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Journal articles50 documents

  • S Descamps, B Merkel, H Strøm, Rémi Choquet, H Steen, et al.. Sharing wintering grounds does not synchronize annual survival in a high Arctic seabird, the little auk. Marine Ecology Progress Series, Inter Research, 2021, SEA, ⟨10.3354/meps13400⟩. ⟨hal-03017418⟩
  • Amalia Rataud, Marlène Dupraz, Céline Toty, Thomas Blanchon, Marion Vittecoq, et al.. Evaluating Functional Dispersal in a Nest Ectoparasite and Its Eco-Epidemiological Implications. Frontiers in Veterinary Science, Frontiers Media, 2020, 7, ⟨10.3389/fvets.2020.570157⟩. ⟨hal-03388412⟩
  • Meritxell Genovart, Olivier O. Gimenez, Albert Bertolero, Rémi Choquet, Daniel Oro, et al.. Decrease in social cohesion in a colonial seabird under a perturbation regime. Scientific Reports, Nature Publishing Group, 2020, 10 (18720), ⟨10.1038/s41598-020-75259-3⟩. ⟨hal-03020416⟩
  • Rune S. Tjørnløv, Roger Pradel, Remi Choquet, Thomas Kjaer Christensen, Morten Frederiksen. Consequences of past and present harvest management in a declining flyway population of common eiders Somateria mollissima. Ecology and Evolution, Wiley Open Access, 2019, 9 (22), pp.12515-12530. ⟨10.1002/ece3.5707⟩. ⟨hal-02281252v2⟩
  • Matthieu Berges, Rémi Choquet, Francesco Bonadonna. Impact of long-term behavioural studies in the wild: the blue petrel, Halobaena caerulea, case at Kerguelen. Animal Behaviour, Elsevier Masson, 2019, 151, pp.53-65. ⟨10.1016/j.anbehav.2019.03.004⟩. ⟨hal-02285159⟩
  • Amalia Rataud, Marlène Dupraz, Céline Toty, Thomas Blanchon, Marion Vittecoq, et al.. Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite. Peer Community in Ecology, Peer Community In, 2019, Zenodo 2573076 (ver3), ⟨10.5281/zenodo.2573075⟩. ⟨hal-02859934⟩
  • Françoise Amélineau, David Grémillet, Ann Harding, Wojciech Walkusz, Rémi Choquet, et al.. Arctic climate change and pollution impact little auk foraging and fitness across a decade. Scientific Reports, Nature Publishing Group, 2019, 9, ⟨10.1038/s41598-018-38042-z⟩. ⟨hal-01977919⟩
  • Dimas Gianuca, Stephen C Votier, Deborah Pardo, Andrew G Wood, Richard B Sherley, et al.. Sex‐specific effects of fisheries and climate on the demography of sexually dimorphic seabirds. Journal of Animal Ecology, Wiley, 2019, 88 (9), pp.1366-1378. ⟨10.1111/1365-2656.13009⟩. ⟨hal-02161559⟩
  • Julie Louvrier, Christophe Duchamp, Valentin Lauret, Eric Marboutin, Sarah Cubaynes, et al.. Mapping and explaining wolf recolonization in France using dynamic occupancy models and opportunistic data. Ecography, Wiley, 2018, 41 (4), pp.647-660. ⟨10.1111/ecog.02874⟩. ⟨hal-01997206⟩
  • Aurore Ponchon, Rémi Choquet, Jérémy Tornos, Karen Mccoy, Torkild Tveraa, et al.. Survival estimates strongly depend on capture-recapture designs in a disturbed environment inducing dispersal. Ecography, Wiley, 2018, 41 (12), pp.2055-2066. ⟨10.1111/ecog.03334⟩. ⟨hal-02265944⟩
  • Mathieu Pluntz, Sebastian Lecoz, Nathalie Dubois Peyrard Peyrard, Roger Pradel, Pierre-Olivier Cheptou, et al.. Data used for estimating colonisation, dormancy and germination of 38 weed species. Related to the paper "A general method for estimating seed dormancy and colonisation in annual plants from the observation of existing flora" by Matthieu Pluntz, Sebastian Le Coz, Nathalie Peyrard, Roger Pradel, Rémi Choquet, Pierre-Olivier Cheptou. Ecology Letters, Wiley, In press. ⟨hal-01801122⟩
  • Olivier Gimenez, Jean-Dominique Lebreton, Rémi Choquet, Roger Pradel. R2ucare: An R package to perform goodness-of-fit tests for capture-recapture models. Methods in Ecology and Evolution, Wiley, 2018, 9 (7), pp.1749-1754. ⟨10.1111/2041-210X.13014⟩. ⟨hal-02329897⟩
  • Maya L. Groner, John M. Hoenig, Roger Pradel, Rémi Choquet, Wolfgang K. Vogelbein, et al.. Dermal mycobacteriosis and warming sea surface temperatures are associated with elevated mortality of striped bass in Chesapeake Bay. Ecology and Evolution, Wiley Open Access, 2018, 8 (18), pp.9384-9397. ⟨10.1002/ece3.4462⟩. ⟨hal-01911547⟩
  • Matthieu Pluntz, Sebastian Le Coz, Nathalie Peyrard, Roger Pradel, Rémi Choquet, et al.. A general method for estimating seed dormancy and colonisation in annual plants from the observation of existing flora. Ecology Letters, Wiley, 2018, 21 (9), pp.1311-1318. ⟨10.1111/ele.13097⟩. ⟨hal-01911555⟩
  • Federico Manna, Roger Pradel, Rémi Choquet, Hélène Fréville, Pierre-Olivier Cheptou. Disentangling the role of seed bank and dispersal in plant metapopulation dynamics using patch occupancy surveys. Ecology, Ecological Society of America, 2017, 98 (10), pp.2662-2672. ⟨10.1002/ecy.1960⟩. ⟨hal-02924171⟩
  • John M. Hoenig, Maya L. Groner, Matthew W. Smith, Wolfgang K. Vogelbein, David M. Taylor, et al.. Impact of disease on the survival of three commercially fished species. Ecological Applications, Ecological Society of America, 2017, 27 (7), pp.2116-2127. ⟨10.1002/eap.1595⟩. ⟨hal-01911558⟩
  • Rémi Choquet, Alexandre Garnier, Edem Awuve, Aurélien Besnard. Transient state estimation using continuous-time processes applied to opportunistic capture-recapture data. Ecological Modelling, Elsevier, 2017, 361, pp.157-163. ⟨10.1016/j.ecolmodel.2017.08.001⟩. ⟨hal-02625449⟩
  • S. Guérin, D. Picard, Rémi Choquet, Aurélien Besnard. Advances in methods for estimating stopover duration for migratory species using capture-recapture data. Ecological Applications, Ecological Society of America, 2017, 27 (5), pp.1594-1604. ⟨10.1002/eap.1551⟩. ⟨hal-01601427⟩
  • Guillaume Peron, Jean-Michel Gaillard, Christophe Barbraud, Christophe Bonenfant, A. Charmantier, et al.. Evidence of reduced individual heterogeneity in adult survival of long-lived species. Evolution - International Journal of Organic Evolution, Wiley, 2016, 70 (12), pp.2909-2914. ⟨10.1111/evo.13098⟩. ⟨hal-01510958⟩
  • Morten Frederiksen, Jean-Dominique Lebreton, Roger Pradel, Rémi Choquet, Olivier Gimenez. Identifying links between vital rates and environment: a toolbox for the applied ecologist. Journal of Applied Ecology, Wiley, 2014, 51 (1), pp.71-81. ⟨10.1111/1365-2664.12172⟩. ⟨hal-01911588⟩
  • Olivier Gimenez, Laetitia Blanc, Aurélien Besnard, Roger Pradel, Paul F. Doherty, et al.. Fitting occupancy models with E-SURGE: Hidden Markov modelling of presence-absence data. Methods in Ecology and Evolution, Wiley, 2014, 5 (6), pp.592-597. ⟨10.1111/2041-210X.12191⟩. ⟨hal-01911593⟩
  • Diana J. Cole, Byron J. T. Morgan, Rachel S. Mccrea, Roger Pradel, Olivier Gimenez, et al.. Does your species have memory? Analyzing capture-recapture data with memory models. Ecology and Evolution, Wiley Open Access, 2014, 4 (11), pp.2124-2133. ⟨10.1002/ece3.1037⟩. ⟨hal-01911589⟩
  • David N Koons, Marlène Gamelon, Jean-Michel Gaillard, Lise M Aubry, Robert F Rockwell, et al.. Methods for studying cause-specific senescence in the wild. Methods in Ecology and Evolution, Wiley, 2014, 5 (9), pp.924 - 933. ⟨10.1111/2041-210x.12239⟩. ⟨hal-03282076⟩
  • Rémi Choquet, Arnaud Béchet, Yann Guédon. Applications of hidden hybrid Markov/semi-Markov models: from stopover duration to breeding success dynamics. Ecology and Evolution, Wiley Open Access, 2014, 4 (6), pp.817 - 826. ⟨10.1002/ece3.962⟩. ⟨hal-01084498⟩
  • Olivier Gimenez, Stephen T. Buckland, Byron J.T. Morgan, Nicolas Bez, Sophie Bertrand, et al.. Statistical ecology comes of age. Biology Letters, Royal Society, The, 2014, 10 (20140698), ⟨10.1098/rsbl.2014.0698⟩. ⟨hal-01123399⟩
  • A. Culina, S. Lachish, Roger Pradel, Rémi Choquet, B.C. Sheldon. A multievent approach to estimating pair fidelity and heterogeneity in state transitions. Ecology and Evolution, Wiley Open Access, 2013, 3 (13), pp.4326-4338. ⟨10.1002/ece3.729⟩. ⟨hal-01911595⟩
  • Rémi Choquet, Yann Guédon, Aurélien Besnard, Matthieu Guillemain, Roger Pradel. Estimating stop over duration in the presence of trap-effects. Ecological Modelling, Elsevier, 2013, 250, pp.111-118. ⟨10.1016/j.ecolmodel.2012.11.002⟩. ⟨hal-00828839⟩
  • Hélène Fréville, Rémi Choquet, Roger Pradel, P.-O. Cheptou. Inferring seed bank from hidden Markov models: new insights into metapopulation dynamics in plants. Journal of Ecology, Wiley, 2013, 101 (6), pp.1572-1580. ⟨10.1111/1365-2745.12141⟩. ⟨hal-01911603⟩
  • Rémi Choquet, Ana Sanz-Aguilar, Blandine Doligez, Erika Nogué, Roger Pradel, et al.. Estimating demographic parameters from capture-recapture data with dependence among individuals within clusters. Methods in Ecology and Evolution, Wiley, 2013, 4 (5), pp.474-482. ⟨10.1111/2041-210X.12030⟩. ⟨hal-01911601⟩
  • Cédric Juillet, Rémi Choquet, Gilles Gauthier, Josée Lefebvre, Roger Pradel, et al.. Carry-over effects of spring hunt and climate on recruitment to the natal colony in a migratory species. Journal of Applied Ecology, Wiley, 2012, 49 (6), pp.1237-1246. ⟨10.1111/j.1365-2664.2012.02199.x⟩. ⟨hal-02126297⟩
  • Olivier Duriez, Bruno Ens, Rémi Choquet, Roger Pradel, Marcel Klaassen. Comparing the seasonal survival of resident and migratory oystercatchers: carry-over effects of habitat quality and weather conditions. Oikos, Nordic Ecological Society, 2012, 121 (6), pp.862-873. ⟨10.1111/j.1600-0706.2012.20326.x⟩. ⟨hal-02126293⟩
  • Guillaume Peron, Yves Ferrand, Rémi Choquet, Roger Pradel, François Gossmann, et al.. Spatial heterogeneity in mortality and its impact on the population dynamics of Eurasian woodcocks. Population Ecology, Springer Verlag, 2012, 54 (2), pp.305-312. ⟨10.1007/s10144-012-0309-6⟩. ⟨hal-02126301⟩
  • Roger Pradel, Rémi Choquet, A. Bechet. Breeding Experience Might Be a Major Determinant of Breeding Probability in Long-Lived Species: The Case of the Greater Flamingo. PLoS ONE, Public Library of Science, 2012, 7 (12), pp.e51016. ⟨10.1371/journal.pone.0051016⟩. ⟨hal-00655507v2⟩
  • Lucile Marescot, Roger Pradel, Christophe Duchamp, Sarah Cubaynes, Eric Marboutin, et al.. Capture-recapture population growth rate as a robust tool against detection heterogeneity for population management. Ecological Applications, Ecological Society of America, 2011, 21, pp.2898 - 2907. ⟨10.1890/10-2321.1⟩. ⟨hal-02126314⟩
  • Sarah Cubaynes, Roger Pradel, Rémi Choquet, Christophe Duchamp, Jean-Michel Gaillard, et al.. Importance of Accounting for Detection Heterogeneity When Estimating Abundance: the Case of French Wolves. Conservation Biology, Wiley, 2010, 24 (2), pp.621-626. ⟨10.1111/j.1523-1739.2009.01431.x⟩. ⟨hal-00539464⟩
  • Roger Pradel, Rémi Choquet, Mauricio A Lima, Joseph Merritt, Laurent Crespin. Estimating Population Growth Rate From Capture–Recapture Data in Presence of Capture Heterogeneity. Journal of Agricultural, Biological, and Environmental Statistics, Springer Verlag, 2010, 15 (2), pp.248-258. ⟨10.1007/s13253-009-0008-8⟩. ⟨hal-02126326⟩
  • Özge Balkiz, Arnaud Béchet, Lauriane Rouan, Rémi Choquet, Christophe Germain, et al.. Experience-dependent natal philopatry of breeding greater flamingos. Journal of Animal Ecology, Wiley, 2010, 79 (5), pp.1045-1056. ⟨10.1111/j.1365-2656.2010.01721.x⟩. ⟨hal-02126322⟩
  • Guillaume G. Péron, Pierre-André Crochet, Rémi Choquet, Roger Pradel, Jean-Dominique Lebreton, et al.. Capture-recapture models with heterogeneity to study survival senescence in the wild. Oikos, Nordic Ecological Society, 2010, 119 (3), pp.524 - 532. ⟨10.1111/j.1600-1706.2009.17882.x⟩. ⟨hal-02126325⟩
  • Sabrina Servanty, Rémi Choquet, Eric Baubet, Serge Brandt, Jean-Michel Gaillard, et al.. Assessing whether mortality is additive using marked animals: a Bayesian state–space modeling approach. Ecology, Ecological Society of America, 2010, 91 (7), pp.1916-1923. ⟨10.1890/09-1931.1⟩. ⟨hal-02662609⟩
  • Rémi Choquet, Jean-Dominique Lebreton, Anne-Marie Reboulet, Roger Pradel, Olivier Gimenez. U-CARE: Utilities for performing goodness of fit tests and manipulating CApture-REcapture data. Ecography, Wiley, 2009, 32 (6), pp.1071-1074. ⟨10.1111/j.1600-0587.2009.05968.x⟩. ⟨hal-03515210⟩
  • Olivier Duriez, Stein A Saether, Bruno J Ens, Rémi Choquet, Roger Pradel, et al.. Estimating survival and movements using both live and dead recoveries: a case study of oystercatchers confronted with habitat change. Journal of Applied Ecology, Wiley, 2009, 46 (1), pp.144-153. ⟨10.1111/j.1365-2664.2008.01592.x⟩. ⟨hal-02126329⟩
  • Stéphanie Jenouvrier, Giacomo Tavecchia, Jean-Claude Thibault, Rémi Choquet, Vincent Bretagnolle. Recruitment processes in long-lived species with delayed maturity: estimating key demographic parameters. Oikos, Nordic Ecological Society, 2008, 117, pp.620-628. ⟨10.1111/j.2007.0030-1299.16394.x,⟩. ⟨hal-00323825⟩
  • Laurent Crespin, Rémi Choquet, Mauricio Lima, Merritt J., Roger Pradel. Is heterogeneity of catchability in capture-recapture studies a mere sampling artifact or a biologically relevant feature of the population?. Population Ecology, Springer Verlag, 2008, 50 (3), pp.247-256. ⟨10.1007/s10144-008-0090-8⟩. ⟨hal-02126334⟩
  • Roger Pradel, Lory Maurin-Bernier, Olivier Gimenez, Meritxell Genovart, Rémi Choquet, et al.. Estimation of sex-specific survival with uncertainty in sex assessment. Canadian Journal of Statistics, Wiley, 2008, 36 (1), pp.29-42. ⟨10.1002/cjs.5550360105⟩. ⟨hal-02126346⟩
  • Olivier Gimenez, Vivien Rossi, Rémi Choquet, Camille Dehais, Blaise Doris, et al.. STATE-SPACE MODELLING OF DATA ON MARKED INDIVIDUALS. Ecological Modelling, Elsevier, 2007, 206 (3-4), pp.431-438. ⟨10.1016/j.ecolmodel.2007.03.040⟩. ⟨hal-03515273⟩
  • Philippe Rivalan, Roger Pradel, Rémi Choquet, Marc Girondot, Anne-Caroline Prévot-Julliard. Estimating clutch frequency in the sea turtle Dermochelys coriacea using stopover duration. Marine Ecology Progress Series, Inter Research, 2006, 317, pp.285-295. ⟨10.3354/meps317285⟩. ⟨hal-02126355⟩
  • Laurent Dormont, Werner Baltensweiler, Rémi Choquet, Alain Roques. Larch- and pine-feeding host races of the larch bud moth (Zeiraphera diniana) have cyclic and synchronous population fluctuations. Oikos, Nordic Ecological Society, 2006, 115 (2), pp.299-307. ⟨10.1111/j.2006.0030-1299.15010.x⟩. ⟨hal-02659142⟩
  • Laurent Dormont, Laurent Baltensweiler, Rémi Choquet, Alain Roques. Larch- and pine-feeding host races of the larch bud moth ( Zeiraphera diniana) have cyclic and synchronous population fluctuations.. Oikos, Nordic Ecological Society, 2006, 115 (2), p.299-307. ⟨10.1111/j.2006.0030-1299.15010.x⟩. ⟨hal-03061372⟩
  • Philippe Rivalan, Anne-Caroline Prevot-Julliard, Rémi Choquet, Roger Pradel, Bertrand Jacquemin, et al.. Trade-off between current reproductive effort and delay to next reproduction in the leatherback sea turtle. Oecologia, Springer Verlag, 2005, 145 (4), pp.564-574. ⟨10.1007/s00442-005-0159-4⟩. ⟨hal-02126363⟩
  • Olivier Gimenez, Rémi Choquet, Laurent Lamor, Paul Scofield, David Fletcher, et al.. Efficient profile-likelihood confidence intervals for capture-recapture models. Journal of Agricultural, Biological, and Environmental Statistics, Springer Verlag, 2005, 10 (2), pp.184-196. ⟨10.1198/108571105X46462⟩. ⟨hal-02126356⟩

Book sections3 documents

  • Roger Pradel, Rémi Choquet, Arnaud Béchet. Le comportement explique la démographie. Arnaud, Nicolas and Jouve, Bertrand and Müller, Jean-Pierre. Systèmes complexes: de la biologie aux territoires, Agropolis International, pp.34, 2018. ⟨hal-01911551⟩
  • Lauriane Rouan, Sarah Cubaynes, Christophe Duchamp, Christian Miquel, Anne-Marie Reboulet, et al.. Modèles de mélange en capture-recapture. Droesbeke; Jean-Jacques and Saporta; Gilbert and Thomas-Agnan; Christine. Modèles à variables latentes et modèles de mélange, 13, Technip, pp.265-272, 2013, 9782710809593. ⟨hal-01911609⟩
  • Rémi Choquet, Lauriane Rouan, Roger Pradel. Program E-Surge: A Software Application for Fitting Multievent Models. Modeling Demographic Processes In Marked Populations, Springer, pp.845-865, 2009, ⟨10.1007/978-0-387-78151-8_39⟩. ⟨hal-02927999⟩

Preprints, Working Papers, ...1 document

  • Meritxell Genovart, Olivier O. Gimenez, Albert Bertolero, Rémi Choquet, Daniel Oro, et al.. Changes in social cohesion in a long-lived species under a perturbation regime. In press. ⟨hal-02162188⟩

Reports3 documents

  • Rémi Choquet. A Matrix-Free Preconditioner Applied to CFD. [Research Report] RR-2605, INRIA. 1995. ⟨inria-00074080⟩
  • Rémi Choquet. Accéleration de l'algorithme de Newton-GMRES pour les équations de Navier-Stokes. [Rapport de recherche] RR-2287, INRIA. 1994. ⟨inria-00074385⟩
  • Rémi Choquet, Jocelyne Erhel. Some convergence results for the Newton-GMRES algorithm. [Research Report] RR-2065, INRIA. 1993. ⟨inria-00074607⟩