal-03663991v1
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Data dictionary cookbook for research data and software interoperability at global scale

Romain David , Laurent Bouveret , Lorraine Coché , Pedro Pizzigatti Corrêa , Rorie Edmunds
Research Data Alliance Plenary 17 (RDA P17), Apr 2021, Edinburg (virtual), United Kingdom. , Research Data Alliance Plenary 17 (RDA P17), Edinburg, remotely, 20-22 april 2021 (Session poster session), 2021, ⟨10.5281/zenodo.4683066⟩
Poster de conférence hal-03214743v1
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RDA Sensitive Data Interest Group: Goals and Roadmap

Romain David , Dharma Akmon , Nichola Burton , Steven Mceachern , Aleksandra Michalewicz
RDA 17th Plenary Meeting - Edinburgh, Apr 2021, Edinburg, United Kingdom. , 2021, ⟨10.5281/zenodo.4690571⟩
Poster de conférence hal-03226010v1
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Integrating Data Stewardship into the Research Lifecycle: A PARSEC Approach

Shelley Stall, , Romain David , Rorie Edmunds, , Laurence Mabile, , Jeaneth Machicao,
AGU Fall Meeting 2020 (#AGU2020),, Dec 2020, online everywhere, United Kingdom. , 2022
Poster de conférence hal-03740770v1
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Challenges in data and software management and sharing at the global level: the case of the PARSEC project.

Romain David , Corrêa Pedro Luiz Pizzigatti , Rorie Edmunds , Danton Ferreira Vellenich , Ana Heredia
RDA's 16th Plenary - remotely, Costa Rica, “Knowledge Ecology”, Nov 2020, San José, Costa Rica. , 2020, ⟨10.5281/zenodo.4276640⟩
Poster de conférence hal-03014752v1
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Issues and obstacles to the sharing of sensitive data in Europe, who are the stakeholders and what are their responsibilities ?

Romain David , Audrey Richard , Laurence Mabile , Diana Stepanyan , Krista Versteeg
RDA's 16th Plenary “Knowledge Ecology”, 09 - 12 November 2020, Nov 2020, remotely,, Costa Rica. , 37, 2020, ⟨10.5281/zenodo.4275835⟩
Poster de conférence hal-03007972v1
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Implementing FAIR in data sharing: who are the actors and what are their responsibilities ?

Romain David , Laurent Dollé , Alison Specht , Sarah Stryeck , Mohamed Salah Yahia
RDA Plenary P15, Mar 2020, Melbourne, Australia. , 2020, ⟨10.5281/zenodo.3743946⟩
Poster de conférence hal-02562211v1
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How to assess FAIRness to improve crediting and rewarding processes for data sharing? A step forward towards an extensive assessment grid

Romain David , Laurence Mabile , Mohamed Yahia , Anne Cambon-Thomsen , Anne-Sophie Archambeau
RDA 13th (P13) Plenary Meeting, Apr 2019, Philadelphia, United States. , 2019, ⟨10.5281/ZENODO.2625721⟩
Poster de conférence hal-02094678v1
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Favouring the sharing of samples and data in research. Crediting and rewarding

Mogens Thomsen , Romain David , Laurence Mabile , Anne Cambon-Thomsen , - Rda Interest Group Sharc
33. European Immunogenetics and Histocompatibility Conference, May 2019, Lisbonne, Portugal. Wiley Online Library, HLA, 93, 5, 2019, ⟨10.5281/ZENODO.3080701⟩
Poster de conférence hal-02734549v1
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Evaluation tool of FAIR criteria literacy and compliance to foster research data sharing

Romain David , Laurence Mabile , Mohamed Yahia , Mogens Thomsen , Anne Cambon-Thomsen
2. Open Science FAIR Conference: « Synergies for Sustainable, Open and Responsible Research », Sep 2019, Porto, Portugal. , 2019
Poster de conférence hal-02164148v1
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Favouring the sharing of samples and data in research. Crediting and Rewarding

Mogens Thomsen , Romain David , Laurence Mabile , Anne Cambon-Thomsen , Sharc Interest Rda
33rd European Immunogenetics and Histocompatibility Conference, Portugal, 8-11 May 2019, May 2019, Lisbon, Portugal. , 93 (5), pp.256-401, 2019, Special Issue: Abstracts for the 33rd European Immunogenetics and Histocompatibility Conference, Portugal, 8-11 May 2019. ⟨10.1111/tan.13518⟩
Poster de conférence hal-02150822v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard
14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩
Poster de conférence lirmm-02351000v1
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Identifying, naming and interoperating data in a Phenotyping platform network : the good, the bad and the ugly

Romain David , Jean-Eudes Hollebecq , Llorenç Cabrera Bosquet , Francois Tardieu , Pascal Neveu
2. Open Science FAIR Conference: « Synergies for Sustainable, Open and Responsible Research », Sep 2019, Porto, Portugal. , 2019
Poster de conférence hal-02164160v1
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Research data alliance - RDA an organisation towards social and technical bridges to enable the open sharing and re-use of data with full credit to FAIR (Findable, Accessible, Interoperable, Reusable) data requirements.

Anne Cambon-Thomsen , Laurence Mabile , Mogens Thomsen , Romain David
JCAD 2019, Journées Calcul Données : Rencontres scientifiques et techniques du calcul et des données., Oct 2019, Toulouse, France. , Text mainly from RDA website. www.rd-alliance.org/about-rda, 2019, ⟨10.5281/zenodo.3479152⟩
Poster de conférence hal-02310949v1
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Operationalizing and evaluating the FAIRness concept for a good quality of data sharing in Research: the RDA-SHARC-IG (SHAring Rewards and Credit Interest Group)

Romain David , Laurence Mabile , Mohamed Yahia , Anne Cambon-Thomsen , Anne-Sophie Archambeau
assemblée MaDICS 2018, Nov 2018, Strasbourg, France. , 2018, ⟨10.5281/zenodo.1745374⟩
Poster de conférence hal-01929834v1
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How to operationalize and to evaluate the FAIRness in the crediting and rewarding processes in data sharing: a first step towards a simplified assessment grid

Romain David , Laurence Mabile , Mohamed Yahia , Anne Cambon-Thomsen , Anne-Sophie Archambeau
JNSO 2018 - Journées Nationales de la Science Ouverte, Dec 2018, Paris, France. , 2018
Poster de conférence hal-01943521v2
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Results of IndexMed GRAIL Days 2016: How to use standards to build GRAphs and mIne data for environmentaL research? IndexMeed consortium for data mining in ecology

Romain David , Jean-Pierre Féral , Anne-Sophie Archambeau , Fanny Arnaud , David Auber
RDA Ninth Plenary Meeting "Data Infrastructures for Open Science", Apr 2017, Barcelona, Spain. , 2017, ⟨10.13140/RG.2.2.32504.44806⟩
Poster de conférence hal-02295974v1
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Understanding ecological functionning of ecological habitats, and building New Indicators based on Genetic Tools to assess their GES (Good Environmental Status).

Aurélien De Jode , Sophie Dubois , Zinovia Erga , Dorian Guillemain , Romain David
OT-MED, Feb 2015, Marseille, France. 2015
Poster de conférence hal-03663687v1
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The French Nature and Landscape Information System (SINP), a collaborative tool for biodiversity data, information and knowledge sharing

Agnès Pouliquen , Romain David , Alain Pibot
IFREMER. Vulnérabilité des écosystèmes côtiers au changement global et aux évènements extrêmes, Oct 2011, Biarritz, France. , 2011, ⟨10.13140/RG.2.1.4632.4242⟩
Poster de conférence hal-03731696v1
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Improving data identification and tagging for more effective decision making in agriculture

Pascal Neveu , Romain David , Clement Jonquet
Leisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2
Chapitre d'ouvrage hal-02164149v1
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CIGESMED’s protocol and network (Coralligenous based Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)

Romain David , Sophie Dubois , Zinovia Erga , Dorian Guillemain , Laure Thierry de Ville d'Avray
CNR-IBIMET Proceedings of Fifth International Symposium MONITORING OF MEDITERRANEAN COASTAL AREAS: PROBLEMS AND MEASUREMENT TECHNIQUES, , pp.828-843, 2014, 978-88-95597-19-5
Chapitre d'ouvrage hal-01620518v1
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Zones côtières et développement durable : une équation à résoudre

Jean-Pierre Feral , Romain David
A. Euzen, L. Eymard, F. Gaill. Le devéloppement durable à découvert, Le devéloppement durable à découvert (Chapter: 2-22), CNRS editions, pp.96-97, 2013, 978-2-271-07896-4
Chapitre d'ouvrage hal-01620564v1
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Share your software -SOFTWARE DOCUMENTATION AND CITATION CHECKLIST

Shelley Stall , Alison Specht , Margaret O'Brien , Jeaneth Machicao , Pedro-Luiz-Pizzigatti Corrêa
AGU; ERINHA. 2023, https://doi.org/10.5281/zenodo.7841908
Rapport hal-04179562v1
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Prepare your team for Open Science - RESEARCH/PROJECT TEAM OPEN SCIENCE PRACTICES

Shelley Stall , Alison Specht , Margaret O'Brien , Jeaneth Machicao , Pedro-Luiz-Pizzigatti Corrêa
AGU; ERINHA. 2023, https://zenodo.org/record/8043545
Rapport hal-04179564v1
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Equip your team for Open Science - RESOURCES AND GUIDANCE FOR TEAMS

Shelley Stall , Alison Specht , Margaret O'Brien , Jeaneth Machicao , Pedro-Luiz-Pizzigatti Corrêa
AGU; ERINHA. 2023, https://doi.org/10.5281/zenodo.8043645
Rapport hal-04179565v1
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DATA DOCUMENTATION AND CITATION CHECKLIST

Shelley Stall , Alison Specht , Margaret O'Brien , Jeaneth Machicao , Pedro-Luiz-Pizzigatti Corrêa
AGU; ERINHA. 2023, https://zenodo.org/record/7841823
Rapport hal-04179560v1
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BY-COVID D2.2: Data Access and Transfer across research domains and jurisdictions

Jené Cortada Aina , Philipp Gormanns , Andrea Furlani , Iris van Dam , Laura Portell-Silva
2.2, BBMRI-ERIC; EMBL-EBI; INFRAFRONTIER; Sciensano; BSC; ELIXIR-NL/VUmc; ERINHA; Lygature; CESSDA. 2023
Rapport hal-04149733v1
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Develop a Team Preservation Process - DIGITAL OBJECTS PRESERVATION CHECKLIST FOR TEAMS

Shelley Stall , Alison Specht , Margaret O'Brien , Jeaneth Machicao , Pedro-Luiz-Pizzigatti Corrêa
AGU. 2023
Rapport hal-04177045v1
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PARSEC Data and Digital Output Management Plan and Workbook

Shelley Stall , Alison Specht , Pedro-Luiz-Pizzigatti Corrêa , Romain David , Rorie Edmunds,
BELMONT Forum; AGU; ERINHA. 2023, https://zenodo.org/record/8231464
Rapport hal-04180992v1

PARSEC D(DO)MP. Project tracksheets: scholarly publications, non peer-reviewed digital outputs, dataset log, and software log.

Alison Specht , Shelley Stall , Margaret O'Brien , Pedro Luiz Pizzigatti Correa , Yasuhiro Murayama
University of Queensland; AGU; ERINHA. 2023
Rapport hal-04185433v1
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EOSC-Life -D1.3 EOSC-Life EOSC FAIR services deployment for open calls

Helen Parkinson , Philip Gribbon , Ugis Sarkans , Gesa Witt , Andrea Zaliani
D1.3, Fraunhofer-Institut für Offene Kommunikationssysteme (FOKUS Fraunhofer); EMBL; CSIC; VU; BBMRI; KNAW; UVEG; USMI; IMG; UNIMAN; LUMC; EATRIS; UNIMIB; EBI; ECRIN; EMBRC; EMPHASIS (FZJ); ERINHA; INFRAFRONTIER; INRAE; UNIVDUN; HMGU; CERBM; BSCRC; UOULU; CRRMMP. 2022
Rapport hal-04161824v1
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RDA for Data Management Planning Community Cross-fertilisation Workshop Summary

Tomasz Miksa , Francis P. Crawley , Elisha Wood-Charlson , Paulette Lieby , Jonathan Petters
Research Data Alliance. 2022
Rapport hal-03892700v1
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Repository Guidelines

Rorie Edmunds, , Alison Specht, , Shelley Stall, , Romain David , Laurence Mabile,
[Research Report] 1, PARSEC. 2022
Rapport hal-03738319v1
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D4.1 EOSC-Life Requirements for hosting/ distributing and access control for sensitive data

Eva García-Álvarez , Christian Ohmann , Gary Saunders , Harald Wagener , Ilaria Colussi
D4.1, ECRIN; BBMRI-ERIC; EATRIS; Charité; Lygature; ERINHA; EMBRC; INFRAFRONTIER; EuroBioImaging. 2022
Rapport hal-04161744v1
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BY-COVID D3.2: Implementation of cloud-based, high performance, scalable indexing system.

Henning Hermjakob , Mari Kleemola , Katja Moilanen , Markus Tuominen , Susanna-Assunta Sansone
3.2, ELIXIR-Hub; EMBL-EBI; CESSDA/TAU-FSD; ERINHA; UOXF; ECRIN; ELIXIR-NL/VUmc; ELIXIR-NL; Lygature. 2022
Rapport hal-04149738v1
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D8.1 EOSC-Life Methodology framework to enhance reproducibility within EOSC-Life – revised version

Florence Bietrix , José-Maria Carazo , Salvador Capella-Gutierrez , Frederik Coppens , Maria-Luisa Chiusano
EOSC-Life; INFRAFRONTIER; VIB; EMBRC; ERINHA; IRFMN; EMBL-HD; UNIMAN; Fraunhofer; BBMRI-ERIC; NKI; EMBL-EBI; CSR4; HU; CSIC; BSC. 2022
Rapport hal-04161693v1
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Community-driven Governance of FAIRness Assessment: An Open Issue, an Open Discussion Authorship Community

Mark D. Wilkinson , Susanna-Assunta Sansone , Eva Méndez , Romain David , Richard Dennis
EOSC Association; EOSC. 2022, pp.10.5281/zenodo.7390482
Rapport hal-03888650v1
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TOWARDS A DATA QUALITY FRAMEWORK FOR EOSC Authorship Community

Carlo Lacagnina , Romain David , Anastasija Nikiforova , Mari-Elisa Kuusniemi , Cinzia Cappiello
EOSC Association. 2022
Rapport hal-04017152v1
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BY-COVID - D3.1 - Metadata standards.

Henning Hermjakob , Mari Kleemola , Katja Moilanen , Markus Tuominen , Susanna-Assunta Sansone
3.1, EMBL; CESSDA; ERINHA; CESSDA/TAU-FSD; ECRIN,; ELIXIR-NL/VUmc; ELIXIR-NL; Lygature; ELIXIR-UK/UNIMAN; UOXF. 2022, pp.3.1
Rapport hal-04149751v1
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EOSC-Life Report on data standards for observational and interventional studies, and interoperability between healthcare and research data

Steve Canham , Christian Ohmann , Jan-Willem Boiten , Maria Panagiotopoulou , Nigel Hughes
EOSC-Life. 2021
Rapport hal-04017153v1
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EOSC-Life D4.3 - Guidance and policy on standards and tools to facilitate sharing and reuse of multimodal data (including imaging), cohort integration, and biosamples

Jan-Willem Boiten , Christian Ohmann , Ayodeji Adeniran , Steve Canham , Monica Cano-Abadia
4.3, ECRIN; BBMRI; IRFMN; EU-OPENSCREEN; ELIXIR; VHIR; Charité; UNITO; Lygature; INSERM; EMBRC; ERINHA; EATRIS. 2021
Rapport hal-04161974v1
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EOSC-Life D3.2 Report on the work of the initial demonstrators

Frauke Leitner , Maria Carazo Jose , Johanna Bischof , Natalie Haley , Pauline Audergon
Instruct-ERIC; CSIC; BSC; CRG; EMBL-HD; INRAE; CNRS; CCMAR; EMBRC ERIC; ALUFR; UNIVDUN; UNITO; ERINHA; CNR; FZJ; UNIMAN; NIB; UNI Bielefeld; Fraunhofer; Diamond; IMG; EATRIS. 2021
Rapport hal-04161943v1
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PARSEC DDOMP Workbook Checklist

Shelley Stall , Alison Specht , Pizzigatti Pedro Luiz , Romain David , Rorie Edmunds
[Research Report] 1, AGU. 2021
Rapport hal-03738316v1
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EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description

Willem Boiten, Jan , Christian Ohmann, , Ayodeji Adeniran, , Steve Canham, , Monica Cano Abadia,
[Research Report] EATRIS/Lygature; ECRIN; CRS4; Charité; BBMRI; INSERM; EMBRC; ERINHA; EATRIS/IRFMN; EU-OPENSCREEN; IME; ELIXIR. 2021
Rapport hal-03739125v1
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Manage your Digital Objects – Research Team Member Checklist

Shelley Stall, , Alison Specht, , Pizzigatti Corrêa, Pedro Lui , Romain David , Laurence Mabile,
[Research Report] PARSEC. 2021
Rapport hal-03738318v1
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EOSC-Life D1.2 EOSC repository deployment for project demonstrators

Helen Parkinson , Philip Gribbon , Ugis Sarkans , Gesa Witt , Andrea Zaliani
1.2, Fraunhofer-Institut für Offene Kommunikationssysteme (FOKUS Fraunhofer); EMBL; VU; KNAW; BBMRI; UVEG; USMI; IMG; CNRI; UNIMAN; LUMC; EATRIS; INRAE; ECRIN; EMBRC; EMPHASIS (FZJ); ERINHA; INFRAFRONTIER; UNIMIB; UNIVDUN; HMGU; CERBM; BSCRC; UOULU; CIRMMP; CSIC. 2021
Rapport hal-04162006v1

EOSC-Life WP4 Toolbox: Categorisation system for resources to be referenced in the toolbox for sharing of sensitive data

Christian Ohmann, , Steve Canham, , Jan-Willem Boiten, , Mónica Cano Abadía , Gautier Chassang,
[Research Report] ECRIN. 2020
Rapport hal-03739126v1
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CIGESMED for divers - Citizen Science for CIGESMED

Giulia Gatti , Laure Thierry de Ville d'Avray , Romain David , Dimitriadis Charampalos , Vasilis Gerovasileiou
[Technical Report] IMBE Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale. 2016
Rapport hal-02156469v1
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CIGESMED : Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the Mediterranean coastal waters

Jean-Pierre Feral , Christos Arvanitidis , Anne Chenuil , Melih Ertan Çinar , Romain David
[Research Report] ANR. 2016, 107 pp
Rapport hal-01448881v1