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35

Curriculum vitæ FLORES


List of the publications I am involved in.


Journal articles13 documents

  • Cyril Pommier, Célia Michotey, Guillaume Cornut, Pierre Roumet, Eric Duchêne, et al.. Applying FAIR principles to plant phenotypic data management in GnpIS. Plant Phenomics, Science Partner Journals, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩. ⟨hal-02624031⟩
  • Michael Alaux, Jane Rogers, Thomas Letellier, Raphaël Flores, Françoise Alfama, et al.. Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biology, BioMed Central, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩. ⟨hal-02278879⟩
  • . International Wheat Genome Sequencing Consortium (iwgsc), Arnaud Bellec, Helene Berges, Sonia Vautrin, Michael Alaux, et al.. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, American Association for the Advancement of Science, 2018, 361 (6403), pp.7191. ⟨10.1126/science.aar7191⟩. ⟨hal-01885399⟩
  • Umar Quraishi, Caroline Pont, Qurat-Ul Ain, Raphaël Flores, Laura Burlot, et al.. Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.). Frontiers in Plant Science, Frontiers, 2017, 8, pp.1-12. ⟨10.3389/fpls.2017.01843⟩. ⟨hal-02285542⟩
  • Moaine El Baidouri, Florent Murat, Maeva Veyssière, Mélanie Molinier, Raphaël-Gauthier Flores, et al.. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). New Phytologist, Wiley, 2016, 213 (3), ⟨10.1111/nph.14113⟩. ⟨hal-01361976⟩
  • Manuel Spannagl, Michael Alaux, Matthias Lange, Dan M. Bolser, Kai Christian Bader, et al.. TransPLANT resources for triticeae genomic data. PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩. ⟨hal-02635899⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Haris Gavranovic, Raphael Flores, et al.. Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (3), pp.735-749. ⟨10.1093/gbe/evv014⟩. ⟨hal-01133906⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Raphaël Flores, Alix Armero, et al.. Shared Subgenome Dominance Following Polyploidization Explains Grass Genome Evolutionary Plasticity from a Seven Protochromosome Ancestor with 16K Protogenes. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2014, 6 (1), pp.12-33. ⟨10.1093/gbe/evt200⟩. ⟨hal-02099907⟩
  • Delphine Steinbach, Michael Alaux, Joelle Amselem, Nathalie Choisne, Sophie Durand, et al.. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database - The journal of Biological Databases and Curation, Oxford University Press, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩. ⟨hal-02648084⟩
  • Olivier Langella, Benoit Valot, Daniel Jacob, Thierry Balliau, Raphaël-Gauthier Flores, et al.. Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, Wiley-VCH Verlag, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩. ⟨hal-02651260⟩
  • Caroline Pont, Florent Murat, Sébastien Guizard, Raphaël-Gauthier Flores, Séverine Foucrier, et al.. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant Journal, Wiley, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩. ⟨hal-00964421⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Raphaël-Gauthier Flores, Alix Armero Villanueva, et al.. Shared sub-genome dominance following polyploidization explains grass genome evolutionary plasticity from a 7 protochromosome ancestor with 16K protogenes. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨10.1093/gbe/evt200⟩. ⟨hal-00964190⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Raphael Flores, Alix Armero, et al.. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes.. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨hal-01218128⟩

Conference papers16 documents

  • Cyril Pommier, Eric Duchêne, Thierry Lacombe, Timothée Flutre, Michael Alaux, et al.. Developing grapevine FAIR Data. PAG Conference 2018, Jan 2018, San Diego, United States. ⟨hal-02738117⟩
  • Michael Alaux, Jane Rogers, Thomas Letellier, Raphaël Flores, Cyril Pommier, et al.. The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides. ⟨hal-02788401⟩
  • Michael Alaux, Cyril Pommier, Esther Dzale Yeumo, Sophie Durand, Raphaël Flores, et al.. Improving the « FAIRness » of Inra’s data for plant biology and breeding. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides. ⟨hal-02790227⟩
  • Mathilde Lainé, Thomas Letellier, Raphaël Flores, Nacer Mohellibi, Cyril Pommier, et al.. BreedWheat GWAS data in GnpIS information system. Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France. ⟨hal-02340450⟩
  • Michael Alaux, Thomas Letellier, Françoise Alfama Depauw, Jane Rogers, Frédéric Choulet, et al.. The IWGSC Reference genome browser, data mining and beyond. PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States. ⟨hal-02788141⟩
  • Sophie Durand, Windpouire Esther Dzale Yeumo, Cyril Pommier, Michael Alaux, Guillaume Cornut, et al.. Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA. 4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides. ⟨hal-02791168⟩
  • Michael Alaux, Thomas Letellier, Françoise Alfama-Depauw, Veronique Jamilloux, Jane Rogers, et al.. IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. ⟨hal-01266518⟩
  • Cyril Pommier, Michael Alaux, Windpouire Esther Dzale Yeumo, Guillaume Cornut, Sophie Durand, et al.. Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA. Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic. ⟨hal-02794139⟩
  • Cyril Pommier, Pawel Krajewski, Thomas Letellier, Hanna Cwiek, Célia Michotey, et al.. Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii. 23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States. ⟨hal-02739236⟩
  • Nacer Mohellibi, Nathalie Choisne, Aminah Keliet, Daphné Verdelet, Françoise Alfama, et al.. Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource. 23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, Californie, United States. pp.24 slides. ⟨hal-02741780⟩
  • Michael Alaux, Frédéric Choulet, Loïc Couderc, Françoise Alfama-Depauw, Veronique Jamilloux, et al.. IWGSC sequence repository : how to facilitate pseudomolecule assembly?. PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States. ⟨hal-02741662⟩
  • Delphine Steinbach, Guillaume Merceron, Célia Michotey, Raphaël-Gauthier Flores, Nacer Mohellibi, et al.. GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data. 23. Plant and Animal Genome, Jan 2015, San Diego, United States. ⟨hal-01174322⟩
  • Cyril Pommier, Michael Alaux, Sophie Durand, Raphaël-Gauthier Flores, Aminah Keliet, et al.. Information system for phenotype data: trait, trials and genotypes identification and integration. 22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States. ⟨hal-02795958⟩
  • Anne-Francoise Adam-Blondon, Sophie Durand, Erik Kimmel, Raphaël-Gauthier Flores, Cyril Pommier, et al.. Plant biology open data interoperability in the big data era. Plant Biology Europe EPSO/FEPBS 2014, Jun 2014, Dublin, Germany. ⟨hal-02801067⟩
  • Michael Alaux, Françoise Alfama-Depauw, Véronique Jamilloux, Raphaël Flores, Daphné Verdelet, et al.. IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequence. PAG XXI - Plant and Animal Genome, Jan 2013, San Diego, United States. ⟨hal-02804578⟩
  • Célia Michotey, Frédéric Sapet, Pierre Dubreuil, Jacques Le Gouis, Mathilde Causse, et al.. A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping. Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France. ⟨hal-01268379⟩

Poster communications4 documents

  • Emmanuel Medernach, Jérôme Pansanel, Raphaël Flores, Christine Gondrand, Patrick Moreau, et al.. FG-iRODS : un service de gestion de données pour les communautés scientifiques à l'échelle nationale et européenne basé une infrastructure fédérée. JCAD 2019 - Journées Calcul Données, Oct 2019, Toulouse, France. 1 p., 2019. ⟨hal-02786994⟩
  • Sophie Durand, Esther Dzale Yeumo, Cyril Pommier, Michaël Alaux, Guillaume Cornut, et al.. Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA. Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. 2017, EUCARPIA Genetic Resources 2017. ⟨hal-01606277⟩
  • Marie Laine, Thomas Letellier, Raphaël-Gauthier Flores, Loïc Couderc, Nacer Mohellibi, et al.. BreedWheat genotyping and phenotyping data in GnpIS information system. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015. ⟨hal-02801654⟩
  • Florian Philippe, Aravind Venkatesan, Nordine El Hassouni, Cyril Pommier, Manuel Ruiz, et al.. Data integration in the agronomic domain : national and international data discovery system. JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015. ⟨lirmm-01274725⟩

Book sections2 documents