Nombre de documents

48


Article dans une revue11 documents

  • Joris Sansen, Gaëlle Richer, Timothée Jourde, Frédéric Lalanne, David Auber, et al.. Visual Exploration of Large Multidimensional Data Using Parallel Coordinates on Big Data Infrastructure. Biodiversity Informatics, University of Kansas, 2017, 4 (3), 〈10.3390/informatics4030021〉. 〈hal-01610951〉
  • Romain Bourqui, Isabelle Dutour, Jonathan Dubois, William Benchimol, Patricia Thebault. rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining. BMC Bioinformatics, BioMed Central, 2017, 18 (1), 〈10.1186/s12859-017-1598-8〉. 〈hal-01521081〉
  • Fleur Mougin, David Auber, Romain Bourqui, Gayo Diallo, Isabelle Dutour, et al.. Visualizing omics and clinical data: which challenges for dealing with their variety?. Methods, Elsevier, 2017, 〈10.1016/j.ymeth.2017.08.012〉. 〈hal-01584908〉
  • Patricia Thebault, Romain Bourqui, Benchimol William, Christine Gaspin, Pascal Sirand-Pugnet, et al.. Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.. Briefings in Bioinformatics, Oxford University Press (OUP), 2014, pp.1-11. 〈10.1093/bib/bbu045〉. 〈hal-01090907〉
  • Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan, Romain Bourqui. Communities and hierarchical structures in dynamic social networks: analysis and visualization. Social Network Analysis and Mining, Springer, 2011, 1 (2), pp.85-95. 〈10.1007/s13278-010-0002-8〉. 〈hal-00520936〉
  • Antoine Lambert, Jonathan Dubois, Romain Bourqui. Pathway Preserving Representation of Metabolic Networks. Computer Graphics Forum, Wiley, 2011, Special Issue Bergen, Norway 1 - 3 June 2011, 30 (3), pp.1021 - 1030. 〈inria-00579267〉
  • Paolo Simonetto, Daniel Archambault, David Auber, Romain Bourqui. ImPrEd: An Improved Force-Directed Algorithm that Prevents Nodes from Crossing Edges. Computer Graphics Forum, Wiley, 2011, IEEE Symposium on visualization 2011 (EuroVis 2011), 30 (3), 〈https://diglib.eg.org/EG/DL/CGF/volume30/issue3〉. 〈inria-00605921〉
  • Antoine Lambert, Romain Bourqui, David Auber. Winding Roads: Routing edges into bundles. Computer Graphics Forum, Wiley, 2010, 29 (3), pp.853-862. 〈hal-00495279〉
  • Romain Bourqui, Paolo Simonetto, Fabien Jourdan. Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques. Revue des Nouvelles Technologies de l'Information, Hermann, 2009, pp.337-348. 〈hal-00406437〉
  • Romain Bourqui, L. Cottret, V. Lacroix, D. Auber, P. Mary, et al.. Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Biology, BioMed Central, 2007, 1 - n°29, pp.1-19. 〈hal-00434765〉
  • Romain Bourqui, D. Auber, V. Lacroix, F. Jourdan. Metabolic network visualization using constraint planar graph drawing algorithm. incollection, 2006, --, pp.489-496. 〈hal-00427907〉

Communication dans un congrès29 documents

  • Alexandre Perrot, Romain Bourqui, Nicolas Hanusse, David Auber. HeatPipe: High Throughput, Low Latency Big Data Heatmap with Spark Streaming. IV2017 - 21st International Conference on Information Visualisation, Jul 2017, Londres, United Kingdom. 〈http://www.graphicslink.co.uk/IV2017/〉. 〈hal-01516888〉
  • Aarón Ayllón-Benítez, Fleur Mougin, Jesualdo Tomás Fernández-Breis, Manuel Quesada Martinez, Patricia Thebault, et al.. Deciphering gene sets annotations with ontology based visualization. 21 st International conference information visualisation, Jul 2017, London, United Kingdom. 〈hal-01524572〉
  • Joris Sansen, Patricia Thebault, Isabelle Dutour, Romain Bourqui. Visualization of sRNA-mRNA Interaction Predictions. 20th International Conference Information Visualisation (IVS 2016), Jul 2016, Lisbonne, Portugal. pp.342-347, 2016, 2016 20th International Conference Information Visualisation 〈10.1109/IV.2016.14〉. 〈hal-01559083〉
  • Romain Giot, Romain Bourqui, Nicholas Journet, Anne Vialard. Audit d’une base de documents étiquetée. Colloque International Francophone sur l’Écrit et le Document 2016 (CIFED), Mar 2016, Toulouse, France. Colloque International Francophone sur l’Écrit et le Document 2016 (CIFED), pp.153-166, 2016, 〈https://www.irit.fr/sdnri2016/cifed.php〉. 〈hal-01286564〉
  • Romain Bourqui, Dino Ienco, Arnaud Sallaberry, Pascal Poncelet. Multilayer Graph Edge Bundling. PacificVis: Pacific Visualization Symposium, Apr 2016, Taipei, Taiwan. IEEE, 9th IEEE Pacific Visualization Symposium, pp.184-188, 2016. 〈lirmm-01304602〉
  • Romain Giot, Romain Bourqui, Mohamad El-Abed. Zoo Graph: a New Visualisation for Biometric System Evaluation. Information Visualisation 2016 (IV2016), Jul 2016, Lisbonne, Portugal. 2016, Proceedings of Information Visualisation 2016 (IV2016). 〈http://www.graphicslink.co.uk/〉. 〈hal-01355690〉
  • Alexandre Perrot, Romain Bourqui, Nicolas Hanusse, Frédéric Lalanne, David Auber. Large Interactive Visualization of Density Functions on Big Data Infrastructure. 5th IEEE Symposium on Large Data Analysis and Visualization, Oct 2015, Chicago, United States. 〈hal-01188721〉
  • Joris Sansen, Romain Bourqui, Bruno Pinaud, Helen Purchase. Edge Visual Encodings in Matrix-Based Diagrams. Information Visualisation (iV), 2015 19th International Conference on , Jul 2015, barcelone, Spain. Information Visualisation (iV), 2015 19th International Conference on pp.62 - 67, Information Visualisation (iV), 2015 19th International Conference on 〈10.1109/iV.2015.22〉. 〈hal-01189166〉
  • Joris Sansen, Frédéric Lalanne, David Auber, Romain Bourqui. Adjasankey: Visualization of huge hierarchical weighted and directed graphs. Conference on Information Visualisation (IV'15), Jul 2015, barcelone, Spain. Information Visualisation (iV), 2015 19th International Conference on pp.211 - 216, 2015, Information Visualisation (iV), 2015 19th International Conference on 〈10.1109/iV.2015.46〉. 〈hal-01189106〉
  • Romain Giot, Romain Bourqui, Nicholas Journet, Anne Vialard. Visual Graph Analysis for Quality Assessment of Manually Labelled Documents Image Database. 13th International Conference on Document Analysis and Recognition (ICDAR 2015), Aug 2015, Tunis, Tunisia. pp.7, 2015, Proceedings of the 13th International Conference on Document Analysis and Recognition (ICDAR 2015). 〈hal-01170011〉
  • Romain Giot, Romain Bourqui. Fast Graph Drawing Algorithm Revealing Networks Cores. Proceedings of the 19th International Conference Information Visualisation, Jul 2015, Barcelone, Spain. 2015. 〈hal-01170017〉
  • Jonathan Dubois, Amine Ghozlane, Patricia Thébault, Isabelle Dutour, Romain Bourqui. A visualization approach to analyse bacterial sRNA-mediated regulatory networks. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. pp.Poster, 2013. 〈hal-00838731〉
  • Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, et al.. Visualization of time-series data in the context of metabolic networks with Systrip Software. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. 2013. 〈hal-00838725〉
  • Jonathan Dubois, Amine Ghozlane, Patricia Thebault, Isabelle Dutour, Romain Bourqui. Genome-wide detection of sRNA targets with rNAV. Symposium on Biological Data Visualization, Oct 2013, Atlanta, United States. pp.81 - 88, 2013. 〈hal-00935443〉
  • Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, et al.. Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks. 16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204, 2012. 〈hal-00742176〉
  • Antoine Lambert, François Queyroi, Romain Bourqui. Visualizing patterns in Node-link Diagrams. 16th International Conference on Information Visualisation (IV'12), Jul 2012, Montpellier, France. pp.48-53, 2012. 〈hal-00744965〉
  • Amine Ghozlane, Jonathan Dubois, Isabelle Dutour, Romain Bourqui, Marc Breton, et al.. iRNA: Integrative pipeline for genome-wide detection of sRNA targets. "Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France. 〈hal-00695794〉
  • Romain Bourqui, Helen Purchase, Fabien Jourdan. Domain specific vs Generic Network Visualization: an evaluation with metabolic networks. Australasian Conference on User Interface, Jan 2011, Australia. pp.9-18, 2011. 〈hal-00579230〉
  • David Auber, Patrick Mary, Morgan Mathiaut, Jonathan Dubois, Antoine Lambert, et al.. Tulip: a Scalable Graph Visualization Framework. Sadok Ben Yahia and Jean-Marc Petit. Extraction et Gestion des Connaissances (EGC) 2010, Jan 2010, Hammamet, Tunisia. RNTI, RNTI E-19, pp.623-624, 2010, Extraction et Gestion des connaissances EGC'2010. 〈inria-00482563〉
  • Antoine Lambert, Romain Bourqui, David Auber. 3D Edge Bundling for Geographical Data Visualization. 14th International Conference on Information Visualization (IV'10), Jul 2010, United Kingdom. pp.329-335, 2010. 〈hal-00495307〉
  • Romain Bourqui, Michel Westenberg. Visualizing Temporal Dynamics at the Genomic and Metabolic Level. International Conference on Information Visualisation (IV'09),, Jul 2009, Spain. pp.317-322, 2009. 〈hal-00406247〉
  • Romain Bourqui, Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Umang Sharan, et al.. Detecting structural changes and command hierarchies in dynamic social networks. Advances in Social Network Analysis and Data Mining, 2009, Greece. pp.83-88, 2009. 〈hal-00406240〉
  • Romain Bourqui, David Auber. Large Quasi-Tree Drawing: A Neighborhood Based Approach. 13th International Conference on Information Visualisation, Jul 2009, Spain. pp.653-660, 2009. 〈hal-00406435〉
  • Romain Bourqui, Fabien Jourdan. Revealing subnetwork roles using contextual visualization: comparison of metabolic networks. 12th International Conference on Information Visualisation, Jul 2008, London, United Kingdom. IEEE Computer Society, pp.638-643, 2008. 〈hal-00343889〉
  • Romain Bourqui, Faraz Zaidi, Frédéric Gilbert, Umang Sharan, Paolo Simonetto. VAST 2008 Challenge: Social network dynamics using cell phone call patterns. IEEE Symposium on Visual Analytics Science and Technology, 2008, United States. 〈hal-00335647〉
  • Romain Bourqui, Fabien Jourdan. Comparaison Visuelle de Réseaux Métaboliques. 8èmes Journées Ouvertes Biologie Informatique Mathématiques, 2007, France. pp.285-286, 2007. 〈hal-00306674〉
  • Romain Bourqui, David Auber, Patrick Mary. How to Draw ClusteredWeighted Graphs using a Multilevel Force-Directed Graph Drawing Algorithm. 11th International Conference on Information Visualisation, IV 2007, Jul 2007, Sweden. pp.757-764, 2007. 〈hal-00306672〉
  • Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan. Metabolic network visualization using constraint planar graph drawing Algorithm. IV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496, 2006. 〈hal-00306676〉
  • Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan. Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques. Quatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique, 2006. 〈hal-00306673〉

Chapitre d'ouvrage5 documents

  • David Auber, Daniel Archambault, Romain Bourqui, Maylis Delest, Jonathan Dubois, et al.. Tulip III. Encyclopedia of Social Network Analysis and Mining, 2014, 978-1-4614-6169-2. 〈10.1007/978-1-4614-6170-8_315〉. 〈hal-01096759〉
  • Céline Rozenblat, Guy Melançon, Romain Bourqui, David Auber. Comparing Multilevel Clustering Methods on Weighted Graphs: The Case of Worldwide Air Passenger Traffic 2000-2004. Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.141-154, 2013. 〈hal-00841187〉
  • Antoine Lambert, Romain Bourqui, David Auber. Graph Visualization for Geography. Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.81-102, 2013. 〈hal-00841188〉
  • Romain Bourqui, Paolo Simonetto, Fabien Jourdan. A stable decomposition algorithm for dynamical social network analysis. Fabrice Guillet, Gilbert Ritschard, Djamel Abdelkader Zighed and Henri Briand. Advances in Knowledge Discovery and Management, Springer, pp.167-178, 2010, Studies in Computational Intelligence, 〈10.1007/978-3-642-00580-0_10〉. 〈hal-00543175〉
  • David Auber, Guy Melançon, Romain Bourqui. Mining Networks through Visual Analytics: Incremental Hypothesis Building and Validation. Clive Best, Françoise Fogelman Soulié. Mining Massive Data Sets for Security, IOS Press, pp.204-211, 2008, NATO Advanced Study Institute, 978-1-58603-898-4. 〈lirmm-00272781〉

Rapport2 documents

  • David Auber, Romain Bourqui, Maylis Delest, Antoine Lambert, Patrick Mary, et al.. TULIP 4. [Research Report] LaBRI - Laboratoire Bordelais de Recherche en Informatique. 2016. 〈hal-01359308〉
  • David Auber, Daniel Archambault, Romain Bourqui, Antoine Lambert, Morgan Mathiaut, et al.. The Tulip 3 Framework: A Scalable Software Library for Information Visualization Applications Based on Relational Data. [Research Report] RR-7860, INRIA. 2012, pp.31. 〈hal-00659880〉

Thèse1 document

  • Romain Bourqui. Décomposition et Visualisation de graphes : Applications aux Données Biologiques. Interface homme-machine [cs.HC]. Université Sciences et Technologies - Bordeaux I, 2008. Français. 〈tel-00421872〉