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Ralf Koebnik

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Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads

Ralf Koebnik , Sophie Cesbron , Nicolas W. G. Chen , Marion Fischer-Le Saux , Mathilde Hutin
Peer Community Journal, 2024, 4, pp.e19. ⟨10.24072/pcjournal.385⟩
Article dans une revue ird-04483657v1
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Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads

Ralf Koebnik , Sophie Cesbron , Nicolas W G Chen , Marion Fischer-Le Saux , Mathilde Hutin
Peer Community Journal, 2024, 4, pp.e19. ⟨10.24072/pcjournal.385⟩
Article dans une revue ird-04498292v1
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Integrating Science on Xanthomonas and Xylella for Integrated Plant Disease Management

Joana Costa , Joël F Pothier , Jens Boch , Emilio Stefani , Ralf Koebnik
Microorganisms, 2023, 11 (1), pp.6. ⟨10.3390/microorganisms11010006⟩
Article dans une revue ird-03967356v1
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CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator‐like effectors in two divergent pathogens

Carlos Andrés Zárate-Chaves , Corinne Audran , César Augusto Medina Culma , Aline Escalon , Stéphanie Javegny
New Phytologist, inPress, 238 (4), pp.1593-1604. ⟨10.1111/nph.18808⟩
Article dans une revue hal-04058189v1

Comparative Genomics Identifies Conserved and Variable TAL Effectors in African Strains of the Cotton Pathogen Xanthomonas citri pv. malvacearum

Alvaro Luis Perez Quintero , Luis Rodriguez-R , Sara Cuesta-Morrondo , Eliška Hakalová , Daniela Betancurt-Anzola
Phytopathology, 2023, 113 (8), pp.1387-1393. ⟨10.1094/PHYTO-12-22-0477-SC⟩
Article dans une revue hal-04276735v1
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A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis

Leidy Rache , Laurence Blondin , Paula Diaz Tatis , Carolina Flores , Andrea Camargo
PLoS ONE, 2023, 18 (5), pp.e0285491. ⟨10.1371/journal.pone.0285491⟩
Article dans une revue hal-04292499v1
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A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity and Genetic Control of Xanthomonads

Joana Costa , Joël F Pothier , Eran Bosis , Jens Boch , Roland Kölliker
Molecular Plant-Microbe Interactions, 2023, ⟨10.1094/MPMI-11-23-0184-FI⟩
Article dans une revue ird-04483595v1
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PM 7/44 (2) Xanthomonas citri pv. citri and Xanthomonas citri pv. aurantifolii

Olivier Pruvost , Isabelle Robène , Aude Chabirand , Ralf Koebnik , Vittoria Catara
EPPO Bulletin, 2023, 53 (1), pp.62-96. ⟨10.1111/epp.12913⟩
Article dans une revue ird-04498414v1
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Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains

Hamzeh Mafakheri , S. Mohsen Taghavi , Sadegh Zarei , Touraj Rahimi , Mohammad Sadegh Hasannezhad
Microbiology Spectrum, 2022, 10 (1), 18 p. ⟨10.1128/spectrum.00577-21⟩
Article dans une revue hal-03576592v1
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Complete Genome Assemblies of All Xanthomonas translucens Pathotype Strains Reveal Three Genetically Distinct Clades

Florian Goettelmann , Veronica Roman-Reyna , Sébastien Cunnac , Jonathan Jacobs , Claude Bragard
Frontiers in Microbiology, 2022, 12, pp.817815. ⟨10.3389/fmicb.2021.817815⟩
Article dans une revue hal-03626316v1
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Editorial: Population and comparative genomics of plant pathogenic bacteria

Sujan Timilsina , Erica M Goss , Ralf Koebnik , Neha Potnis , Jeffrey Jones
Frontiers in Microbiology, 2022, 13, ⟨10.3389/fmicb.2022.1012034⟩
Article dans une revue hal-03813550v1
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Xanthomonas hortorum – beyond gardens: Current taxonomy, genomics, and virulence repertoires

Nay C Dia , Lucas Moriniere , Bart Cottyn , Eduardo Bernal , Jonathan M Jacobs
Molecular Plant Pathology, 2022, 23 (5), pp.597-621. ⟨10.1111/mpp.13185⟩
Article dans une revue hal-03559066v1
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Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey

Songül Erken Meral , Shaheen Bibi , Carlos Andrés Díaz Rodríguez , Jelena Menković , Adriana Bernal
Microbiology Resource Announcements, 2022, 11 (3), pp.e00022-22. ⟨10.1128/mra.00022-22⟩
Article dans une revue hal-03626321v1

Complete Genome Sequence Resource for Xanthomonas translucens pv. undulosa MAI5034, a Wheat Pathogen from Uruguay

Felipe Clavijo , Claudia Barrera , Aleksander Benčič , Valentina Croce , Jonathan Jacobs
Phytopathology, 2022, 112 (9), pp.2036-2039. ⟨10.1094/phyto-01-22-0025-a⟩
Article dans une revue hal-03717518v1
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Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time

Ninon Bellanger , Alexis Dereeper , Ralf Koebnik
Microorganisms, 2022, 10 (9), ⟨10.3390/microorganisms10091715⟩
Article dans une revue hal-03813531v1
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Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas

Vittoria Catara , Jaime Cubero , Joël Pothier , Eran Bosis , Claude Bragard
Microorganisms, 2021, 9 (4), pp.862. ⟨10.3390/microorganisms9040862⟩
Article dans une revue hal-03217200v1
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Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme

Taca Vancheva , Nevena Bogatzevska , Penka Moncheva , Sasa Mitrev , Christian Vernière
Microorganisms, 2021, 9 (3), pp.536. ⟨10.3390/microorganisms9030536⟩
Article dans une revue hal-03205487v1

Genomics-Informed Multiplex PCR Scheme for Rapid Identification of Rice-Associated Bacteria of the Genus Pantoea

Kossi Kini , Raoul Agnimonhan , Rachelle Dossa , Drissa Silué , Ralf Koebnik
Plant Disease, 2021, 105 (9), pp.2389-2394. ⟨10.1094/PDIS-07-20-1474-RE⟩
Article dans une revue hal-03510899v1
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An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection

Ganna Reshetnyak , Jonathan M Jacobs , Florence Auguy , Coline Sciallano , Lisa Claude
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-03391-9⟩
Article dans une revue hal-03514038v1
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Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice

Kossi Kini , Issa Wonni , Drissa Silué , Ralf Koebnik
MethodsX, 2021, 8, pp.101216. ⟨10.1016/j.mex.2021.101216⟩
Article dans une revue hal-03626200v1
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Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe

Joana Costa , Joël Pothier , Jens Boch , Emilio Stefani , Marie-Agnès Jacques
Molecular Plant Pathology, 2021, 22 (12), pp.1461-1463. ⟨10.1111/mpp.13150⟩
Article dans une revue hal-03521764v1
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Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium

Albin Teulet , Djamel Gully , Zoe Rouy , Alicia Camuel , Ralf Koebnik
Microbial Genomics, 2020, 6 (9), ⟨10.1099/mgen.0.000407⟩
Article dans une revue hal-03127250v1
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The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought

Paola A. Zuluaga , Przemyslaw Bidzinski , Emilie Chanclud , Aurélie Ducasse , Bastien Cayrol
Frontiers in Plant Science, 2020, 11, pp.1265. ⟨10.3389/fpls.2020.01265⟩
Article dans une revue hal-02927839v1

Genome Resources of Three West African Strains of Pantoea ananatis Causing Bacterial Blight and Grain Discoloration of Rice

Kossi Kini , Pierre Lefeuvre , Lucie Poulin , Drissa Silué , Ralf Koebnik
Phytopathology, 2020, 110 (9), pp.1500-1502. ⟨10.1094/PHYTO-03-20-0091-A⟩
Article dans une revue hal-03626195v1
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High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing

Stephen P. Cohen , Emily K. Luna , Jillian M. Lang , Janet Ziegle , Christine Chang
Plant Disease, 2020, pp.PDIS-11-19-2393. ⟨10.1094/PDIS-11-19-2393-A⟩
Article dans une revue hal-02624813v1
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Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles

Gluck-Thaler, Emile , A. Cerruti , Alvaro L. Pérez-Quintero , Roman-Reyna, Veronica , Madhavan, Vishnu
Science Advances , 2020, 6 (46), ⟨10.1126/sciadv.abc4516⟩
Article dans une revue hal-03177564v1

The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads

Ralf Koebnik , Daiva Burokiene , Claude Bragard , Christine Chang , Marion Fischer-Le Saux
Phytopathology, 2020, 111 (4), pp.611-616. ⟨10.1094/PHYTO-07-20-0273-SC⟩
Article dans une revue hal-02976163v1
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CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

Kwanho Jeong , Alejandra Muñoz-Bodnar , Nathalia Arias Rojas , Lucie Poulin , Luis Miguel Rodriguez-R
BMC Genomics, 2019, 20 (1), pp.1-19. ⟨10.1186/s12864-019-6267-z⟩
Article dans une revue hal-02403788v1
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The rhizobial type III effector ErnA confers the ability to form nodules in legumes

Albin Teulet , Nicolas Busset , Joël Fardoux , Djamel Gully , Clémence Chaintreuil
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (43), pp.21758-21768. ⟨10.1073/pnas.1904456116⟩
Article dans une revue hal-02318403v1
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Isolation of atypical wheat-associated xanthomonads in Algeria

Bahria Khenfous-Djebari , Marion Fischer-Le Saux , Mohamed Kerkoud , Traki Benhassine , Zouazi Bouznad
Phytopathologia Mediterranea, 2019, 58 (3), pp.497-506. ⟨10.13128/Phyto-10855⟩
Article dans une revue hal-02971104v1

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis

Leidy Rache , Laurence Blondin , Carolina Flores , Cesar Trujillo , Boris Szurek
Phytopathology, 2019, 109 (5), pp.859-869. ⟨10.1094/PHYTO-06-18-0210-R⟩
Article dans une revue hal-02617945v1
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Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

Tuan Tran , Alvaro Pérez-Quintero , Issa Wonni , Sara Carpenter , Yanhua Yu
PLoS Pathogens, 2018, 14 (6), pp.e1007092. ⟨10.1371/journal.ppat.1007092⟩
Article dans une revue hal-03626132v1

Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran

Ebrahim Osdaghi , Seyed Mohsen Taghavi , Ralf Koebnik , Jay Ram Lamichhane
Plant Pathology, 2018, 67 (7), pp.1601-1611. ⟨10.1111/ppa.12864⟩
Article dans une revue hal-02621197v1
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Efficient enrichment cloning of TAL effector genes from Xanthomonas

T.T. Tran , H. Doucouré , M. Hutin , L.M. Jaimes Niño , B. Szurek
MethodsX, 2018, 5, pp.1027-1032. ⟨10.1016/j.mex.2018.08.014⟩
Article dans une revue hal-03626143v1
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Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

Nicolas Chen , Laurana Serres-Giardi , Mylène Ruh , Martial Briand , Sophie Bonneau
BMC Genomics, 2018, 19 (1), 20 p. ⟨10.1186/s12864-018-4975-4⟩
Article dans une revue hal-02627510v1

Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran

Ebrahim Osdaghi , Muhammad Sajjad Ansari , Seyed Mohsen Taghavi , Sina Zarei , Ralph Koebnik
Plant Pathology, 2018, 67 (4), pp.957-970. ⟨10.1111/ppa.12801⟩
Article dans une revue hal-02623769v1
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Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF

Céline Pesce , Jonathan Jacobs , Edwige Berthelot , Marion Perret , Taca Vancheva
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01177⟩
Article dans une revue hal-03626112v1
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Effector Mimics and Integrated Decoys, the Never-Ending Arms Race between Rice and Xanthomonas oryzae

Paola Zuluaga Cruz , Boris Szurek , Ralf Koebnik , Thomas Kroj , Jean-Benoit Morel
Frontiers in Plant Science, 2017, 8, pp.1-4. ⟨10.3389/fpls.2017.00431⟩
Article dans une revue hal-01605934v1
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High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

Ebrahim Osdaghi , Natalia Forero Serna , Stéphanie Bolot , Marion Fischer-Le Saux , Marie-Agnès Jacques
Genome Announcements, 2017, 5 (48), pp.e01378-17. ⟨10.1128/genomeA.01378-17⟩
Article dans une revue hal-01905579v1
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Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14 -inducing TAL effectors

Servane Blanvillain-Baufumé , Maik Reschke , Montserrat Solé , Florence Auguy , Hinda Doucoure
Plant Biotechnology Journal, 2017, 15 (3), pp.306-317. ⟨10.1111/pbi.12613⟩
Article dans une revue hal-03626092v1
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Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens

Daniel Garçia Seco , Marco Chiapello , Marcella Bracale , Céline Pesce , Paolo Bagnaresi
Scientific Reports, 2017, 7 (1), pp.10157. ⟨10.1038/s41598-017-10568-8⟩
Article dans une revue hal-03626122v1
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High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

I. Robène , Stéphanie S. Bolot , Olivier Pruvost , Matthieu Arlat , Laurent Noel
Genome Announcements, 2016, 4 (5), pp.e00902-16. ⟨10.1128/genomeA.00902-16⟩
Article dans une revue hal-02629928v1

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère
Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩
Article dans une revue hal-03383508v1
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Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases

Mathilde Hutin , Stella Cesari , Véronique Chalvon , Corinne Michel , Tuan Tu Tran
Plant Journal, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Article dans une revue hal-02637573v1

New Multilocus Variable-Number Tandem-Repeat Analysis Tool for Surveillance and Local Epidemiology of Bacterial Leaf Blight and Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae

L. Poulin , P. Grygiel , M. Magne , L. Gagnevin , L. M. Rodriguez-R
Applied and Environmental Microbiology, 2015, 81 (2), pp.688-698. ⟨10.1128/AEM.02768-14⟩
Article dans une revue hal-03625189v1
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Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula

Taca Vancheva , Pierre Lefeuvre , Nevena Bogatzevska , Penka Moncheva , Ralf Koebnik
Genome Announcements, 2015, 3 (1), pp.e01528-14. ⟨10.1128/genomeA.01528-14⟩
Article dans une revue hal-03625220v1
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Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula

Taca Vancheva , Nevena Bogatzevska , Penka Moncheva , Pierre Lefeuvre , Ralf Koebnik
Genome Announcements, 2015, 3 (1), pp.e01558-14. ⟨10.1128/genomeA.01558-14⟩
Article dans une revue hal-03625226v1
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High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

Céline Pesce , Stéphanie Bolot , Sébastien Cunnac , Perrine Portier , Marion Le Saux
Genome Announcements, 2015, 3 (1), ⟨10.1128/genomeA.01574-14⟩
Article dans une revue hal-01209993v1

A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice

Mathilde Hutin , Francois Sabot , Alain Ghesquière , Ralf Koebnik , Boris Szurek
Plant Journal, 2015, 84 (4), pp.694-703. ⟨10.1111/tpj.13042⟩
Article dans une revue hal-03219869v1
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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Brice Roux , Stéphanie Bolot , Endrick Guy , Nicolas Denancé , Martine Lautier
BMC Genomics, 2015, 16 (1), pp.975. ⟨10.1186/s12864-015-2190-0⟩
Article dans une revue hal-01455988v1
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Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053

Céline Pesce , Stéphanie Bolot , Edwige Berthelot , Claude Bragard , Sebastien Cunnac
Genome Announcements, 2015, 3 (5), pp.e01174-15. ⟨10.1128/genomeA.01174-15⟩
Article dans une revue hal-01594261v1
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A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage

Olivier Pruvost , Maxime Magne , Karine Boyer , Alice Leduc , Christophe Tourterel
PLoS ONE, 2014, 9 (6), pp.e98129. ⟨10.1371/journal.pone.0098129⟩
Article dans une revue hal-01456735v1
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Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

Lionel Gagnevin , Stéphanie Bolot , J L Gordon , Olivier Pruvost , Christian Vernière
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00727-14⟩
Article dans une revue hal-01209994v1
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Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884

A. Indiana , M. Briand , Matthieu Arlat , Lionel Gagnevin , R. Koebnik
Genome Announcements, 2014, 2 (5), pp.e00966-14. ⟨10.1128/genomeA.00966-14⟩
Article dans une revue hal-01134880v1
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The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

Ofir Bahar , Rory Pruitt , Dee Dee Luu , Benjamin Schwessinger , Arsalan Daudi
PeerJ, 2014, 2, pp.e242. ⟨10.7717/peerj.242⟩
Article dans une revue hal-03624834v1
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Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers

César Trujillo , Nathalia Arias-Rojas , Lucie Poulin , César Medina , Anibal Tapiero
BMC Microbiology, 2014, 14 (1), pp.161. ⟨10.1186/1471-2180-14-161⟩
Article dans une revue hal-03624881v1
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Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Stéphanie S. Bolot , Alejandra Munoz Bodnar , Sébastien Cunnac , Erika Ortiz , Boris Szurek
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00679-13⟩
Article dans une revue hal-02642222v1
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High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

Marie Agnes Jacques , Stéphanie S. Bolot , Erika Charbit , Armelle Darrasse , Martial Briand
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01035-13⟩
Article dans une revue hal-02649259v1
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High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

Armelle Darrasse , Stéphanie S. Bolot , Laurana Serres Giardi , Erika Charbit , Tristan Boureau
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01036-13⟩
Article dans une revue hal-02648487v1
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Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151

Mario L. Arrieta-Ortiz , Luis M. Rodríguez-R , Alvaro L. Pérez-Quintero , Lucie Poulin , Ana C. Díaz
PLoS ONE, 2013, 8 (11), pp.e79704. ⟨10.1371/journal.pone.0079704⟩
Article dans une revue hal-01199314v1
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High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

Sébastien Cunnac , Stéphanie S. Bolot , Natalia Forero Serna , Erika Ortiz , Boris Szurek
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00674-13⟩
Article dans une revue hal-02643147v1
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Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valerie Barbe , Guillaume P. Robin
BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-658⟩
Article dans une revue hal-01209938v1
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Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Armelle Darrasse , Sebastien Carrere , Valérie Barbe , Tristan Boureau , Mario L. Arrieta-Ortiz
BMC Genomics, 2013, 14, pp.761--790. ⟨10.1186/1471-2164-14-761⟩
Article dans une revue hal-01199326v1
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Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
BMC Genomics, 2012, 13 (1), pp.658--680. ⟨10.1186/1471-2164-13-658⟩
Article dans une revue hal-01199327v1

Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae

Ahmed Hajri , Chrystelle Brin , Shuai Zhao , Perrine David , Jia-Xu Feng
Molecular Plant Pathology, 2012, 13 (3), pp.288--302. ⟨10.1111/j.1364-3703.2011.00745.x⟩
Article dans une revue hal-01199331v1

Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene

Yanhua Yu , Jana Streubel , Sandrine Balzergue , Antony Champion , Jens Boch
Molecular Plant-Microbe Interactions, 2011, 24 (9), pp.1102 - 1113. ⟨10.1094/MPMI-11-10-0254⟩
Article dans une revue hal-02647827v1

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J. Bogdanove , Ralf Koebnik , Hong Lu , Ayako Furutani , Samuel V. Angiuoli
Journal of Bacteriology, 2011, 193 (19), pp.5450-5464. ⟨10.1128/JB.05262-11⟩
Article dans une revue hal-02650254v1

Membrane topology of conserved components of the type III secretion system from the plant pathogen Xanthomonas campestris pv. vesicatoria.

Carolin Berger , Guillaume P Robin , Ulla Bonas , Ralf Koebnik
Microbiology, 2010, 156 (Pt 7), pp.1963-74. ⟨10.1099/mic.0.039248-0⟩
Article dans une revue hal-00788092v1

Passing GO (gene ontology) in plant pathogen biology : a report from the Xanthomonas Genomics Conference

Robert P. Ryan , Ralf Koebnik , Boris Szurek , Tristan Boureau , Adriana Bernal
Cellular Microbiology, 2009, 11 (12), pp.1689-1696. ⟨10.1111/j.1462-5822.2009.01387.x⟩
Article dans une revue hal-02658546v1
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The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
BMC Genomics, 2009, 10, pp.616. ⟨10.1186/1471-2164-10-616⟩
Article dans une revue hal-00730090v1

Specific binding of the Xanthomonas campestris pv. vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes.

Ralf Koebnik , Antje Krüger , Frank Thieme , Alexander Urban , Ulla Bonas
Journal of Bacteriology, 2006, 188 (21), pp.7652-60. ⟨10.1128/JB.00795-06⟩
Article dans une revue hal-00163972v1

The Type III-Dependent Hrp Pilus Is Required for Productive Interaction of Xanthomonas campestris pv. vesicatoria with Pepper Host Plants

Ernst Weber , Tuula Ojanen-Reuhs , Elisabeth Huguet , Gerd Hause , Martin Romantschuk
Journal of Bacteriology, 2005, 187 (7), pp.2458-2468. ⟨10.1128/JB.187.7.2458-2468.2005⟩
Article dans une revue hal-03622583v1

Domain Structure of HrpE, the Hrp Pilus Subunit of Xanthomonas campestris pv. vesicatoria

Ernst Weber , Ralf Koebnik
Journal of Bacteriology, 2005, 187 (17), pp.6175-6186. ⟨10.1128/JB.187.17.6175-6186.2005⟩
Article dans une revue hal-03622616v1

TonB-dependent trans-envelope signalling: the exception or the rule?

Ralf Koebnik
Trends in Microbiology, 2005, 13 (8), pp.343-347. ⟨10.1016/j.tim.2005.06.005⟩
Article dans une revue hal-03622601v1

The role of bacterial pili in protein and DNA translocation

Ralf Koebnik
Trends in Microbiology, 2001, 9 (12), pp.586-590. ⟨10.1016/S0966-842X(01)02255-7⟩
Article dans une revue hal-03621371v1

Sucrose transport through maltoporin mutants of Escherichia coli

Patrick van Gelder , Raimund Dutzler , Fabrice Dumas , Ralf Koebnik , Tilman Schirmer
Protein Engineering, Design and Selection, 2001, 14 (11), pp.943-948. ⟨10.1093/protein/14.11.943⟩
Article dans une revue hal-03621359v1

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

Ralf Koebnik , Kaspar Locher , Patrick van Gelder
Molecular Microbiology, 2000, 37 (2), pp.239-253. ⟨10.1046/j.1365-2958.2000.01983.x⟩
Article dans une revue hal-03621348v1

Extended Sugar Slide Function for the Periplasmic Coiled Coil Domain of ScrY

Fabrice Dumas , Sabine Frank , Ralf Koebnik , Emeline Maillet , Ariel Lustig
Journal of Molecular Biology, 2000, 300 (4), pp.687-695. ⟨10.1006/jmbi.2000.3897⟩
Article dans une revue hal-03621353v1

Sugar Transport through Maltoporin of Escherichia coli

Fabrice Dumas , Ralf Koebnik , Mathias Winterhalter , Patrick van Gelder
Journal of Biological Chemistry, 2000, 275 (26), pp.19747-19751. ⟨10.1074/jbc.M000268200⟩
Article dans une revue hal-03621341v1

Membrane assembly of the Escherichia coli outer membrane protein OmpA: exploring sequence constraints on transmembrane β-strands

Ralf Koebnik
Journal of Molecular Biology, 1999, 285 (4), pp.1801-1810. ⟨10.1006/jmbi.1998.2405⟩
Article dans une revue hal-03621329v1

Structural and Functional Roles of the Surface-Exposed Loops of the β-Barrel Membrane Protein OmpA from Escherichia coli

Ralf Koebnik
Journal of Bacteriology, 1999, 181 (12), pp.3688-3694. ⟨10.1128/JB.181.12.3688-3694.1999⟩
Article dans une revue hal-03621334v1

Identification and Characterization of Two Quiescent Porin Genes, nmpC and ompN , in Escherichia coli B E

Alexej Prilipov , Prashant Phale , Ralf Koebnik , Christine Widmer , Jurg Rosenbusch
Journal of Bacteriology, 1998, 180 (13), pp.3388-3392. ⟨10.1128/JB.180.13.3388-3392.1998⟩
Article dans une revue hal-03621278v1

Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli

Alexej Prilipov , Prashant Phale , Patrick Gelder , Jurg Rosenbusch , Ralf Koebnik
FEMS Microbiology Letters, 1998, 163 (1), pp.65-72. ⟨10.1111/j.1574-6968.1998.tb13027.x⟩
Article dans une revue hal-03621269v1

Transmembrane Signaling across the Ligand-Gated FhuA Receptor

Kaspar Locher , Bernard Rees , Ralf Koebnik , André Mitschler , Luc Moulinier
Cell, 1998, 95 (6), pp.771-778. ⟨10.1016/S0092-8674(00)81700-6⟩
Article dans une revue hal-03621295v1

Stability of Trimeric OmpF Porin: The Contributions of the Latching Loop L2

Prashant Phale , Ansgar Philippsen , Thomas Kiefhaber , Ralf Koebnik , Vrishali Phale
Biochemistry, 1998, 37 (45), pp.15663-15670. ⟨10.1021/bi981215c⟩
Article dans une revue hal-03621287v1

In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA

Ralf Koebnik
The EMBO Journal, 1996, 15 (14), pp.3529-3537. ⟨10.1002/j.1460-2075.1996.tb00722.x⟩
Article dans une revue hal-03620649v1

Proposal for a peptidoglycan-associating alpha-helical motif in the C-terminal regions of some bacterial cell-surface proteins

Ralf Koebnik
Molecular Microbiology, 1995, 16 (6), pp.1269-1270. ⟨10.1111/j.1365-2958.1995.tb02348.x⟩
Article dans une revue hal-03620644v1

Membrane Assembly of Circularly Permuted Variants of the E. coli Outer Membrane Protein OmpA

Ralf Koebnik , Lisa Krämer
Journal of Molecular Biology, 1995, 250 (5), pp.617-626. ⟨10.1006/jmbi.1995.0403⟩
Article dans une revue hal-03620647v1

Membrane topology and assembly of the outer membrane protein OmpA of Escherichia coli K12

Georg Ried , Ralf Koebnik , Ingrid Hindennach , Bettina Mutschler , Ulf Henning
Molecular and General Genetics MGG, 1994, 243 (2), pp.127-135. ⟨10.1007/BF00280309⟩
Article dans une revue hal-03620638v1

The TonB-dependent ferrichrome receptor FcuA of Yersinia enterocolitica: evidence against a strict co-evolution of receptor structure and substrate specificity

Ralf Koebnik , Klaus Hantke , Volkmar Braun , Andreas Bäumler , Jürgen Heesemann
Molecular Microbiology, 1993, 7 (3), pp.383-393. ⟨10.1111/j.1365-2958.1993.tb01130.x⟩
Article dans une revue hal-03620625v1

The molecular interaction between components of the TonB-ExbBD-dependent and of the TolQRA-dependent bacterial uptake systems

Ralf Koebnik
Molecular Microbiology, 1993, 9 (1), pp.219. ⟨10.1111/j.1365-2958.1993.tb01683.x⟩
Article dans une revue hal-03620634v1

Structural organization of TonB-dependent receptors

Ralf Koebnik
Trends in Microbiology, 1993, 1 (5), pp.201. ⟨10.1016/0966-842X(93)90092-6⟩
Article dans une revue hal-03620636v1

Insertion derivatives containing segments of up to 16 amino acids identify surface- and periplasm-exposed regions of the FhuA outer membrane receptor of Escherichia coli K-12

Ralf Koebnik , Volkmar Braun
Journal of Bacteriology, 1993, 175 (3), pp.826-839. ⟨10.1128/jb.175.3.826-839.1993⟩
Article dans une revue hal-03620628v1

The TonB protein of Yersinia enterocolitica and its interactions with TonB-box proteins

Ralf Koebnik , Andreas Bäumler , Jürgen Heesemann , Volkmar Braun , Klaus Hantke
Molecular and General Genetics MGG, 1993, 237-237 (1-2), pp.152-160. ⟨10.1007/BF00282796⟩
Article dans une revue hal-03620626v1

Survey on Newly Characterized Iron Uptake Systems of Yersinia enterocolitica

Andreas Bäumler , Ralf Koebnik , Igor Stojiljkovic , Jürgen Heesemann , Volkmar Braun
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1993, 278 (2-3), pp.416-424. ⟨10.1016/S0934-8840(11)80858-3⟩
Article dans une revue hal-03620633v1

CRISPRI AS A TOOL FOR THE FUNCTIONAL STUDY OF GENE FAMILIES IN XANTHOMONAS

Carlos Andrés Zárate-Chaves , Corinne Audran , César Augusto Medina Culma , Escalone Aline , Stéphanie Javegny
ICPP2023, Aug 2023, Lyon, France
Communication dans un congrès hal-04208321v1

A single cellobiosidase is required for barley hydathode and xylem colonization by Xanthomonas translucens

Aude Cerutti , Alain Jauneau , Marie-Christine Auriac , J. Butchacas , E. Gluck-Thaler
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Communication dans un congrès hal-02735197v1

Ebb and flow of vascular pathogenesis through repeated gain and loss of a molecular switch

E. Gluck-Thaler , Aude Cerutti , A. L. Perez Quintero , C. Pesce , Alain Jauneau
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Communication dans un congrès hal-02735187v1

Surveillance and control of cassava diseases in Africa - International meeting results in Pan-African cassava disease network

Jean-Michel Lett , Michel Roux-Cuvelier , Abdou Azali Hamza , H. Atta Diallo , Larry Beach
World Congress on Root and Tuber Crops, Jan 2016, Guangxi, China
Communication dans un congrès hal-01456753v1

Tandem repeats as genotyping tools for understanding the genetic structure and epidemiology of #Xanthomonas citri# pv. #citri#

Alice Leduc , Yaya Nadia Traoré , Karine Boyer , Maxime Magne , Pierre Grygiel
Xanthomonas Genomics Conference 2015, Jul 2015, Bogota, Colombia
Communication dans un congrès hal-01456715v1

Comparative genomics and transcriptomics of #Xanthomonas campestris# : Session 3- Physiologie, génétique et génomique des bactéries

Stéphanie Bolot , Brice Roux , Endrick Guy , Nicolas Denancé , Martine Lautier
11èmes Rencontres Plantes-Bactéries, Feb 2014, Aussoies, France. pp.40
Communication dans un congrès hal-01456725v1

Genome and transcriptome analysis to reveal adaptation to new environments and hosts

Lionel Gagnevin , Brice Roux , Stéphanie Bolot , Sebastien Carrere , Erika Charbit
APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Communication dans un congrès hal-01209932v1

Genome mining reveals a novel and promising NRPS gene cluster in #Xanthomonas albilineans#, #Xanthomonas oryzae# and #Xanthomonas translucens#

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valérie Barbe , Guillaume P. Robin
59° Congresso Brasileiro de Genética, Sep 2013, Águas de Lindóia, Brazil
Communication dans un congrès hal-01456738v1

Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads. [Abstract]

Armelle Darrasse , Sébastien Carrere , Valérie Barbe , Tristan Bourreau , Adriana Bernal
4th Xanthomonas Genomics Conference, Jul 2012, Angers, France
Communication dans un congrès hal-01202944v1

Evidences for selection on promoter region reveal a hidden aspect of the multifaceted evolution of the type three effector Avrbs2 in the Xanthomonas axonopodis species

P. David , Ahmed Hajri , C Rousseau , Chrystelle Brin , Sophie Bonneau
International meeting on communication in plants and their responses to the environment, May 2011, ZZ, Unknown Region
Communication dans un congrès hal-01202956v1

The complete genome sequence of Xanthomonas albilineans provides insights into pathogenicity of this sugarcane pathogen and allows further assessments of the large diversity within this species

Isabelle Pieretti , Stéphane Cociancich , Valerie Barbe , Sébastien Carrere , Ralf Koebnik
5th European conference on prokaryotic and fungal genomics, Sep 2011, Göttingen, Germany
Communication dans un congrès hal-01202957v1

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik
14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec City, Canada. 2 p
Communication dans un congrès hal-02817753v1

A novel molecular typing system for pathogenic xanthomonads

Alejandra Munoz Bodnar , Karine Durand , Christian Vernière , Olivier Pruvost , Marie Agnes Jacques
Xanthomonas Genomic Conference 2009, Jul 2009, Pingree Park, Colorado, United States
Communication dans un congrès hal-02756197v1

La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème

I. Pieretti , M. Royer , Valérie Barbe , S. Carrere , R. Koebnik
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon (FRA), France
Communication dans un congrès hal-00729249v1

La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p
Communication dans un congrès hal-02824029v1

La séquence du génome de Xanthomonas albilineans dévoile des particularités surprenantes chez cette bactérie pathogène de la canne à sucre

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
8èmes Rencontres plantes-bactéries, Jan 2008, Aussoies, France
Communication dans un congrès hal-01202965v1

Comparative genomics and evolution of bacterial type III effectors

Ralf Koebnik , Magdalen Lindeberg
Effectors in Plant–Microbe Interactions, 1, Wiley, 2011, ⟨10.1002/9781119949138.ch3⟩
Chapitre d'ouvrage hal-03623147v1

Adhesion Mechanisms of Plant-Pathogenic Xanthomonadaceae

Nadia Mhedbi-Hajri , Marie Agnes Jacques , Ralf Koebnik
Bacterial adhesion : chemistry, biology and physics, 715, Springer International, 374 p., 2011, Advances in Experimental Medicine and Biology, 978-94-007-0940-9. ⟨10.1007/978-94-007-0940-9_5⟩
Chapitre d'ouvrage hal-02811489v1

Chapter 18 Outer membrane proteins of Escherichia coli: mechanism of sorting and regulation of synthesis

Ulf Henning , Ralf Koebnik
Bacterial Cell Wall, 27, Elsevier, pp.381-395, 1994, New Comprehensive Biochemistry, ⟨10.1016/S0167-7306(08)60421-4⟩
Chapitre d'ouvrage hal-03620642v1

AnnoTALE - Identification, Annotation and Classification of Transcription Activator-Like Effectors

Annett Erkes , Jan Grau , Maik Reschke , Jana Streubel , Richard D. Morgan
Poster abstracts of GCB 2015, Sep 2015, Dortmund, Germany. ⟨10.7287/peerj.preprints.1350v2⟩
Poster de conférence hal-03625254v1

Surveillance and control of cassava diseases in Africa

Jean-Michel Lett , Michel Roux-Cuvelier , Abdou Azali Hamza , H. Atta Diallo , Larry Beach
International workshop : Surveillance and control of cassava diseases in Africa, Jun 2014, Saint-Pierre, Réunion. 2014
Poster de conférence hal-01456754v1