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Romain DAVID,


PhD Océanographie - Fouille de données à l'Institut Ecologie et Environnement du CNRS

Laboratoire IMBE (UMR 7263)

  • Initiateur et animateur du consortium IndexMed devenu depuis IndexMeed 
  • WP Leader du programme européen CIGESMED
  • Administrateur de différentes bases de données concernant des systèmes d'observations côtiers

Domaine d’activité

Mes travaux concernent  les systèmes d’observation à large échelle des écosystèmes côtiers et les systèmes d'information et de la valorisation de la connaissance sur la biodiversité qui y sont couplés. Je m'intéresse particulièrement aux nouvelles méthodes de fouille de données et à la représentation des données sous forme de graphes. Cette formalisation de la connaissance permet d'envisager l'usage de nouvelles méthodes d'analyse de données hétérogènes, de proposer des questionnements scientifiques émergeant des données (et non l'inverse, qui est l'approche scientifique classique), et de faire des propositions de scenarios dépendant de variables de contextes utilisables dans le domaine de l'aide à la décision. Je souhaite continuer à m’investir dans le développement de programmes de recherches pluri voire transdisciplinaires et des partenariats associant scientifiques et acteurs publics.

Thèmes et intérêts

Informatique dans le domaine de la biodiversité, bases de données, représentations des connaissances, gestion de données scientifiques, Plan de gestion de données, fouille de données, développement de communautés autour de la donnée, visualisation de données, dissémination

Ecologie côtière, Macro-écologie, Benthos, écologie Marine,  suivi de la Biodiversité, suivi des impacts environnementaux, Océanographie biologique, Restauration écologique, Gestion des ressources en Milieu marin, systèmes d’aide à la décision

Programmes de recherches récents et en cours

  • IndexMeed - Indexing for Mining Ecological and Environmental Data : www.indexmed.eu (Financement 2016 - MI du CNRS)
  • GRAMINEES - GRAphe data Mining In Natural, Ecological and Environnemental Sciences (Financement GDR MaDICS)
  • EVACOR et EVACOR2 - EVAluation des services écosystémiques des habitats CORalligènes (1 et 2)
  • VIGI-GEEK - VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel  (Défi Imag'in, Financement MI du CNRS)
  • CHARLIE - CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles (PEPS Blanc, Financement INEE - CNRS)
  • CIGESMED - Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters (ANR conventions n° 12-SEAS-0001-01, 02 and 03 for France; GSRT - 12SEAS-12-C2 for Greece; TUBITAK Project No: 112Y393 for Turkey)
  • DEVOTES - DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status www.devotes-project.eu (European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement n°308392)
  • Proteker - Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation. www.proteker.net (Programme IPEV 1044)


Communication dans un congrès12 documents

  • Víctor Méndez Muñoz, Anna Cohen-Nabeiro, Romain David, Vicente Ivars Camáñez, Alfons Nonell-Canals, et al.. Analysis on the Graph Techniques for Data-mining and Visualization of Heterogeneous Biodiversity Data Sets. Complexis 2017, Apr 2017, Porto, Portugal. pp.144 - 151, 2017, Proceedings of the 2nd International Conference on Complexity, Future Information Systems and Risk (COMPLEXIS 2017). 〈http://www.complexis.org/?y=2017〉. 〈10.5220/0006379701440151〉. 〈hal-01541140〉
  • Bénédicte Madon, Romain David, René Garello, Linwood Pendleton, Ronan Fablet. Strike-Alert: Towards Real-time, High Resolution Navigational Software for Whale Avoidance. SUSTECH 2017 : 5th annual IEEE Conference on Technologies for Sustainability, Nov 2017, Phoenix, United States. 2017, 〈http://sites.ieee.org/sustech/〉. 〈hal-01623903〉
  • Romain David, J.-P Féral, T Tatoni. Architecture, concepts et services d'un système d'indexation de données distribuées pour l'observation à large échelle en écologie marine. 32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, Nov 2016, POITIERS, France. BDA 2016 2016, 〈https://bda2016.ensma.fr/index.html〉. 〈hal-01426497〉
  • Romain David, Jean-Pierre Feral, Anne Archambeau, Nicolas Bailly, Cyrille Blanpain, et al.. IndexMed projects: new tools using the CIGESMED DataBase on Coralligenous for indexing, visualizing and data mining based on graphs. Toulouse, France, Sabine Sauvage, José-Miguel Sánchez-Pérez, Andrea Rizzoli (Eds.). 8th International Congress on Environmental Modelling and Software, Jul 2016, Toulouse, France. Brigham Young University BYU Scholars Archive, International Environmental Modelling and Software Society (iEMSs) 8th International Congress on Environmental Modelling and Software Toulouse, France, Sabine Sauvage, José-Miguel Sánchez-Pérez, Andrea Rizzoli (Eds.) http://www.iemss.org/society/index.php/iemss-2016-proceedings, 8th, pp.32, 2016, International Congress on Environmental Modelling and Soft ware. 〈http://scholarsarchive.byu.edu/iemssconference/2016/?utm_source=scholarsarchive.byu.edu%2Fiemssconference%2F2016%2FStream-C%2F32&utm_medium=PDF&utm_campaign=PDFCoverPages〉. 〈hal-01425559〉
  • Romain David, Jean-Pierre Feral, Sophie Gachet, Alrick Dias, Cyrille Blanpain, et al.. A first prototype for indexing, visualizing and mining heterogeneous data in Mediterranean ecology: within the IndexMed consortium interdisciplinary framework. 11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS), Nov 2015, Bangkok, Thailand. IEEE Explore, 2015 11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS), pp. 232-239, 2015, 11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS). 〈http://ieeexplore.ieee.org/document/7400571/〉. 〈10.1109/SITIS.2015.119〉. 〈hal-01433600〉
  • Sandrine Ruitton, Sebastien Personnic, Enric Ballesteros, Denise Bellan-Santini, Charles-Francois Boudouresque, et al.. An ecosystem-based approach to assess the status of the Mediterranean coralligenous habitat.. RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, Oct 2014, Portorož Slovenia. RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, 2, pp.153-158, 2015, Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions. 〈hal-01790546〉
  • Jean-Pierre Feral, Christos Arvanitidis, Anne Chenuil-Maurel, Melih Ertan Çinar, Romain David, et al.. CIGESMED: Coralligenous based indicators to evaluate and monitor the "good environmental statut" of the Mediterranean coastal waters, a SeasEra project. 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. Proceedings of the 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions. 〈hal-01620607〉
  • Romain David, Christos Arvanitidis, Melih Ertan Ҫinar, Stéphane Sartoretto, A DoĞan, et al.. CIGESMED habitat's characterization: a simple ans reusable typology at the Mediterranean scale . Bouafif C., Langar H. & Ouerghi A. RAC/ASP 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. Conservation of Coralligenous & other Calcareous Bio-Concretions, pp.211-212, 2015, Proceedings of RAC/SPA 2nd MEd.iterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions. 〈hal-01620541〉
  • Stéphane Sartoretto, Romain David, Didier Aurelle, Anne Chenuil-Maurel, Dorian Guillemain, et al.. AN INTEGRATED APPROACH TO EVALUATE AND MONITOR THE CONSERVATION STATE OF CORALLIGENOUS BOTTOMS: THE INDEX-COR METHOD. Conference: 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. 2014, 〈10.13140/2.1.3180.6405〉. 〈hal-01620618〉
  • Romain David, Christos Arvanitidis, Melih Ertan Çinar, Stéphane Sartoretto, Sophie Dubois, et al.. CIGESMED. Protocols: how to implement a multidisciplinary approach on a large scale for coralligenous habitats surveys. Bouafif C., Langar H. & Ouerghi A. RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, Oct 2014, Portorož, Slovenia. Conservation of coralligenous and other calcareous bio-concretions, pp.66-71, 2015, Proceedings of RAC/SPA 2nd MEd.iterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions. 〈10.13140/2.1.1895.0086〉. 〈hal-01620550〉
  • Melih Ertan Çinar, Jean-Pierre Feral, Christos Arvanitidis, Romain David, Taskin Ergun, et al.. Preliminary assessment of macrobenthic assemblages of coralligenous habitats across the Mediterranean Sea. Bouafif C., Langar H. & Ouerghi A. 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions , Oct 2014, Portorož, Slovenia. Proceedings of RAC/SPA 2nd MEditerranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, pp.207-208, 2015, Proceedings of RAC/SPA 2nd MEditerranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions. 〈http://www.rac-spa.org/sites/default/files/symposium/proc2symp_msc_cbc_final.pdf〉. 〈hal-01790493〉
  • Romain David, Sophie Dubois, Zinovia Erga, Dorian Guillemain, Laure Thierry de Ville d'Avray, et al.. CIGESMED’s protocol and network (Coralligenous basEd. Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters). Fabrizio Benincasa. 5th International Symposium Monitoring of Mediterranean coastal areas: problems and measurement techniques, Jun 2014, Livorno, Italy. Proceedings of Fifth International Symposium MONITORING OF MEDITERRANEAN COASTAL AREAS: PROBLEMS AND MEASUREMENT TECHNIQUES, 5, pp.828-843, 2014, MONITORING OF MEDITERRANEAN COASTAL AREAS: PROBLEMS AND MEASUREMENT TECHNIQUES. 〈hal-01790542〉

Article dans une revue6 documents

  • Romain David, Loup Bernard, Cyrille Blanpain, Alrick Dias, Jean-Pierre Feral, et al.. Visualisation de données sous forme de graphes en archéologie. Rencontre opérationnelle des archéologues d’ArkeoGIS et des écologuesd’IndexMed . Digital Archaeology, iste open science, 2017, 17-1 (1), 〈https://www.openscience.fr/Data-visualisation-in-archaeology-based-on-graph-approach-Operational-meeting〉. 〈hal-01617580〉
  • Abigail E. Cahill, Aurelien De Jode, Sophie Dubois, Zoheir Bouzaza, Didier Aurelle, et al.. A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes. Molecular Ecology, Wiley, 2017, 26 (23), pp.6563-6577. 〈10.1111/mec.14389〉. 〈hal-01681650〉
  • Stéphane Sartoretto, Thomas Schohn, Carlo Bianchi, Carla Morri, Joaquim Garrabou, et al.. An integrated method to evaluate and monitor the conservation state of coralligenous habitats: The INDEX-COR approach. Marine Pollution Bulletin, Elsevier, 2017, 120 (1-2), pp.222-231. 〈10.1016/j.marpolbul.2017.05.020〉. 〈hal-01541141〉
  • Romain David, Jean-Pierre Féral, Sophie Archambeau, Fanny Arnaud, David Auber, et al.. IndexMEED cases studies using "Omics" data with graph theory. Biodiversity Information Science and Standards, Sofia : Pensoft Publishers, 2017-, 2017, TDWG 2017 - Proceedings 1 (2), pp.340-361. 〈10.3897/tdwgproceedings.1.20740〉. 〈hal-01761535〉
  • Vasilis Gerovasileiou, Thanos Dailianis, Emmanouela Panteri, Nikitas Michalakis, Giulia Gatti, et al.. CIGESMED for divers: Establishing a citizen science initiative for the mapping and monitoring of coralligenous assemblages in the Mediterranean Sea. Biodiversity Data Journal, Pensoft, 2016, 54 (e8692), 〈http://bdj.pensoft.net/〉. 〈10.3897/BDJ.4.e8692〉. 〈hal-01392025〉
  • Roberto Danovaro, Laura Carugati, Berzano Marco, Abigail E. Cahill, Susana De Carvalho Spinola, et al.. Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status.. Frontiers in Marine Science, Frontiers Media, 2016, 3, pp.213. 〈10.3389/fmars.2016.00213〉. 〈hal-01448726〉

Chapitre d'ouvrage1 document

Autre publication1 document

  • Chris Smith, Nadia Papadopoulou, Katerina Sevastou, Anita Franco, Heliana Teixeira, et al.. Report on identification of keystone species and processes across regional seas. WP6, Deliverable 6.1, DEVOTES Project. 2014, pp.1-103. 〈10.131140/2.1.2093.3929〉. 〈hal-01790558〉

Pré-publication, Document de travail1 document

  • Laure Thierry de Ville D 'Avray, Dominique Ami, Anne Chenuil, Romain David, Jean-Pierre Feral. Application of the Ecosystem Service Concept to a Local-Scale: The Cases of Coralligenous Habitats in the North-Western Mediterranean Sea. 2017. 〈halshs-01624589〉

Rapport1 document

  • Jean-Pierre Feral, Christos Arvanitidis, Anne Chenuil, Melih Ertan Çinar, Romain David, et al.. CIGESMED : Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the Mediterranean coastal waters. [Research Report] ANR. 2016, 107 pp. 〈hal-01448881〉