Rita Rebollo

Documents

Publications

	Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp. Mariana Galvão Ferrarini , Agnès Vallier , Carole Vincent-Monégat , Elisa Dell’aglio , Benjamin Gillet Microbiome, 2023, 11 (1), pp.274. ⟨10.1186/s40168-023-01714-8⟩ Article dans une revue hal-04345509v1
	ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements Daniel Oliveira , Marie Fablet , Anaïs Larue , Agnès Vallier , Claudia Carareto Nucleic Acids Research, inPress, 51 (18), pp.9764-9784. ⟨10.1093/nar/gkad671⟩ Article dans une revue hal-04195961v1
	Weevil Carbohydrate Intake Triggers Endosymbiont Proliferation: A Trade-Off between Host Benefit and Endosymbiont Burden Elisa Dell’aglio , Virginie Lacotte , Sergio Peignier , Isabelle Rahioui , Fadéla Benzaoui mBio, 2023, ⟨10.1128/mbio.03333-22⟩ Article dans une revue hal-04045309v1
	Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model Agnès Vallier , Elisa Dell’aglio , Mariana Galvão Ferrarini , Ophélie Hurtado , Carole Vincent-Monégat Frontiers in Ecology and Evolution, 2023, 11, pp.1152183. ⟨10.3389/fevo.2023.1152183⟩ Article dans une revue hal-04154026v1
	Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity Mariana Galvão Ferrarini , Agnès Vallier , Elisa Dell’aglio , Séverine Balmand , Carole Vincent-Monégat Frontiers in Physiology, 2023, 14, pp.1142513. ⟨10.3389/fphys.2023.1142513⟩ Article dans une revue hal-04045330v1
	A comparative study revealed hyperspectral imaging as a potential standardized tool for the analysis of cuticle tanning over insect development Virginie Lacotte , Elisa Dell’aglio , Sergio Peignier , Fadéla Benzaoui , Abdelaziz Heddi Heliyon, 2023, 9 (3), pp.e13962. ⟨10.1016/j.heliyon.2023.e13962⟩ Article dans une revue hal-04045314v1
	A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific Marie Fablet , Judit Salces-Ortiz , Angelo Jacquet , Bianca Menezes , Corentin Dechaud Genome Biology and Evolution, 2023, 15 (9), pp.evad160. ⟨10.1093/gbe/evad160⟩ Article dans une revue hal-04195964v1
	Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩ Article dans une revue hal-03839252v1
	The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Article dans une revue hal-03627264v1
	Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis Mariana G Ferrarini , Avantika Lal , Rita Rebollo , Andreas J Gruber , Andrea Guarracino Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02095-0⟩ Article dans une revue hal-03237937v1
	Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration Thomas Clapes , Aikaterini Polyzou , Pia Prater , A Sagar , Antonio Morales-Hernández Nature Cell Biology, 2021, 23 (7), ⟨10.1038/s41556-021-00707-9⟩ Article dans une revue hal-03285370v1
	Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice Rita Rebollo , Mariana Galvao Ferrarini , Liane Gagnier , Ying Zhang , Ardian Ferraj Viruses, 2020, 12 (7), pp.783. ⟨10.3390/v12070783⟩ Article dans une revue hal-02919047v1
	Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains Marie Fablet , Angelo Jacquet , Rita Rebollo , Annabelle A. Haudry , Carine Rey G3, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩ Article dans une revue hal-02004384v1
	On the role of H3.3 in retroviral silencing Gernot Wolf , Rita Rebollo , Mohammad M. Karimi , Adam D. Ewing , Rui Kamada Nature, 2017, 548 (7665), pp.E1-E6. ⟨10.1038/nature23277⟩ Article dans une revue hal-01594928v1
	Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma Frances E. Lock , Rita Rebollo , Katharine Miceli-Royer , Liane Gagnier , Sabrina Kuah Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (34), pp.E3534-E3543. ⟨10.1073/pnas.1405507111⟩ Article dans une revue hal-02631106v1
	Epigenetic interplay between mouse endogenous retroviruses and host genes Rita Rebollo , Katharine Miceli-Royer , Ying Zhang , Sharareh Farivar , Liane Gagnier Genome Biology, 2012, 13 (10), pp.1-15. ⟨10.1186/gb-2012-13-10-r89⟩ Article dans une revue hal-02649122v1
	Transposable elements: not as quiet as a mouse Rita Rebollo , Ying Zhang , Dixie L. Mager Genome Biology, 2012, 13 (6), ⟨10.1186/gb-2012-13-6-159⟩ Article dans une revue hal-02652763v1
	C-GATE - catalogue of genes affected by transposable elements Rita Rebollo , Sharareh Farivar , Dixie L. Mager Mobile DNA, 2012, 3 (1), pp.1-5. ⟨10.1186/1759-8753-3-9⟩ Article dans une revue hal-02645414v1
	tirant, a newly discovered active endogenous retrovirus in Drosophila simulans. Abdou Akkouche , Rita Rebollo , Nelly Burlet , Caroline Esnault , Sonia Martinez Journal of Virology, 2012, 86 (7), pp.3675-3681. ⟨10.1128/JVI.07146-11⟩ Article dans une revue hal-00763499v1
	A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans. Cristina Vieira , Marie Fablet , Emmanuelle Lerat , Matthieu Boulesteix , Rita Rebollo Journal of Environmental Radioactivity, 2012, 113, pp.83-86. ⟨10.1016/j.jenvrad.2012.04.001⟩ Article dans une revue hal-00763500v1
	A snapshot of histone modifications within transposable elements in Drosophila wild type strains. Rita Rebollo , Béatrice Horard , Flora Begeot , Marion Delattre , Eric Gilson PLoS ONE, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩ Article dans une revue hal-00850321v1
	Transposable elements: an abundant and natural source of regulatory sequences for host genes Rita Rebollo , Mark T. Romanish , Dixie L. Mager Annual Review of Genetics, 2012, 46, pp.21-42. ⟨10.1146/annurev-genet-110711-155621⟩ Article dans une revue hal-02652491v1
	Placenta-specific expression of the interleukin-2 (IL-2) receptor beta subunit from an endogenous retroviral promoter Carla J. Cohen , Rita Rebollo , Sonja Babovic , Elizabeth L. Dai , Wendy P. Robinson Journal of Biological Chemistry, 2011, 286 (41), pp.35543-35552. ⟨10.1074/jbc.M111.227637⟩ Article dans une revue hal-02649119v1
	Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms Rita Rebollo , Mohammad M. Karimi , Misha Bilenky , Liane Gagnier , Katharine Miceli-Royer PLoS Genetics, 2011, 7 (9), pp.1-14. ⟨10.1371/journal.pgen.1002301⟩ Article dans une revue hal-02651240v1
	Jumping genes and epigenetics: Towards new species. Rita Rebollo , Béatrice Horard , Benjamin Hubert , Cristina Vieira Gene, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩ Article dans une revue hal-00850384v1
	Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. Marie Fablet , Emmanuelle Lerat , Rita Rebollo , Béatrice Horard , Nelly Burlet FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩ Article dans une revue hal-00850396v1
	Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila M. Fablet , E. Lerat , R. Rebollo , B. Horard , N. Burlet FASEB Journal, 2009, 23, pp.54-62 Article dans une revue hal-00428323v1
	Losing helena: The extinction of a drosophila line-like element Rita Rebollo , Emmanuelle Lerat , Liliana Lopez Kleine , Christian Biémont , Cristina Vieira BMC Genomics, 2008, 9, pp.1-11. ⟨10.1186/1471-2164-9-149⟩ Article dans une revue hal-02668006v1
	The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes Marie Fablet , Rita Rebollo , Christian Biémont , Cristina Vieira Gene, 2007, 390 (1-2), pp.84-91. ⟨10.1016/j.gene.2006.08.005⟩ Article dans une revue hal-02665818v1

	High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier ISS 2022 - 10th Congress of the International Symbiosis Society, Jul 2022, Lyon, France Poster de conférence hal-03810657v1
	Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand VI Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma de Mallorca, Spain Poster de conférence hal-03514015v1
	The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Poster de conférence hal-03506786v1

	Methylated DNA immunoprecipitation analysis of mammalian endogenous retroviruses Rita Rebollo , Dixie L. Mager Transposons and Retrotransposons : Methods and protocols, 1400, Humana Press, 2016, Methods in Molecular Biology, 978-1-4939-3370-9 978-1-4939-3372-3. ⟨10.1007/978-1-4939-3372-3_23⟩ Chapitre d'ouvrage hal-02794282v1

	Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues Rita Rebollo , Eric Cumunel , Arnaud Mary , François Sabot , Nelly Burlet 2023 Pré-publication, Document de travail hal-04285238v1
	Global analysis of human SARS-CoV-2 infection and host-virus interaction Mariana Ferrarini , Vanessa Aguiar-Pulido , Eric Dawson , Andrea Guarracino , Andreas Gruber 2022 Pré-publication, Document de travail hal-03514119v1
	The genome of the cereal pest Sitophilus oryzae : a transposable element haven Nicolas Parisot , Carlos Vargas-Chavez , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand 2021 Pré-publication, Document de travail hal-03320933v1

	TE variation in natural populations of Drosophila : copy number, transcription and chromatin state Rita Rebollo Agricultural sciences. Université Claude Bernard - Lyon I, 2009. English. ⟨NNT : 2009LYO10186⟩ Thèse tel-00580831v1

Rita Rebollo

Publications

Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements

Weevil Carbohydrate Intake Triggers Endosymbiont Proliferation: A Trade-Off between Host Benefit and Endosymbiont Burden

Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model

Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity

A comparative study revealed hyperspectral imaging as a potential standardized tool for the analysis of cuticle tanning over insect development

A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration

Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

On the role of H3.3 in retroviral silencing

Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma

Epigenetic interplay between mouse endogenous retroviruses and host genes

Transposable elements: not as quiet as a mouse

C-GATE - catalogue of genes affected by transposable elements

tirant, a newly discovered active endogenous retrovirus in Drosophila simulans.

A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.

A snapshot of histone modifications within transposable elements in Drosophila wild type strains.

Transposable elements: an abundant and natural source of regulatory sequences for host genes

Placenta-specific expression of the interleukin-2 (IL-2) receptor beta subunit from an endogenous retroviral promoter

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

Jumping genes and epigenetics: Towards new species.

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila

Losing helena: The extinction of a drosophila line-like element

The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Methylated DNA immunoprecipitation analysis of mammalian endogenous retroviruses

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Global analysis of human SARS-CoV-2 infection and host-virus interaction

The genome of the cereal pest Sitophilus oryzae : a transposable element haven

TE variation in natural populations of Drosophila : copy number, transcription and chromatin state