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Number of documents

188

CV

 

 

 

Position title

 

·      Professor (PUPH) of Public Health, Bordeaux University

 

·      Director the INSERM/INRIA team SISTM: Statistics in Systems Biology and Translational Medicine (Since 2013, 25 people, http://www.bordeaux-population-health.center/en/teams/statistics-in-systems-biology-and-translationnal-medicine-sistm/)

 

·      Director of the Bioinformatics/Biostatistics Division of the Vaccine Research Institute (VRI, http://vaccine-research-institute.fr/en/)

 

·      Director of the Department of research in Public Health at the Bordeaux University (Since 2019) and Deputy Director of the INSERM Research Centre U1219 (Since 2008, formally U897, 460 people, http://www.bordeaux-population-health.center/en/)

 

·      Director of the Medical Information Department at Bordeaux Hospital (Since 2019)

 

·      Director of the Digital Public Health Graduate School (Since 2018)

 

·      Member of the INSERM scientific committee (Since 2017)

 

 

 

 

 

Education

 

 

 

Institution and location

 

Degree

Year

Field of study

Bordeaux University

M.D.

2000

Public Health

Bordeaux University

Ph.D.

2002

Biostatistics

Bordeaux University

Diploma for PhD student supervision (HDR)

2004

-

 

 

 

Previous Positions

 

 

 

ü  2013-2019: Director of the Bordeaux Hospital Clinical Trial Unit (Since 2013, 25 people, http://usmr.isped.u-bordeaux2.fr)

 

ü  2012-2014: Deputy director of the Institute of Research in Public Health (IReSP http://www.iresp.net/)

 

ü  2009-2014: Deputy Director of the Bordeaux School of Public Health (ISPED) for Research (www.isped.u-bordeaux.fr)

 

ü  2002-2013: Researcher (CR2, CR1) and Research Director (DR2) at the French Institute for Health and Medical Research (INSERM), Research Centre U897 “Epidemiology and Biostatistics” (Tenure Track since 2002)

 

 

 

 

 

Teaching activities

 

ü  Director of the Master in Science “Public Health Data Science” (Since 2018)

 

ü  Responsible of the modelling unit for medical students and of the mathematics unit for medicine/science cursus

 

ü  Analysis of longitudinal data for Master Students (Since 2000, 30 hours/year) and Summer School

 

 

 

Journal articles164 documents

  • Ilaria Montagni, Nicolas Roussel, Rodolphe Thiébaut, Christophe Tzourio. Health Care Students’ Knowledge of and Attitudes, Beliefs, and Practices Toward the French COVID-19 App: Cross-sectional Questionnaire Study. Journal of Medical Internet Research, JMIR Publications, 2021, 23 (3), pp.e26399. ⟨10.2196/26399⟩. ⟨hal-03189015⟩
  • Laura Temime, Marie-Paule Gustin, Audrey Duval, Niccolò Buetti, Pascal Crepey, et al.. A Conceptual Discussion about R0 of SARS-COV-2 in Healthcare Settings. Clinical Infectious Diseases, Oxford University Press (OUP), 2021, pp.ciaa682. ⟨10.1093/cid/ciaa682⟩. ⟨hal-02859847⟩
  • Y. Levy, C. Lacabaratz, Edouard Lhomme, A. Wiedemann, Claire Bauduin, et al.. A randomized placebo-controlled efficacy study of a prime boost therapeutic vaccination strategy in HIV-1 infected individuals: VRI02 ANRS 149 LIGHT Phase II trial. Journal of Virology, American Society for Microbiology, In press, ⟨10.1128/jvi.02165-20⟩. ⟨hal-03188939⟩
  • Karine Moreau, Aurélie Desseix, Christine Germain, Pierre Merville, Lionel Couzi, et al.. Evolution of body composition following successful kidney transplantation is strongly influenced by physical activity: results of the CORPOS study. BMC Nephrology, BioMed Central, 2021, 22 (1), pp.31. ⟨10.1186/s12882-020-02214-9⟩. ⟨hal-03142794⟩
  • Guillaume Vial, Noémie Gensous, Hélène Savel, Christophe Richez, Estibaliz Lazaro, et al.. The impact of clopidogrel on plasma-soluble CD40 ligand levels in systemic lupus erythematosus patients: the CLOPUS phase I/II pilot study. Joint Bone Spine, Elsevier Masson, 2021, 88 (2), pp.105097. ⟨10.1016/j.jbspin.2020.105097⟩. ⟨hal-03142764⟩
  • Helen R. Wagstaffe, Giada Susannini, Rodolphe Thiébaut, Laura Richert, Yves Lévy, et al.. Durable natural killer cell responses after heterologous two-dose Ebola vaccination. NPJ vaccines, Nature Research 2021, 6 (1), pp.19. ⟨10.1038/s41541-021-00280-0⟩. ⟨hal-03158135⟩
  • Karine Moreau, Aurélie Desseix, Christine Germain, Pierre Merville, Lionel Couzi, et al.. Correction to: Evolution of body composition following successful kidney transplantation is strongly influenced by physical activity: results of the CORPOS study. BMC Nephrology, BioMed Central, 2021, 22 (1), ⟨10.1186/s12882-021-02258-5⟩. ⟨hal-03186351⟩
  • Sodiomon Sirima, Laura Richert, Arnaud Chêne, Amadou Konate, Cécilia Campion, et al.. PRIMVAC vaccine adjuvanted with Alhydrogel or GLA-SE to prevent placental malaria: a first-in-human, randomised, double-blind, placebo-controlled study. The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2020, 20 (5), pp.585-597. ⟨10.1016/S1473-3099(19)30739-X⟩. ⟨hal-03161802v2⟩
  • Marco Iannetta, Stéphane Isnard, Jennifer Manuzak, Jean-Baptiste Guillerme, Mathilde Notin, et al.. Conventional Dendritic Cells and Slan + Monocytes During HIV-2 Infection. Frontiers in Immunology, Frontiers, 2020, 1, ⟨10.3389/fimmu.2020.01658⟩. ⟨hal-02944641⟩
  • Lila Bouadma, Aurélie Wiedemann, Juliette Patrier, Mathieu Surénaud, Paul-Henri Wicky, et al.. Immune Alterations in a Patient with SARS-CoV-2-Related Acute Respiratory Distress Syndrome. Journal of Clinical Immunology, Springer Verlag, 2020, 40, pp.1082-1092. ⟨10.1007/s10875-020-00839-x⟩. ⟨hal-03160737v2⟩
  • Mariama Sadjo Diallo, Assia Samri, Charlotte Charpentier, Mélanie Bertine, Rémi Cheynier, et al.. A Comparison of Cell Activation, Exhaustion, and Expression of HIV Coreceptors and Restriction Factors in HIV-1- and HIV-2-Infected Nonprogressors. AIDS Research and Human Retroviruses, Mary Ann Liebert, In press, ⟨10.1089/AID.2020.0084⟩. ⟨hal-03090206⟩
  • Alexandre Duvignaud, Edouard Lhomme, Thierry Pistone, Racha Onaisi, Rémi Sitta, et al.. Home Treatment of Older People with Symptomatic SARS-CoV-2 Infection (COVID-19): A structured Summary of a Study Protocol for a Multi-Arm Multi-Stage (MAMS) Randomized Trial to Evaluate the Efficacy and Tolerability of Several Experimental Treatments to Reduce the Risk of Hospitalisation or Death in outpatients aged 65 years or older (COVERAGE trial). Trials, BioMed Central, 2020, 21 (1), ⟨10.1186/s13063-020-04619-1⟩. ⟨hal-03142773⟩
  • Marco Iannetta, Stephane Isnard, Jennifer Manuzak, Jean-Baptiste Guillerme, Karine Bailly, et al.. Conventional Dendritic Cells and Slan(+) Monocytes During HIV-2 Infection. Frontiers in Immunology, Frontiers, 2020, 11, pp.1658. ⟨10.3389/fimmu.2020.01658⟩. ⟨hal-03177503v2⟩
  • Perrine Soret, Louise-Eva Vandenborght, Florence Francis, Noémie Coron, Raphaël Enaud, et al.. Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis. Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.3589. ⟨10.1038/s41598-020-60015-4⟩. ⟨inserm-02497484⟩
  • Mathieu Chalouni, Javier Rodriguez-Centeno, Assia Samri, Julian Blanco, Natalia Stella-Ascariz, et al.. Correlation between blood telomere length and CD4+ CD8+ T-cell subsets changes 96 weeks after initiation of antiretroviral therapy in HIV-1–positive individuals. PLoS ONE, Public Library of Science, 2020, 15 (4), pp.e0230772. ⟨10.1371/journal.pone.0230772⟩. ⟨inserm-02543732⟩
  • Aurélie Wiedemann, Emile Foucat, Hakim Hocini, Cécile Lefebvre, Boris Hejblum, et al.. Long-lasting severe immune dysfunction in Ebola virus disease survivors. Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.3730. ⟨10.1038/s41467-020-17489-7⟩. ⟨hal-03160838v2⟩
  • Yves Lévy, Christine Lacabaratz, Kim Ellefsen-Lavoie, Wolfgang Stöhr, Jean-Daniel Lelièvre, et al.. Optimal priming of poxvirus vector (NYVAC)-based HIV vaccine regimens for T cell responses requires three DNA injections. Results of the randomized multicentre EV03/ANRS VAC20 Phase I/II Trial. PLoS Pathogens, Public Library of Science, 2020, 16 (6), pp.e1008522. ⟨10.1371/journal.ppat.1008522⟩. ⟨hal-03142733⟩
  • Rodolphe Thiébaut, Joanna Jongwane. Comment la modélisation peut-elle aider au développement des vaccins ?. Interstices, INRIA, 2020. ⟨hal-02929092⟩
  • Andrew Pollard, Odile Launay, Jean-Daniel Lelievre, Christine Lacabaratz, Sophie Grande, et al.. Safety and immunogenicity of a two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in adults in Europe (EBOVAC2): a randomised, observer-blind, participant-blind, placebo-controlled, phase 2 trial. The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2020, ⟨10.1016/S1473-3099(20)30476-X⟩. ⟨hal-03142752⟩
  • Marine Gauthier, Denis Agniel, Rodolphe Thiébaut, Boris Hejblum. dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (4), pp.lqaa093. ⟨10.1093/nargab/lqaa093⟩. ⟨hal-02138664⟩
  • Sébastien Cossin, Rodolphe Thiébaut. Public Health and Epidemiology Informatics: Recent Research Trends Moving toward Public Health Data Science. IMIA Yearbook of Medical Informatics, Schattauer, 2020, 29 (1), pp.231-234. ⟨10.1055/s-0040-1702020⟩. ⟨hal-03116855⟩
  • Irene Balelli, Chloé Pasin, Mélanie Prague, Fabien Crauste, Thierry van Effelterre, et al.. A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus. Journal of Theoretical Biology, Elsevier, 2020, 495, pp.110254. ⟨10.1016/j.jtbi.2020.110254⟩. ⟨hal-03160892v2⟩
  • Guillaume Vial, Noémie Gensous, Hélène Savel, Christophe Richez, Estibaliz Lazaro, et al.. The impact of clopidogrel on plasma-soluble CD40 ligand levels in systemic lupus erythematosus patients: the CLOPUS phase I/II pilot study. Joint Bone Spine, Elsevier Masson, 2020, 88 (2), pp.105097. ⟨10.1016/j.jbspin.2020.105097⟩. ⟨hal-03160699⟩
  • Édouard Lhomme, Boris Hejblum, Christine Lacabaratz, Aurélie Wiedemann, Jean-Daniel Lelièvre, et al.. Analyzing cellular immunogenicity in vaccine clinical trials: a new statistical method including non-specific responses for accurate estimation of vaccine effect. Journal of Immunological Methods, Elsevier, 2020, 477, pp.112711. ⟨10.1016/j.jim.2019.112711⟩. ⟨hal-03161945v2⟩
  • Mathieu Chalouni, Javier Rodriguez-Centeno, Assia Samri, Julian Blanco, Natalia Stella-Ascariz, et al.. Correlation between blood telomere length and CD4+ CD8+ T-cell subsets changes 96 weeks after initiation of antiretroviral therapy in HIV-1-positive individuals. PLoS ONE, Public Library of Science, 2020, 15 (4), 9 p. ⟨hal-03160741⟩
  • Louis Capitaine, Robin Genuer, Rodolphe Thiébaut. Random forests for high-dimensional longitudinal data. Statistical Methods in Medical Research, SAGE Publications, 2020, ⟨10.1177/0962280220946080⟩. ⟨hal-03066138⟩
  • Assia Samri, Mathieu Chalouni, Julià Blanco, Georg Behrens, Peter Kelleher, et al.. Influence of the ARV regimen on the early changes in plasma HIV RNA and immune activation at initiation of antiretroviral therapy in naïve HIV-1-infected patients. Journal of Acquired Immune Deficiency Syndromes, Lippincott, Williams & Wilkins, 2020, Publish Ahead of Print, ⟨10.1097/QAI.0000000000002594⟩. ⟨hal-03142789⟩
  • Stéphane Ducassou, Helder Fernandes, Hélène Savel, Yves Bertrand, Thierry Leblanc, et al.. Prospective Evaluation of the First Option, Second-Line Therapy in Childhood Chronic Immune Thrombocytopenia: Splenectomy or Immunomodulation. Journal of Pediatrics, Elsevier, 2020, ⟨10.1016/j.jpeds.2020.12.018⟩. ⟨hal-03142779⟩
  • Maider Coppry, Camille Leroyer, Marion Saly, Anne Gaëlle Venier, Celine Slekovec, et al.. Exogenous acquisition of Pseudomonas aeruginosa in intensive care units: a prospective multi-centre study (DYNAPYO study). Journal of Hospital Infection, WB Saunders, 2020, 104 (1), pp.40-45. ⟨10.1016/j.jhin.2019.08.008⟩. ⟨hal-03161089v2⟩
  • Luuk Gras, Margaret May, Lars Ryder, Adam Trickey, Marie Helleberg, et al.. Determinants of Restoration of CD4 and CD8 Cell Counts and Their Ratio in HIV-1-Positive Individuals With Sustained Virological Suppression on Antiretroviral Therapy. Journal of Acquired Immune Deficiency Syndromes, Lippincott, Williams & Wilkins, 2019, 80 (3), pp.292-300. ⟨10.1097/QAI.0000000000001913⟩. ⟨hal-03161868v2⟩
  • Elena Gonçalves, Olivia Bonduelle, Angèle Soria, Pierre Loulergue, Alexandra Rousseau, et al.. Innate gene signature distinguishes humoral versus cytotoxic responses to influenza vaccination. The Journal of clinical investigation, 2019, 129 (5), pp.1960-1971. ⟨10.1172/jci125372⟩. ⟨hal-03160706⟩
  • Cecilia Moore, Wolfgang Stohr, Laura Richert, Jean-Daniel Lelievre, Angela Crook, et al.. Multi-arm, multi-stage randomised controlled trials for evaluating therapeutic HIV cure interventions. The Lancet HIV, 2019, 6 (5), pp.e334-e340. ⟨10.1016/s2352-3018(19)30082-7⟩. ⟨hal-02426904v2⟩
  • Olivier Lucar, Mariama Sadjo Diallo, Charles Bayard, Assia Samri, Nadine Tarantino, et al.. B7-H6-mediated downregulation of NKp30 in natural killer cells contributes to HIV-2 immune escape. AIDS, Lippincott, Williams & Wilkins, 2019, 33 (1), pp.23-32. ⟨10.1097/QAD.0000000000002061⟩. ⟨hal-02307134⟩
  • Eléna Gonçalves, Olivia Bonduelle, Angèle Soria, Pierre Loulergue, Alexandra Rousseau, et al.. Innate gene signature distinguishes humoral versus cytotoxic responses to influenza vaccination. Journal of Clinical Investigation, American Society for Clinical Investigation, 2019, 129 (5), pp.1960-1971. ⟨10.1172/JCI125372.⟩. ⟨hal-03028295⟩
  • Romain Palich, Jade Ghosn, Antoine Chaillon, Valerie Boilet, Marie-Laure Nere, et al.. Viral rebound in semen after antiretroviral treatment interruption in an HIV therapeutic vaccine double-blind trial. AIDS. Official journal of the international AIDS Society, Wolters Kluwer Health, 2019, 33 (2), pp.279-284. ⟨10.1097/qad.0000000000002058⟩. ⟨hal-03161003⟩
  • Felicity Fitzgerald, Edouard Lhomme, Kathryn Harris, Julia Kenny, Ronan Doyle, et al.. Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV. Journal of Infectious Diseases, Oxford University Press (OUP), 2019, 219 (1), pp.89-100. ⟨10.1093/infdis/jiy495⟩. ⟨hal-03160724v2⟩
  • Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo, François Caron, Rodolphe Thiébaut. Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data. Annals of Applied Statistics, Institute of Mathematical Statistics, 2019, 13 (1), pp.638-660. ⟨10.1214/18-AOAS1209⟩. ⟨hal-01579063⟩
  • Hakim Hocini, Henri Bonnabau, Christine Lacabaratz, Cécile Lefebvre, Pascaline Tisserand, et al.. HIV Controllers Have Low Inflammation Associated with a Strong HIV-Specific Immune Response in Blood. Journal of Virology, American Society for Microbiology, 2019, 93 (10), pp.e01690-18. ⟨10.1128/JVI.01690-18⟩. ⟨pasteur-02549956⟩
  • Chloé Pasin, Irene Balelli, Thierry van Effelterre, Viki Bockstal, Laura Solforosi, et al.. Dynamics of the humoral immune response to a prime-boost Ebola vaccine: quantification and sources of variation. Journal of Virology, American Society for Microbiology, 2019, 93 (18), pp.e00579-19. ⟨10.1128/jvi.00579-19⟩. ⟨hal-02280792v2⟩
  • Rodolphe Thiébaut, Boris Hejblum, Hakim Hocini, Henri Bonnabau, Jason Skinner, et al.. Gene Expression Signatures Associated With Immune and Virological Responses to Therapeutic Vaccination With Dendritic Cells in HIV-Infected Individuals. Frontiers in Immunology, Frontiers, 2019, 10, ⟨10.3389/fimmu.2019.00874⟩. ⟨hal-02267014v2⟩
  • Rodolphe Thiébaut, Sebastien Cossin. Artificial Intelligence for Surveillance in Public Health. IMIA Yearbook of Medical Informatics, Schattauer, 2019, 28 (1), pp.232-234. ⟨10.1055/s-0039-1677939⟩. ⟨hal-03161020⟩
  • Quentin Le Hingrat, Charlotte Charpentier, Jade Ghosn, Rodolphe Thiébaut, Gilles Peytavin, et al.. New insights are game-changers in HIV-2 disease management. The Lancet HIV, 2019, 6 (4), pp.e214. ⟨10.1016/s2352-3018(19)30088-8⟩. ⟨hal-03160755⟩
  • Haritz Arrieta, Cyril Astrugue, Sophie Regueme, Jessica Durrieu, Aline Maillard, et al.. Effects of a physical activity programme to prevent physical performance decline in onco-geriatric patients: a randomized multicentre trial. Journal of Cachexia, Sarcopenia and Muscle, Wiley Open Access/Springer Verlag, 2019, 10 (2), pp.287-297. ⟨10.1002/jcsm.12382⟩. ⟨hal-03160734⟩
  • Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo, François Caron, Rodolphe Thiébaut. Sequential Dirichlet process mixture of skew $t$-distributions for model-based clustering of flow cytometry data. Annals of Applied Statistics, Institute of Mathematical Statistics, 2019, 13 (1), pp.638-660. ⟨hal-03161057⟩
  • Joseph Larmarange, Mamadou Diallo, Nuala Mcgrath, Collins Iwuji, Mélanie Plazy, et al.. Temporal trends of population viral suppression in the context of Universal Test and Treat: the ANRS 12249 TasP trial in rural South Africa. Journal of the International AIDS Society, BioMed Central (2008-2012) ; International Aids Society (2008-) ; Wiley (2017-), 2019, 22 (10), ⟨10.1002/jia2.25402⟩. ⟨hal-03161847v3⟩
  • Assia Samri, Charlotte Charpentier, Mariama Sadjo Diallo, Mélanie Bertine, Sophie Even, et al.. Limited HIV-2 reservoirs in central-memory CD4 T-cells associated to CXCR6 co-receptor expression in attenuated HIV-2 infection. PLoS Pathogens, Public Library of Science, 2019, 15 (5), pp.e1007758. ⟨10.1371/journal.ppat.1007758⟩. ⟨hal-03160709v2⟩
  • Perrine Soret, Marta Avalos, Linda Wittkop, Daniel Commenges, Rodolphe Thiébaut. Lasso regularization for left-censored Gaussian outcome and high-dimensional predictors. BMC Medical Research Methodology, BioMed Central, 2018, 18, pp.13. ⟨10.1186/s12874-018-0609-4⟩. ⟨hal-03160825v2⟩
  • Chloé Pasin, François Dufour, Laura Villain, Huilong Zhang, Rodolphe Thiébaut. Controlling IL-7 injections in HIV-infected patients. Bulletin of Mathematical Biology, Springer Verlag, 2018, ⟨10.1007/s11538-018-0465-8⟩. ⟨hal-03063888v2⟩
  • Fleur Mougin, David Auber, Romain Bourqui, Gayo Diallo, Isabelle Dutour, et al.. Visualizing omics and clinical data: which challenges for dealing with their variety?. Methods, Elsevier, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩. ⟨hal-03160796v2⟩
  • Daniel Commenges, Chariff Alkhassim, Raphael Gottardo, Boris P. Hejblum, Rodolphe Thiébaut. cytometree: A binary tree algorithm for automatic gating in cytometry analysis. Cytometry Part A, Wiley, 2018, 93 (11), pp.1132-1140. ⟨10.1002/cyto.a.23601⟩. ⟨hal-03161874v2⟩
  • Joseph Larmarange, Hassimiou Mamadou Diallo, Nuala Mcgrath, Collins Iwuji, Melanie Plazy, et al.. The impact of population dynamics on the population HIV care cascade: results from the ANRS 12249 Treatment as Prevention trial in rural KwaZulu-Natal (South Africa). Journal of the International AIDS Society, BioMed Central (2008-2012) ; International Aids Society (2008-) ; Wiley (2017-), 2018, Population mobility: challenges for universal HIV testing and treatment, 21 (Suppl 4), pp.e25128. ⟨10.1002/jia2.25128⟩. ⟨hal-03160878⟩
  • Laura Richert, Aurelie Wiedemann, Odile Launay, Frederic Lucht, Isabelle Poizot-Martin, et al.. T-cell and Transcriptomic Responses to Prime-boost Strategies of 3 HIV Vaccines(MVA HIV-B; LIPO-5; GTU-MultiHIV B)-ANRS/INSERM VRI01 Trial. AIDS Research and Human Retroviruses, Mary Ann Liebert, 2018, pp.16-16. ⟨hal-03160938⟩
  • Laurent Mandelbrot, Francois Kieffer, Rémi Sitta, Hélène Laurichesse-Delmas, Norbert Winer, et al.. Prenatal therapy with pyrimethamine + sulfadiazine vs spiramycin to reduce placental transmission of toxoplasmosis: a multicenter, randomized trial. American Journal of Obstetrics and Gynecology, Elsevier, 2018, 219 (4), pp.386 e1-386-e9. ⟨10.1016/j.ajog.2018.05.031⟩. ⟨hal-03161814v2⟩
  • Laura Villain, Daniel Commenges, Chloé Pasin, Mélanie Prague, Rodolphe Thiébaut. Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts. Statistics in Medicine, Wiley-Blackwell, 2018, 38 (2), pp.221-235. ⟨10.1002/sim.7957⟩. ⟨hal-03161958v2⟩
  • Collins Iwuji, Joanna Orne-Gliemann, Joseph Larmarange, Eric Balestre, Rodolphe Thiebaut, et al.. Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. Lancet HIV, Elsevier, 2018, 5 (3), pp.e116-e125. ⟨10.1016/S2352-3018(17)30205-9⟩. ⟨inserm-02093175⟩
  • Amadou Konate, Laura Richert, Arnaud Chene, Jean-Philippe Semblat, Gwenaelle Roguet, et al.. A Phase Ia/B Study To Assess The Safety And Immunogenicity Of Placental Malaria Vaccine Candidate: Preliminary Results Of The Primalvac Trial. American Journal of Tropical Medicine and Hygiene, American Society of Tropical Medicine and Hygiene, 2018, 99 (4), pp.469-469. ⟨10.1136/bmjgh-2019-EDC.35⟩. ⟨hal-03019490⟩
  • Laurent Mandelbrot, Francois Kieffer, Rémi Sitta, Hélène Laurichesse-Delmas, Norbert Winer, et al.. Prenatal therapy with pyrimethamine + sulfadiazine vs spiramycin to reduce placental transmission of toxoplasmosis: a multicenter, randomized trial. American Journal of Obstetrics and Gynecology, Elsevier, 2018, 219 (4), pp.386.e1-386.e9. ⟨10.1016/j.ajog.2018.05.031⟩. ⟨hal-01987714⟩
  • S. Hoang, A. Georget, J. Asselineau, Anne-Gaëlle Venier, Camille Leroyer, et al.. Risk factors for colonization and infection by Pseudomonas aeruginosa in patients hospitalized in intensive care units in France. PLoS ONE, Public Library of Science, In press, 13 (3), pp.e0193300. ⟨10.1371/journal.pone.0193300⟩. ⟨hal-03008120⟩
  • Aarón Ayllón-Benítez, Fleur Mougin, Julien Allali, Rodolphe Thiébaut, Patricia Thebault. A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets. PLoS ONE, Public Library of Science, 2018, 13 (11), pp.e0208037. ⟨10.1371/journal.pone.0208037⟩. ⟨hal-01938961⟩
  • Yves Levy, Clifford Lane, Peter Piot, Abdul Habib Beavogui, Mark Kieh, et al.. Prevention of Ebola virus disease through vaccination: where we are in 2018. Lancet, Elsevier, 2018, 392 (10149), pp.787-790. ⟨10.1016/S0140-6736(18)31710-0⟩. ⟨hal-03160681⟩
  • Anne-Laure Flamar, Henri Bonnabau, Sandra Zurawski, Christine Lacabaratz, Monica Montes, et al.. HIV-1 T cell epitopes targeted to Rhesus macaque CD40 and DCIR: A comparative study of prototype dendritic cell targeting therapeutic vaccine candidates. PLoS ONE, Public Library of Science, 2018, 13 (11), pp.e0207794. ⟨10.1371/journal.pone.0207794⟩. ⟨hal-03160760⟩
  • Matthew Sutton, Rodolphe Thiébaut, Benoit Liquet. Sparse partial least squares with group and subgroup structure. Statistics in Medicine, Wiley-Blackwell, 2018, 37 (23), pp.3338-3356. ⟨10.1002/sim.7821⟩. ⟨hal-03161896⟩
  • Lise Gross, Édouard Lhomme, Chloé Pasin, Laura Richert, Rodolphe Thiébaut. Ebola vaccine development: Systematic review of pre-clinical and clinical studies, and meta-analysis of determinants of antibody response variability after vaccination. International Journal of Infectious Diseases, Elsevier, 2018, 74, pp.83-96. ⟨10.1016/j.ijid.2018.06.022⟩. ⟨hal-01888913⟩
  • Collins C. Iwuji, Joanna Orne-Gliemann, Joseph Larmarange, Eric Balestre, Rodolphe Thiébaut, et al.. Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. The Lancet HIV, 2018, 5 (3), pp.e116-e125. ⟨10.1016/s2352-3018(17)30205-9⟩. ⟨hal-03161049⟩
  • Rodolphe Thiébaut, Frantz Thiessard. Artificial Intelligence in Public Health and Epidemiology. IMIA Yearbook of Medical Informatics, Schattauer, 2018, 27 (1), pp.207-210. ⟨10.1055/s-0038-1667082⟩. ⟨hal-03160811⟩
  • Daniel Commenges, Chariff Alkhassim, Raphael Gottardo, Boris Hejblum, Rodolphe Thiébaut. Cytometree: A binary tree algorithm for automatic gating in cytometry analysis. Cytometry Part A, Wiley, 2018, 93 (11), pp.1132-1140. ⟨10.1002/cyto.a.23601⟩. ⟨hal-03282826⟩
  • Rodolphe Thiebaut, Sophie Hue, Fabien Le Marec, Jean-Daniel Lelievre, Michel Dupon, et al.. Serum suppression of tumorigenicity 2 level is an independent predictor of all-cause mortality in HIV-infected patients. AIDS, Lippincott, Williams & Wilkins, 2017, 31 (17), pp.2355 - 2365. ⟨10.1097/QAD.0000000000001628⟩. ⟨hal-01666072⟩
  • Stéphane Glénet, Claire De Bisschop, Frédéric Delcambre, Rodolphe Thiébaut, Laurent Francois, et al.. No compensatory lung growth after resection in a one-year follow-up cohort of patients with lung cancer. Journal of Thoracic Disease, AME Publishing Company, 2017, 9 (10), pp.3938-3945. ⟨10.21037/jtd.2017.08.135⟩. ⟨hal-03010145⟩
  • Vincent Bouteloup, Caroline Sabin, Amanda Mocroft, Luuk Gras, Nikos Pantazis, et al.. Reference curves for CD4 T-cell count response to combination antiretroviral therapy in HIV-1-infected treatment-naïve patients. HIV Medicine, Wiley, 2017, 18 (1), pp.33 - 44. ⟨10.1111/hiv.12389⟩. ⟨hal-01579158⟩
  • Mélanie Prague, Daniel Commenges, Jon Michael Gran, Bruno Ledergerber, Jim Young, et al.. Dynamic models for estimating the effect of HAART on CD4 in observational studies: Application to the Aquitaine Cohort and the Swiss HIV Cohort Study. Biometrics, Wiley, 2017, 73 (1), pp.294 - 304. ⟨10.1111/biom.12564⟩. ⟨hal-01406614v2⟩
  • Ana Jarne, Daniel Commenges, Mélanie Prague, Yves Levy, Rodolphe Thiébaut. Modeling CD4 + T cells dynamics in HIV-infected patients receiving repeated cycles of exogenous Interleukin 7. Annals of Applied Statistics, Institute of Mathematical Statistics, 2017. ⟨hal-01579008⟩
  • Rodolphe Thiebaut, Sophie Hue, Fabien Le Marec, Jean-Daniel Lelievre, Michel Dupon, et al.. Serum ST2 level is an independent predictor of all-cause mortality in HIV-infected patients. Aquitaine Cohort, France. AIDS, Lippincott, Williams & Wilkins, 2017. ⟨hal-01671081⟩
  • Rodolphe Thiebaut, Frantz Thiessard. Public Health and Epidemiology Informatics. IMIA Yearbook of Medical Informatics, Schattauer, 2017, ⟨10.15265/IY-2017-035⟩. ⟨hal-01671095⟩
  • Anne Rechtien, Laura Richert, Hadrien Lorenzo, Gloria Martrus, Boris P. Hejblum, et al.. Systems Vaccinology Identifies an Early Innate Immune Signature as a Correlate of Antibody Responses to the Ebola Vaccine rVSV-ZEBOV. Cell Reports, Elsevier Inc, 2017, 20 (9), pp.2251 - 2261. ⟨10.1016/j.celrep.2017.08.023⟩. ⟨hal-01579246⟩
  • Marie-Quitterie Picat, Isabelle Pellegrin, Juliette Bitard, Linda Wittkop, Cécile Proust-Lima, et al.. Integrative Analysis of Immunological Data to Explore Chronic Immune T-Cell Activation in Successfully Treated HIV Patients. PLoS ONE, Public Library of Science, 2017, 12 (1), ⟨10.1371/journal.pone.0169164⟩. ⟨hal-01579159⟩
  • Roger Le Grand, Nathalie Dereuddre-Bosquet, Stefania Dispinseri, Leslie Gosse, Delphine Desjardins, et al.. Superior Efficacy of a Human Immunodeficiency Virus Vaccine Combined with Antiretroviral Prevention in Simian-Human Immunodeficiency Virus-Challenged Nonhuman Primates. Journal of Virology, American Society for Microbiology, 2016, 90 (11), pp.5315 - 5328. ⟨hal-01406364⟩
  • Mathieu Angin, Glenn Wong, Laura Papagno, Pierre Versmisse, Annie David, et al.. Preservation of Lymphopoietic Potential and Virus Suppressive Capacity by CD8+ T Cells in HIV-2-Infected Controllers.. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2016, 197 (7), pp.2787-95. ⟨10.4049/jimmunol.1600693⟩. ⟨hal-01406621⟩
  • Fumiyo Nakagawa, Ard van Sighem, Rodolphe Thiébaut, Colette Smith, Oliver Ratmann, et al.. A method to estimate the size and characteristics of HIV-positive populations using an individual-based stochastic simulation model. Epidemiology, Lippincott, Williams & Wilkins, 2016, 27 (2), pp.247-256. ⟨10.1097/EDE.0000000000000423⟩. ⟨hal-01288889⟩
  • Mariam Noelie Hema, Tristan Ferry, Michel Dupon, Lise Cuzin, Renaud Verdon, et al.. Low CD4/CD8 Ratio Is Associated with Non AIDS-Defining Cancers in Patients on Antiretroviral Therapy: ANRS CO8 (Aproco/Copilote) Prospective Cohort Study. PLoS ONE, Public Library of Science, 2016, 11 (8), pp.e0161594. ⟨10.1371/journal.pone.0161594⟩. ⟨hal-01406618⟩
  • Collins C. Iwuji, Joanna Orne-Gliemann, Joseph Larmarange, Nonhlanhla Okesola, Frank Tanser, et al.. Uptake of Home-Based HIV Testing, Linkage to Care, and Community Attitudes about ART in Rural KwaZulu-Natal, South Africa: Descriptive Results from the First Phase of the ANRS 12249 TasP Cluster-Randomised Trial. PLoS Medicine, Public Library of Science, 2016, 13 (8). ⟨hal-01406616⟩
  • Benoit Liquet, Pierre Lafaye de Micheaux, Boris P. Hejblum, Rodolphe Thiébaut. Group and sparse group partial least square approaches applied in genomics context. Bioinformatics, Oxford University Press (OUP), 2016, 32 (1), pp.35-42. ⟨10.1093/bioinformatics/btv535⟩. ⟨hal-01288891⟩
  • Roger Le Grand, Nathalie Bosquet, Stefania Dispinseri, Leslie Gosse, Delphine Desjardins, et al.. Superior efficacy of an HIV vaccine combined with ARV prevention in SHIV challenged non-human primates. Journal of Virology, American Society for Microbiology, 2016, ⟨10.1128/JVI.00230-16⟩. ⟨hal-01579552⟩
  • Rodolphe Thiébaut, Ana Jarne, Jean-Pierre Routy, Irini Sereti, Margaret Fischl, et al.. Repeated Cycles of Recombinant Human Interleukin 7 in HIV-Infected Patients With Low CD4 T-Cell Reconstitution on Antiretroviral Therapy: Results of 2 Phase II Multicenter Studies. Clinical Infectious Diseases, Oxford University Press (OUP), 2016, 62 (9), pp.1178 - 1185. ⟨hal-01406362⟩
  • Claire Hotz, Michele Boniotto, Aurélie Guguin, Mathieu Surénaud, Francette Jean-Louis, et al.. Intrinsic Defect in Keratinocyte Function Leads to Inflammation in Hidradenitis Suppurativa. Journal of Investigative Dermatology, Nature Publishing Group, 2016, 136 (9), pp.1768 - 1780. ⟨hal-01406612⟩
  • Edouard Lhomme, Laura Richert, Zoe Moodie, Chloé Pasin, Spyros A. Kalams, et al.. Early CD4+ T Cell Responses Are Associated with Subsequent CD8+ T Cell Responses to an rAd5-Based Prophylactic Prime-Boost HIV Vaccine Strategy. PLoS ONE, Public Library of Science, 2016, 11 (4). ⟨hal-01406611⟩
  • Eric Balestre, Didier Koumavi Ekouevi, Boris Tchounga, Serge Paul Eholie, Eugène Messou, et al.. Immunologic response in treatment-naïve HIV-2-infected patients: the IeDEA West Africa cohort. Journal of the International AIDS Society, BioMed Central (2008-2012) ; International Aids Society (2008-) ; Wiley (2017-), 2016, 19 (1), pp.20044. ⟨10.7448/IAS.19.1.20044⟩. ⟨hal-01288896⟩
  • Gerard Zurawski, Sandra Zurawski, Anne-Laure Flamar, Laura Richert, Ralf Wagner, et al.. Targeting HIV-1 Env gp140 to LOX-1 Elicits Immune Responses in Rhesus Macaques. PLoS ONE, Public Library of Science, 2016, 11 (4), ⟨10.1371/journal.pone.0153484⟩. ⟨hal-01389087⟩
  • Jean-Paul Viard, Alex Assuied, Yves Lévy, Jean-Claude Souberbielle, Rodolphe Thiébaut, et al.. No Positive Association between Vitamin D Level and Immune Responses to Hepatitis B and Streptococcus pneumoniae Vaccination in HIV-Infected Adults. PLoS ONE, Public Library of Science, 2016, 11 (12), pp.e0168640. ⟨10.1371/journal.pone.0168640⟩. ⟨hal-01449359⟩
  • Vedran Brezar, Nicolas Ruffin, Laura Richert, Mathieu Surénaud, Christine Lacabaratz, et al.. Decreased HIV-Specific T-Regulatory Responses Are Associated with Effective DC-Vaccine Induced Immunity. PLoS Pathogens, Public Library of Science, 2015, 11 (3), pp.e1004752. ⟨10.1371/journal.ppat.1004752⟩. ⟨hal-01288864⟩
  • Ayrin Kök, Laurent Hocqueloux, Hakim Hocini, Marie Carrière, Laurent Lefrou, et al.. Early initiation of combined antiretroviral therapy preserves immune function in the gut of HIV-infected patients. Mucosal Immunology, Nature Pub. Group, 2015, 8 (1), pp.127-140. ⟨10.1038/mi.2014.50⟩. ⟨hal-01288851⟩
  • Mathieu Surénaud, Céline Manier, Laura Richert, Rodolphe Thiébaut, Yves Levy, et al.. Optimization and evaluation of Luminex performance with supernatants of antigen-stimulated peripheral blood mononuclear cells. BMC Immunology, BioMed Central, 2015, 17 (1), pp.44. ⟨10.1186/s12865-016-0182-8⟩. ⟨inserm-01395760⟩
  • Anita Burgun, Dina V Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, et al.. Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).. Studies in Health Technology and Informatics, IOS Press, 2015, 216, pp.1005. ⟨10.3233/978-1-61499-564-7-1005⟩. ⟨hal-01232643⟩
  • Boris P. Hejblum, Jason Skinner, Rodolphe Thiébaut. Time-Course Gene Set Analysis for Longitudinal Gene Expression Data. PLoS Computational Biology, Public Library of Science, 2015, 11 (6), pp.e1004310. ⟨10.1371/journal.pcbi.1004310⟩. ⟨hal-01203446⟩
  • Elvin H Geng, Torsten B Neilands, Rodolphe Thièbaut, Mwebesa Bosco Bwana, Denis Nash, et al.. CD41 T cell recovery during suppression of HIV replication: an international comparison of the immunological efficacy of antiretroviral therapy in North America, Asia and Africa.. International Journal of Epidemiology, Oxford University Press (OUP), 2015, 44 (1), pp.251-63. ⟨hal-01288872⟩
  • Adélaide Doussau, Rodolphe Thiebaut, B. Geoerger, Patrick Schoffski, Anne Floquet, et al.. A new approach to integrate toxicity grade and repeated treatment cycles in the analysis and reporting of phase I dose-finding trials. Annals of Oncology, Elsevier, 2015, 26 (2), pp.422-428. ⟨10.1093/annonc/mdu523⟩. ⟨hal-01288869⟩
  • Jennifer Weuve, Cécile Proust-Lima, Melinda C. Power, Alden L. Gross, Scott M. Hofer, et al.. Guidelines for reporting methodological challenges and evaluating potential bias in dementia research. Alzheimer's and Dementia, Elsevier, 2015, 11 (9), pp.1098-1109. ⟨10.1016/j.jalz.2015.06.1885⟩. ⟨hal-01288885⟩
  • Xavier Paoletti, Adélaïde Doussau, Monia Ezzalfani, Elisa Rizzo, Rodolphe Thiébaut. Dose finding with longitudinal data: simpler models, richer outcomes. Statistics in Medicine, Wiley-Blackwell, 2015, 34 (22), ⟨10.1002/sim.6552⟩. ⟨hal-01288874⟩
  • Laura Richert, Edouard Lhomme, Catherine Fagard, Yves Levy, Geneviève Chêne, et al.. Recent developments in clinical trial designs for HIV vaccine research.. Human Vaccines & Immunotherapeutics, Taylor & Francis, 2015, 11 (4), pp.1022--9. ⟨10.1080/21645515.2015.1011974⟩. ⟨hal-01164644⟩
  • Carole Dufouil, Laura Richert, Rodolphe Thiébaut, Mathias Bruyand, Hélène Amieva, et al.. Diabetes and cognitive decline in a French cohort of patients infected with HIV-1. Neurology, American Academy of Neurology, 2015, 85 (12), pp.1065-1073. ⟨10.1212/WNL.0000000000001815⟩. ⟨hal-01288876⟩
  • Houssein Ayoub, Bedreddine Ainseba, Michel Langlais, Rodolphe Thiébaut. Parameters identification for a model of T cell homeostasis. Mathematical Biosciences and Engineering, AIMS Press, 2015, 12 (5), pp.917--936. ⟨10.3934/mbe.2015.12.917⟩. ⟨hal-01164668⟩
  • Pierre Duffau, Linda Wittkop, Estibaliz Lazaro, Fabien Le Marec, Céline Cognet, et al.. Association of immune-activation and senescence markers with non-AIDS-defining comorbidities in HIV-suppressed patients. AIDS, Lippincott, Williams & Wilkins, 2015, 29 (16), pp.2099-2108. ⟨10.1097/QAD.0000000000000807⟩. ⟨hal-01288887⟩
  • Hannah Kaminski, Isabelle Garrigue, Lionel Couzi, Benjamin Taton, Thomas Bachelet, et al.. Surveillance of γδ T Cells Predicts Cytomegalovirus Infection Resolution in Kidney Transplants.. Journal of the American Society of Nephrology, American Society of Nephrology, 2015, 27 (2), pp.637-645. ⟨10.1681/ASN.2014100985⟩. ⟨hal-01164667⟩
  • Ashley D. Olson, Laurence Meyer, Maria Prins, Rodolphe Thiébaut, Deepti Gurdasani, et al.. An Evaluation of HIV Elite Controller Definitions within a Large Seroconverter Cohort Collaboration. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e86719. ⟨10.1371/journal.pone.0086719⟩. ⟨hal-01368387⟩
  • Jean Gaudart, Laetitia Huiart, P. J. Milligan, Rodolphe Thiebaut, Roch Giorgi. Reproducibility issues in science, is P value really the only answer?. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (19), pp.e1934. ⟨10.1073/pnas.1323051111⟩. ⟨hal-01307492⟩
  • Rodolphe Thiébaut, Boris P. Hejblum, Laura Richert. L’analyse des « Big Data » en recherche clinique. Epidemiology and Public Health / Revue d'Epidémiologie et de Santé Publique, Elsevier Masson, 2014, 62 (1), pp.1-4. ⟨10.1016/j.respe.2013.12.021⟩. ⟨inserm-00933691⟩
  • Laura Richert, Adélaïde Doussau, Jean-Daniel Lelièvre, Vincent Arnold, Véronique Rieux, et al.. Accelerating clinical development of HIV vaccine strategies: methodological challenges and considerations in constructing an optimised multi-arm phase I/II trial design.. Trials, BioMed Central, 2014, 15 (1), pp.68. ⟨10.1186/1745-6215-15-68⟩. ⟨inserm-00955157⟩
  • Marie-Quitterie Picat, Rodolphe Thiébaut, François Lifermann, Xavier Delbrel, Daniel Adoue, et al.. T-cell activation discriminates subclasses of symptomatic primary humoral immunodeficiency diseases in adults.. BMC Immunology, BioMed Central, 2014, 15 (1), pp.13. ⟨10.1186/1471-2172-15-13⟩. ⟨inserm-00981320⟩
  • David Furman, Boris P. Hejblum, Noah Simon, Vladimir Jojic, Cornelia L. Dekker, et al.. Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (2), pp.869-74. ⟨10.1073/pnas.1321060111⟩. ⟨inserm-00933693⟩
  • Eric Ross, Frank Tanser, Pamela Pei, Marie-Louise Newell, Elena Losina, et al.. The Impact of the 2013 WHO Antiretroviral Therapy Guidelines on the Feasibility of HIV Population Prevention Trials. HIV Clinical Trials, Thomas Land Publishers, 2014, 15 (5), pp.185-98. ⟨10.1310/hct1505-185⟩. ⟨hal-01108183⟩
  • Rodolphe Thiébaut, Mélanie Prague, Daniel Commenges. [Mathematical dynamical models for personalized medicine].. médecine/sciences, EDP Sciences, 2014, 30 Spec No 2, pp.23-6. ⟨hal-01108013⟩
  • Rodolphe Thiébaut, Julia Drylewicz, Mélanie Prague, Christine Lacabaratz, Stéphanie Beq, et al.. Quantifying and Predicting the Effect of Exogenous Interleukin-7 on CD4+T Cells in HIV-1 Infection. PLoS Computational Biology, Public Library of Science, 2014, 10 (5), pp.e1003630. ⟨10.1371/journal.pcbi.1003630⟩. ⟨hal-01108204⟩
  • Karine Moreau, Aurélie Desseix, Christine Germain, Nicole Barthe, Thomas Bachelet, et al.. Body composition in 98 patients awaiting kidney transplantation.. Nutrition, Elsevier, 2014, 30 (2), pp.186-91. ⟨hal-01108163⟩
  • Yves Lévy, Rodolphe Thiébaut, Matthieu Montes, Christine Lacabaratz, Louis Sloan, et al.. Dendritic cell-based therapeutic vaccine elicits polyfunctional HIV-specific T-cell immunity associated with control of viral load.. European Journal of Immunology, Wiley-VCH Verlag, 2014, 44 (9), pp.2802-10. ⟨hal-01108024⟩
  • Nikos Pantazis, Kholoud Porter, Dominique Costagliola, Andrea de Luca, Jade Ghosn, et al.. Temporal trends in prognostic markers of HIV-1 virulence and transmissibility: an observational cohort study. Lancet HIV, Elsevier, 2014, 1 (3), pp.e119 - e126. ⟨10.1016/S2352-3018(14)00002-2⟩. ⟨hal-01579153⟩
  • Linda Wittkop, Juliette Bitard, Estibaliz Lazaro, Didier Neau, Fabrice Bonnet, et al.. Effect of cytomegalovirus-induced immune response, self antigen-induced immune response, and microbial translocation on chronic immune activation in successfully treated HIV type 1-infected patients: the ANRS CO3 Aquitaine Cohort.. Journal of Infectious Diseases, Oxford University Press (OUP), 2013, 207 (4), pp.622-7. ⟨10.1093/infdis/jis732.⟩. ⟨inserm-00936482⟩
  • Laura Richert, Sophie Hue, Hakim Hocini, Mathieu Raimbault, Christine Lacabaratz, et al.. Cytokine and gene transcription profiles of immune responses elicited by HIV lipopeptide vaccine in HIV-negative volunteers.. AIDS, Lippincott, Williams & Wilkins, 2013, 27 (9), pp.1421-31. ⟨10.1097/QAD.0b013e32835f5b60⟩. ⟨hal-00948406⟩
  • Mélanie Prague, Daniel Commenges, Jérémie Guedj, Drylewicz Julia, Rodolphe Thiébaut. NIMROD: a program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations.. Computer Methods and Programs in Biomedicine, Elsevier, 2013, 111 (2), pp.447-458. ⟨10.1016/j.cmpb.2013.04.014⟩. ⟨hal-00933752⟩
  • Mélanie Prague, Daniel Commenges, Jérémie Guedj, Julia Drylewicz, Rodolphe Thiébaut. NIMROD: a program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations.. Computer Methods and Programs in Biomedicine, Elsevier, 2013, 111 (2), pp.447-58. ⟨10.1016/j.cmpb.2013.04.014⟩. ⟨inserm-00939447⟩
  • Adélaïde Doussau, Rodolphe Thiébaut, Xavier Paoletti. Dose-finding design using mixed-effect proportional odds model for longitudinal graded toxicity data in phase I oncology clinical trials.. Statistics in Medicine, Wiley-Blackwell, 2013, 32 (30), pp.5430-47. ⟨10.1002/sim.5960⟩. ⟨hal-00936325⟩
  • Laura Richert, Rodolphe Thiébaut. Is the current use of 'positivity' thresholds meaningful for evaluating HIV-vaccine immunogenicity endpoints?. AIDS, Lippincott, Williams & Wilkins, 2013, 27 (8), pp.1362-5. ⟨10.1097/QAD.0b013e328360d52e⟩. ⟨inserm-00933696⟩
  • Linda Wittkop, Juliette Bitard, Estibaliz Lazaro, Didier Neau, Fabrice Bonnet, et al.. Effect of cytomegalovirus-induced immune response, self antigen-induced immune response, and microbial translocation on chronic immune activation in successfully treated HIV type 1-infected patients: the ANRS CO3 Aquitaine Cohort.. The Internet Journal of Infectious Diseases, Internet Scientific Publications, LLC, 2013, 207, pp.622-7. ⟨hal-01101196⟩
  • Thea Hogan, Andrey Shuvaev, Daniel Commenges, Andrew Yates, Robin Callard, et al.. Clonally diverse T cell homeostasis is maintained by a common program of cell-cycle control.. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2013, 190 (8), pp.3985-93. ⟨10.4049/jimmunol.1203213⟩. ⟨inserm-00939457⟩
  • Mélanie Prague, Daniel Commenges, Rodolphe Thiébaut. Dynamical models of biomarkers and clinical progression for personalized medicine: the HIV context.. Advanced Drug Delivery Reviews, Elsevier, 2013, 65 (7), pp.954-65. ⟨10.1016/j.addr.2013.04.004⟩. ⟨inserm-00939450⟩
  • Yves Lévy, Rodolphe Thiébaut, Monica Montes, Christine Lacabaratz, Louis Sloan, et al.. Vaccination with dendritic cells loaded with HIV-1 lipopeptides elicits broad T cell immunity and control of viral load in HIV infected patients. Retrovirology, BioMed Central, 2012, 9 (Suppl 2), pp.P328. ⟨inserm-00731768⟩
  • Margaret T May, Robert S Hogg, Amy C Justice, Bryan E Shepherd, Dominique Costagliola, et al.. Heterogeneity in outcomes of treated HIV-positive patients in Europe and North America: relation with patient and cohort characteristics.. International Journal of Epidemiology, Oxford University Press (OUP), 2012, 41 (6), pp.1807-20. ⟨10.1093/ije/dys164⟩. ⟨hal-00875138⟩
  • Benoit Liquet, Kim-Anh Lê Cao, Hakim Hocini, Rodolphe Thiébaut. A novel approach for biomarker selection and the integration of repeated measures experiments from two assays.. BMC Bioinformatics, BioMed Central, 2012, 13 (1), pp.325. ⟨10.1186/1471-2105-13-325⟩. ⟨inserm-00814235⟩
  • Rodolphe Thiébaut, Benoit Liquet, Hakim Hocini, Sophie Hue, Laura Richert, et al.. A new method for integrated analysis applied to gene expression and cytokines secretion in response to LIPO-5 vaccine in HIV-negative volunteers. Retrovirology, BioMed Central, 2012, 9 (Suppl 2), pp.P121. ⟨inserm-00731770⟩
  • Alexandra Calmy, Eric Balestre, Fabrice Bonnet, Andrew Boulle, Eduardo Sprinz, et al.. Mean CD4 cell count changes in patients failing a first-line antiretroviral therapy in resource-limited settings.. BMC Infectious Diseases, BioMed Central, 2012, 12 (1), pp.147. ⟨10.1186/1471-2334-12-147⟩. ⟨inserm-00788673⟩
  • Mélanie Prague, Daniel Commenges, Julia Drylewicz, Rodolphe Thiébaut. Treatment Monitoring of HIV Infected Patients based on Mechanistic Models. Biometrics, Wiley, 2012, 14, pp.171 - 911. ⟨10.1191/0962280205sm390oa⟩. ⟨hal-01579531⟩
  • Mathias Bruyand, Marie-Anne Vandenhende, Guillaume Marcel, Estibaliz Lazaro, Marie-Edith Lafon, et al.. CMV plasma DNAemia and risk of cancer among HIV-infected patients: a case-control study nested in the ANRS CO3 Aquitaine Cohort, France, 2002-2007.. J Clin Virol, 2011, 50 (2), pp.177-80. ⟨10.1016/j.jcv.2010.10.021⟩. ⟨hal-00594705⟩
  • Marjet Elemans, Rodolphe Thiébaut, Amitinder Kaur, Becca Asquith. Quantification of the relative importance of CTL, B cell, NK cell, and target cell limitation in the control of primary SIV-infection.. PLoS Computational Biology, Public Library of Science, 2011, 7 (3), pp.e1001103. ⟨10.1371/journal.pcbi.1001103⟩. ⟨inserm-00704808⟩
  • Benjamin Chi, Constantin Yiannoutsos, Andrew Westfall, Jamie Newman, Jialun Zhou, et al.. Universal definition of loss to follow-up in HIV treatment programs: a statistical analysis of 111 facilities in Africa, Asia, and Latin America.. PLoS Medicine, Public Library of Science, 2011, 8 (10), pp.e1001111. ⟨10.1371/journal.pmed.1001111⟩. ⟨inserm-00702729⟩
  • Julia Drylewicz, Serge Eholie, Moussa Maiga, Djimon-Marcel Zannou, Papa-Salif Sow, et al.. First-year lymphocyte T CD4+ response to antiretroviral therapy according to the HIV type in the IeDEA West Africa collaboration.. AIDS, Lippincott, Williams & Wilkins, 2010, 24 (7), pp.1043-50. ⟨inserm-00414621⟩
  • E. Kossi Déti, Rodolphe Thiébaut, Fabrice Bonnet, Sylvie Lawson-Ayayi, Michel Dupon, et al.. Prevalence and factors associated with renal impairment in HIV-infected patients, ANRS C03 Aquitaine Cohort, France.: Renal impairment in HIV infection. HIV Medicine, Wiley, 2010, 11 (5), pp.308-17. ⟨10.1111/j.1468-1293.2009.00780.x⟩. ⟨inserm-00411631⟩
  • Sandrine Reigadas, Marie-Line Andréola, Linda Wittkop, Ophélie Cosnefroy, Guerric Anies, et al.. Evolution of 2-long terminal repeat (2-LTR) episomal HIV-1 DNA in raltegravir-treated patients and in in vitro infected cells.. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2010, 65 (3), pp.434-7. ⟨10.1093/jac/dkp473⟩. ⟨hal-00522698⟩
  • Charlotte Lewden, Rodolphe Thiébaut, Faroudy Boufassa, Ali Coulibaly, Karen Malateste, et al.. Comparison of early CD4 T-cell count in HIV-1 seroconverters in Côte d'Ivoire and France: the ANRS PRIMO-CI and SEROCO cohorts.. Journal of Acquired Immune Deficiency Syndromes, Lippincott, Williams & Wilkins, 2010, 53 (2), pp.260-5. ⟨10.1097/QAI.0b013e3181b84260⟩. ⟨inserm-00416572⟩
  • Olaf-Werner Neth, Ulrike Bacher, Purnima Das, Tatjana Zabelina, Hartmut Kabisch, et al.. Influence of mannose-binding lectin genotypes and serostatus in allo-SCT: analysis of 131 recipients and donors.. Bone Marrow Transplantation, Nature Publishing Group, 2010, 45 (1), pp.13-9. ⟨10.1038/bmt.2009.90⟩. ⟨inserm-00414612⟩
  • Gaëlle Pédrono, Rodolphe Thiébaut, Ahmadou Alioum, Philippe Lesprit, Bernard Fritzell, et al.. A new endpoint definition improved clinical relevance and statistical power in a vaccine trial.: New endpoint formulation for vaccine trials. Journal of Clinical Epidemiology, Elsevier, 2009, 62 (10), pp.1054-61. ⟨10.1016/j.jclinepi.2008.10.014⟩. ⟨inserm-00339872⟩
  • Mathias Bruyand, Rodolphe Thiébaut, Sylvie Lawson-Ayayi, Pierre Joly, Annie-Jeanne Sasco, et al.. Role of uncontrolled HIV RNA level and immunodeficiency in the occurrence of malignancy in HIV-infected patients during the combination antiretroviral therapy era: Agence Nationale de Recherche sur le Sida (ANRS) CO3 Aquitaine Cohort.: Malignancy, HIV and immune deficiency. Clinical Infectious Diseases, Oxford University Press (OUP), 2009, 49 (7), pp.1109-16. ⟨10.1086/605594⟩. ⟨inserm-00391182⟩
  • Yves Levy, Christine Lacabaratz, Laurence Weiss, Jean-Paul Viard, Cecile Goujard, et al.. Enhanced T cell recovery in HIV-1-infected adults through IL-7 treatment.. Journal of Clinical Investigation, American Society for Clinical Investigation, 2009, 119 (4), pp.997-1007. ⟨10.1172/JCI38052⟩. ⟨inserm-00484803⟩
  • Linda Wittkop, Dominique Breilh, Daniel Da-Silva, Pierre Duffau, Patrick Mercié, et al.. Virological and immunological response in HIV-1-infected patients with multiple treatment failures receiving raltegravir and optimized background therapy, ANRS CO3 Aquitaine Cohort.: Response to raltegravir in heavily pre-treated patients. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2009, 63 (6), pp.1251-5. ⟨10.1093/jac/dkp114⟩. ⟨inserm-00372614⟩
  • Benoît Marin, Rodolphe Thiébaut, Heiner Bucher, Virginie Rondeau, Dominique Costagliola, et al.. Non-AIDS-defining deaths and immunodeficiency in the era of combination antiretroviral therapy.: Non-AIDS causes of death and immunodeficiency. AIDS, Lippincott, Williams & Wilkins, 2009, 23 (13), pp.1743-53. ⟨10.1097/QAD.0b013e32832e9b78⟩. ⟨inserm-00388946⟩
  • Thiebaut Rodolphe, Sarah Walker. When it is better to estimate a slope with only one point.. QJM, 2008, 101 (10), pp.821-4. ⟨10.1093/qjmed/hcn099⟩. ⟨inserm-00336900⟩
  • Didier Koumavi Ekouevi, Patrick Coffie, Renaud Becquet, Besigin Tonwe-Gold, Apollinaire Horo, et al.. Antiretroviral therapy in pregnant women with advanced HIV disease and pregnancy outcomes in Abidjan, Côte d'Ivoire.. AIDS, Lippincott, Williams & Wilkins, 2008, 22 (14), pp.1815-20. ⟨10.1097/QAD.0b013e32830b8ab9⟩. ⟨inserm-00285869⟩
  • Stéphanie Badiou, Rodolphe Thiébaut, Valérie Aurillac-Lavignolle, Francois Dabis, Frédéric Laporte, et al.. Association of non-HDL cholesterol with subclinical atherosclerosis in HIV-positive patients.: Non-HDL cholesterol and atherosclerosis in HIV patients.. Journal of Infection, WB Saunders, 2008, 57 (1), pp.47-54. ⟨10.1016/j.jinf.2008.05.007⟩. ⟨inserm-00280760⟩
  • Linda Wittkop, Daniel Commenges, Isabelle Pellegrin, Dominique Breilh, Didier Neau, et al.. Alternative methods to analyse the impact of HIV mutations on virological response to antiviral therapy.. BMC Medical Research Methodology, BioMed Central, 2008, 8 (1), pp.68. ⟨10.1186/1471-2288-8-68⟩. ⟨inserm-00333577⟩
  • Julia Drylewicz, Sophie Matheron, Estibaliz Lazaro, Florence Damond, Fabrice Bonnet, et al.. Comparison of viro-immunological marker changes between HIV-1 and HIV-2-infected patients in France.: Comparison between HIV-1 and HIV-2 in France. AIDS, Lippincott, Williams & Wilkins, 2008, 22 (4), pp.457-68. ⟨10.1097/QAD.0b013e3282f4ddfc⟩. ⟨inserm-00258131⟩
  • Charles Cazanave, Michel Dupon, Valérie Lavignolle-Aurillac, Nicole Barthe, Sylvie Lawson-Ayayi, et al.. Reduced bone mineral density in HIV-infected patients: prevalence and associated factors.: Reduced bone mineral density in HIV patients. AIDS, Lippincott, Williams & Wilkins, 2008, 22 (3), pp.395-402. ⟨10.1097/QAD.0b013e3282f423dd⟩. ⟨inserm-00186715⟩
  • Olivia Peuchant, Rodolphe Thiébaut, Sophie Capdepont, Valerie Lavignolle-Aurillac, Didier Neau, et al.. Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy.: Transmission of minority resistant HIV-1. AIDS, Lippincott, Williams & Wilkins, 2008, 22 (12), pp.1417-23. ⟨10.1097/QAD.0b013e3283034953⟩. ⟨inserm-00270200⟩
  • Jérémie Guedj, Rodolphe Thiébaut, Daniel Commenges. Practical identifiability of HIV dynamics models.. Bulletin of Mathematical Biology, Springer Verlag, 2007, 69 (8), pp.2493-513. ⟨10.1007/s11538-007-9228-7⟩. ⟨inserm-00204273⟩
  • Jérémie Guedj, Rodolphe Thiébaut, Daniel Commenges. Maximum likelihood estimation in dynamical models of HIV.. Biometrics, Wiley, 2007, 63 (4), pp.1198-206. ⟨10.1111/j.1541-0420.2007.00812.x⟩. ⟨inserm-00204269⟩
  • Rodolphe Thiébaut, Sandy Leproust, Geneviève Chêne, Ruth Gilbert. Effectiveness of prenatal treatment for congenital toxoplasmosis: a meta-analysis of individual patients' data. The Lancet, Elsevier, 2007, 369 (9556), pp.115-122. ⟨hal-00143965⟩
  • Elise Arrivé, Marie-Louise Newell, Didier Ekouevi, Marie-Laure Chaix, Rodolphe Thiébaut, et al.. Prevalence of resistance to nevirapine in mothers and children after single-dose exposure to prevent vertical transmission of HIV-1: a meta-analysis.. International Journal of Epidemiology, Oxford University Press (OUP), 2007, 36 (5), pp.1009-21. ⟨10.1093/ije/dym104⟩. ⟨inserm-00187308⟩
  • Hélène Jacqmin-Gadda, Solenne Sibillot, Cécile Proust, Jean-Michel Molina, Rodolphe Thiébaut. Robustness of the linear mixed model to misspecied error distribution: Robustness of the linear mixed model. Computational Statistics and Data Analysis, Elsevier, 2007, 51 (10), pp.5142-5154. ⟨10.1016/j.csda.2006.05.021⟩. ⟨inserm-00084214⟩
  • Rodolphe Thiébaut, Jérémie Guedj, Hélène Jacqmin-Gadda, Geneviève Chêne, Pascale Trimoulet, et al.. Estimation of dynamical model parameters taking into account undetectable marker values.. BMC Medical Research Methodology, BioMed Central, 2006, 6, pp.38. ⟨10.1186/1471-2288-6-38⟩. ⟨inserm-00101223⟩
  • Estibaliz Lazaro, Gaelle Coureau, Jérémie Guedj, Patrick Blanco, Isabelle Pellegrin, et al.. Change in T-lymphocyte count after initiation of highly active antiretroviral therapy in HIV-infected patients with history of Mycobacterium avium complex infection.. Antiviral Therapy, International Medical Press, 2006, 11 (3), pp.343-50. ⟨hal-00143964⟩
  • Rodolphe Thiébaut, Isabelle Pellegrin, Geneviève Chêne, Jean François Viallard, Hervé Fleury, et al.. Immunological markers after long-term treatment interruption in chronically HIV-1 infected patients with CD4 cell count above 400 x 10(6) cells/l.. AIDS, Lippincott, Williams & Wilkins, 2005, 19 (1), pp.53-61. ⟨hal-00143966⟩
  • Hélène Jacqmin-Gadda, Rodolphe Thiébaut. Modèles de sélection pour données longitudinales gaussiennes : application à l'étude du vieillissement cognitif. Journal de la Société Française de Statistique, Société Française de Statistique et Société Mathématique de France, 2004, 145 (2), pp.19-32. ⟨inserm-00262012⟩
  • Hélène Jacqmin-Gadda, Rodolphe Thiébaut, Jean-François Dartigues. [Joint modeling of quantitative longitudinal data and censored survival time]. Epidemiology and Public Health / Revue d'Epidémiologie et de Santé Publique, Elsevier Masson, 2004, 52 (6), pp.502-10. ⟨inserm-00262018⟩
  • Rodolphe Thiébaut, Hélène Jacqmin-Gadda. Mixed models for longitudinal left-censored repeated measures.. Computer Methods and Programs in Biomedicine, Elsevier, 2004, 74 (3), pp.255-60. ⟨10.1016/j.cmpb.2003.08.004⟩. ⟨hal-00143962⟩
  • Rodolphe Thiébaut, Hélène Jacqmin-Gadda. Modélisation longitudinale de données incomplètes : exemple de la charge virale plasmatique du VIH. Journal de la Société Française de Statistique, Société Française de Statistique et Société Mathématique de France, 2004, 145 (2), pp.33-47. ⟨inserm-00149860⟩
  • Rodolphe Thiébaut, Hélène Jacqmin-Gadda, Geneviève Chêne, Catherine Leport, Daniel Commenges. Bivariate linear mixed models using SAS proc MIXED.. Computer Methods and Programs in Biomedicine, Elsevier, 2002, 69 (3), pp.249-56. ⟨hal-00143963⟩
  • Abdel Babiker, Janet Darbyshire, Patrizio Pezzotti, Kholoud Porter, Giovanni Rezza, et al.. Changes over calendar time in the risk of specific first AIDS-defining events following HIV seroconversion, adjusting for competing risks.. International Journal of Epidemiology, Oxford University Press (OUP), 2002, 31 (5), pp.951-8. ⟨inserm-00263560⟩
  • Denis Malvy, Rodolphe Thiébaut, Catherine Marimoutou, François Dabis, Groupe d'Épidémiologie Clinique Du Sida En Aquitaine. Weight loss and body mass index as predictors of HIV disease progression to AIDS in adults. Aquitaine cohort, France, 1985-1997.. Journal of the American College of Nutrition, Taylor & Francis (Routledge): STM, Behavioural Science and Public Health Titles, 2001, 20 (6), pp.609-15. ⟨inserm-00263470⟩

Conference papers13 documents

  • Marie Alexandre, Mélanie Prague, Yves Lévy, Thiebaut Rodolphe. Comparison of AUC in clinical trials with follow up censoring: Application to HIV therapeutic vaccines. ISCB 2020 - 41th Annual Conference of the International Society for Clinical Biostatistics, Aug 2020, Krakow / Virtual, Poland. ⟨hal-03151377⟩
  • Hadrien Lorenzo, Razzaq Misbah, Jacob Odeber, Pierre-Emmanuel Morange, Jérôme Saracco, et al.. High-Dimensional Multi-Block Analysis of Factors Associated with Thrombin Generation Potential. CBMS 2019 - 32nd IEEE International Symposium on Computer-Based Medical Systems (CBMS), Jun 2019, Cordoba, Spain. pp.453-458, ⟨10.1109/CBMS.2019.00094⟩. ⟨hal-02429302⟩
  • Hadrien Lorenzo, Rodolphe Thiébaut, Jérôme Saracco. Multi-block high-dimensional lasso-penalized analysis with imputation of missing data applied to postgenomic data in an Ebola vaccine trial. Annual workshop on Statistical Methods for Post Genomic Data - SMPGD 2018, Jan 2018, Montpellier, France. ⟨hal-01664610⟩
  • Chloé Pasin, Laura Villain, François Dufour, Daniel Commenges, Mélanie Prague, et al.. Use of mathematical modeling for optimizing and adapting immunotherapy protocols in HIV-infected patients. Population Approach Group Europe, May 2018, Montreux, Switzerland. ⟨hal-01934340⟩
  • Laura Villain, Daniel Commenges, Mélanie Prague, Chloé Pasin, Rodolphe Thiébaut. Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts. International Biometric Conference, Jul 2018, Bacelone, Spain. ⟨hal-01973877⟩
  • Hadrien Lorenzo, Jérôme Saracco, Rodolphe Thiébaut. Une PLS multivoie parcimonieuse avec observations manquantes pour données hétérogènes. Journées de Statistique 2018 - Société Française de Statistique, May 2018, EDF Lab Paris Saclay, France. ⟨hal-01963431⟩
  • Perrine Soret, Marta Avalos, Soon Cheng, Rodolphe Thiebaut. High-dimensional compositional microbiota data: state-of-the-art of methods and software implementations. 2017 - GDR « Statistiques et santé », Oct 2017, Bordeaux, France. ⟨hal-01667295⟩
  • Mélanie Prague, Rodolphe Thiébaut, Philippe Moireau, Annabelle Collin. Joint-state and parameters estimation using nudging and SEIK filters for HIV mechanistic models. Journée de la statistique francaise, Jun 2017, Avignon, France. ⟨hal-01579068⟩
  • Perrine Soret, Cristian Meza, Marta Avalos, Karine Bertin, Rodolphe Thiébaut. Lasso-type estimators for non-parametric mixed-effects models: application to high-dimensional data from a vaccine clinical trial for HIV. 3rd conference of the International Society for Non-Parametric Statistics (ISNPS), Jun 2016, Avignon, France. ⟨hal-01396378⟩
  • Anita Burgun, Dina V Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, et al.. Linking health and administrative data for maternal, child and young adult health. 9. European Public Health Conference, Nov 2016, Vienne, Austria. ⟨10.1093/eurpub/ckw168.038⟩. ⟨hal-01861720⟩
  • Perrine Soret, Marta Avalos, Linda Wittkop, Rodolphe Thiébaut, Daniel Commenges. Lasso pour données censurées à gauche : une comparaison par simulation d’algorithmes proposés dans la littérature. 47èmes Journées de la Statistique, SFdS, 2015, Lille, France. ⟨hal-01578293⟩
  • Nastasia Fouret, Marta Avalos, Linda Wittkop, Rodolphe Thiebaut, Daniel Commenges. Prise en compte de la censure à gauche dans la modélisation de données de grande dimension. 46e Journées de Statistique, Jun 2014, Rennes, France. ⟨hal-01099341⟩
  • Julia Drylewicz, Daniel Commenges, Rodolphe Thiébaut. Test du score pour l'exploration de modèles complexes: Application à la modélisation dynamique du VIH.. 41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France. ⟨inria-00386586⟩

Poster communications3 documents

  • Perrine Soret, Marta Avalos, Laurence Delhaes, Rodolphe Thiébaut. A simulation framework of high-dimensional phylogenetic microbiota data. 29th International Biometric Conference, Jul 2018, Barcelone, Spain. ⟨hal-01856324⟩
  • Mélanie Prague, Daniel Commenges, Rodolphe Thiébaut. In Silico Evaluation of HIV Short-cycle Therapies with Dynamical Models. Keystone Symposium, Aug 2017, Este Park, United States. ⟨hal-01579070⟩
  • Perrine Soret, Marta Avalos, Rodolphe Thiébaut. High-dimensional longitudinal genomic data: a survey and evaluation of publicly available implementations of machine learning methods. Statistical Analysis of Massive Genomic Data, Nov 2015, Evry, France. 2015. ⟨hal-01253151⟩

Preprints, Working Papers, ...7 documents

  • Marie Alexandre, Mélanie Prague, Rodolphe Thiébaut. Between group comparison of AUC in clinical trials with censored follow-up: Application to HIV therapeutic vaccines. 2021. ⟨hal-03241637⟩
  • Laura Temime, Marie-Paule Gustin, Audrey Duval, Niccolo Buetti, Pascal Crepey, et al.. Estimating R0 of SARS-COV-2 in healthcare settings. 2020. ⟨hal-02625428⟩
  • Mélanie Prague, Linda Wittkop, Quentin Clairon, Dan Dutartre, Rodolphe Thiébaut, et al.. Population modeling of early COVID-19 epidemic dynamics in French regions and estimation of the lockdown impact on infection rate. 2020. ⟨hal-02555100⟩
  • Cédric Colas, Boris P. Hejblum, Sébastien Rouillon, Rodolphe Thiébaut, Pierre-Yves Oudeyer, et al.. EpidemiOptim: a Toolbox for the Optimization of Control Policies in Epidemiological Models. 2020. ⟨hal-03099898⟩
  • Louis Capitaine, Jérémie Bigot, Rodolphe Thiébaut, Robin Genuer. Fréchet random forests for metric space valued regression with non Euclidean predictors. 2020. ⟨hal-03066146⟩
  • Louis Capitaine, Robin Genuer, Rodolphe Thiébaut. Random forests for high-dimensional longitudinal data. 2019. ⟨hal-02002979⟩
  • Claude-Michel Brauner, Danaelle Jolly, Luca Lorenzi, Rodolphe Thiébaut. HETEROGENEOUS VIRAL ENVIRONMENT IN A HIV SPATIAL MODEL. 2009. ⟨hal-00383320⟩

Theses1 document

  • Rodolphe Thiébaut. Modélisation longitudinales de marqueur du VIH. Sciences du Vivant [q-bio]. Université Victor Segalen - Bordeaux II, 2002. Français. ⟨tel-00121899⟩