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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis

 David Vallenet , Alexandra Calteau , Mathieu Dubois , Mylène Beuvin , Laura Burlot , et al.
JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence hal-04358357v1

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis

 David Vallenet , Alexandra Calteau , Mathieu Dubois , Mylène Beuvin , Laura Burlot , et al.
The 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom
Communication dans un congrès hal-04358401v1

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis

 David Vallenet , Alexandra Calteau , Mathieu Dubois , Aurélie Lajus , David Roche , et al.
International symposium on environmental and agronomical genomics, Nov 2018, Paris, France
Poster de conférence hal-04357657v1
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On-target activity predictions enable improved CRISPR-dCas9 screens in bacteria

 Alicia Calvo-Villamañán , Jérôme Wong Ng , Rémi Planel , Hervé Ménager , Arthur Chen , et al.
Nucleic Acids Research, 2020, gkaa294, ⟨10.1093/nar/gkaa294⟩
Article dans une revue pasteur-02773823v1
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis

 Claudine Médigue , Alexandra Calteau , Stéphane Cruveiller , Mathieu Gachet , Guillaume Gautreau , et al.
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Poster de conférence hal-04356218v1
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Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

 Florent Lassalle , Rémi Planel , Simon Penel , David Chapulliot , Valérie Barbe , et al.
Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩
Article dans une revue hal-01913841v1

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

 Guillaume Gautreau , Christophe Ambroise , Catherine Matias , Amandine Perrin , Rémi Planel , et al.
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès hal-04355945v1

Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

 Hemalatha Golaconda Ramulu , Mathieu Groussin , Emmanuel Talla , Rémi Planel , Vincent Daubin , et al.
Molecular Phylogenetics and Evolution, 2014, 75, pp.103 - 117. ⟨10.1016/j.ympev.2014.02.013⟩
Article dans une revue hal-01913940v1

PanGBank: depicting microbial species diversity via PPanGGOLiN

 Guillaume Gautreau , Adelme Bazin , Rémi Planel , Mathieu Gachet , Mathieu Dubois , et al.
JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence hal-04358380v1

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

 Guillaume Gautreau , Christophe Ambroise , Catherine Matias , Amandine Perrin , Rémi Planel , et al.
Genome Informatics 2018, Sep 2018, Hinxton, Cambridge, United Kingdom
Communication dans un congrès hal-04356757v1
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

 Guillaume Gautreau , Adelme Bazin , Mathieu Gachet , Rémi Planel , Laura Burlot , et al.
PLoS Computational Biology, 2020, ⟨10.1371/journal.pcbi.1007732⟩
Article dans une revue hal-03089210v1

Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe-S carrier.

 Béatrice Py , Catherine Gerez , Sandra Angelini , Rémy Planel , Daniel Vinella , et al.
Molecular Microbiology, 2012, 86 (1), pp.155-71. ⟨10.1111/j.1365-2958.2012.08181.x⟩
Article dans une revue istex hal-01054360v1
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RecPhyloXML: a format for reconciled gene trees

 Wandrille Duchemin , Guillaume Gence , Anne-Muriel Arigon Chifolleau , Lars Arvestad , Mukul Bansal , et al.
Bioinformatics, 2018, 34 (21), pp.3646-3652. ⟨10.1093/bioinformatics/bty389⟩
Article dans une revue lirmm-01800296v1

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

 Clémentine François , L. Duret , Laurent Simon , Florian Mermillod-Blondin , Florian Malard , et al.
Molecular Biology and Evolution, 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩
Article dans une revue hal-01370129v1
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis

 David Vallenet , Alexandra Calteau , Mathieu Dubois , Paul Amours , Adelme Bazin , et al.
Nucleic Acids Research, 2019, 48 (D1), pp.D579-D589. ⟨10.1093/nar/gkz926⟩
Article dans une revue hal-02403170v1
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MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data

 Claudine Médigue , Alexandra Calteau , Stéphane Cruveiller , Mathieu Gachet , Guillaume Gautreau , et al.
Briefings in Bioinformatics, 2019, 20 (4), pp.1071-1084. ⟨10.1093/bib/bbx113⟩
Article dans une revue hal-02626039v1
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