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Rafael Muñoz-Tamayo

Rafael Muñoz-Tamayo
89
Documents

Présentation

I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Université Paris-Sud (France). I am a researcher at [INRAE](https://www.inrae.fr/en) (France) in the [ MoSAR](https://eng-mosar.versailles-grignon.hub.inrae.fr/research) team since 2014. My research motivation is to develop a quantitative understanding of biological processes using modelling to combine and structure information across disciplines. My research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal *via* an interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal nutrition, computational biology and mathematical modelling. My ultimate goal is to produce innovative model-based solutions to major challenges facing agriculture such as efficient ruminant production. I have an international path with significant experience in being the fulcrum in interdisciplinary projects within a network of more than 60 international scientists and 41 publications. I am strongly engaged in the open science movement with leading roles at institutional and international levels for enhancing open science practices and thus contributing to make open science the new normal. I am founder of the Open Science initiative [Peer Community In ( PCI) Animal Science](https://animsci.peercommunityin.org/). For more information about my research please visit [my web site](https://sites.google.com/site/rafaelmunoztamayo/).

Domaines de recherche


Publications

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Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano
mSystems, 2023, 8 (3), pp.1-23. ⟨10.1128/msystems.01027-22⟩
Article dans une revue hal-04131368v1
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Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere
Animal, 2023, 17, pp.100830. ⟨10.1016/j.animal.2023.100830⟩
Article dans une revue hal-04174171v1
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Disentangling the dynamics of energy allocation to develop a proxy for robustness of fattening pigs

Guillaume Lenoir , Loïc Flatres-Grall , Rafael Muñoz-Tamayo , Ingrid David , Nicolas C Friggens
Genetics Selection Evolution, 2023, 55 (1), pp.77. ⟨10.1186/s12711-023-00851-w⟩
Article dans une revue hal-04276378v1
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Animal board invited review: Quantification of resilience in farm animals

M. Taghipoor , M. Pastell , Olivier Martin , Hieu Nguyen-Ba , Jaap J. van Milgen
Animal, 2023, 17 (9), pp.100925. ⟨10.1016/j.animal.2023.100925⟩
Article dans une revue hal-04214047v1
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ASAS-NANP symposium: Mathematical Modeling in Animal Nutrition: The power of identifiability analysis for dynamic modeling in animal science:a practitioner approach

Rafael Muñoz-Tamayo , Luis O Tedeschi
Journal of Animal Science, 2023, 101, pp.1-13. ⟨10.1093/jas/skad320⟩
Article dans une revue hal-04302072v1
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Review: Towards the next-generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

R. Muñoz-Tamayo , M. Davoudkhani , I. Fakih , C.E. Robles-Rodriguez , F. Rubino
Animal, 2023, pp.100984. ⟨10.1016/j.animal.2023.100984⟩
Article dans une revue hal-04255485v1
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Predicting the dynamics of enteric methane emissions based on intake kinetic patterns in dairy cows fed diets containing either wheat or corn

Rafael Munoz Tamayo , B. Ruiz , Pierre Blavy , Sylvie Giger-Reverdin , Daniel Sauvant
Animal - Open Space, 2022, 1 (1), pp.100003. ⟨10.1016/j.anopes.2021.100003⟩
Article dans une revue hal-03561639v1
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Seven steps to enhance Open Science practices in animal science

Rafael Muñoz-Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause
PNAS Nexus, 2022, 1 (3), pp.1-6. ⟨10.1093/pnasnexus/pgac106⟩
Article dans une revue hal-03749515v1
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Dynamic data of body weight and feed intake in fattening pigs, and the determination of energetic allocation factors using a dynamic linear model

Guillaume Lenoir , K. Kashefifard , C. Chesnet , Loïc Flatres-Grall , Rafael Munoz Tamayo
Animal - Open Space, 2022, 1 (1), ⟨10.1016/j.anopes.2022.100014⟩
Article dans une revue hal-03747370v1
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Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Flatres-Grall Loïc , Rafael Munoz Tamayo , Nicolas C Friggens
Peer Community Journal, 2022, 2, pp.e9. ⟨10.24072/pcjournal.82⟩
Article dans une revue hal-03545140v1
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Rumen microbial genomics: from cells to genes (and back to cells)

Milka Popova , Ibrahim Fakih , Evelyne Forano , Anne Siegel , Rafael Muñoz-Tamayo
CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources, 2022, 2022, ⟨10.1079/cabireviews202217025⟩
Article dans une revue hal-03929845v1
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Dynamic data for determining the accuracy of four open-circuit respiration chambers designed to quantify methane emissions from goats

Ophelie Dhumez , J. Tessier , Maguy Eugène , A.I. Martín-García , Alexandra Eymard
Animal - Open Space, 2022, 1 (1), pp.100006. ⟨10.1016/j.anopes.2022.100006⟩
Article dans une revue hal-03594433v1
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Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation and methane production

Rafael Munoz Tamayo , Juana C Chagas , Mohammad Ramin , Sophie J Krizsan
Peer Community Journal, 2021, 1, pp.e7. ⟨10.24072/pcjournal.11⟩
Article dans une revue hal-03545126v1
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On parameter interpretability of phenomenological-based semiphysical models in biology

Laura Lema-Perez , Rafael Munoz Tamayo , Jose Garcia-Tirado , Hernan Alvarez
Informatics in Medicine Unlocked, 2019, 15, pp.100158. ⟨10.1016/j.imu.2019.02.002⟩
Article dans une revue hal-02192507v1
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A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J. Ramírez Agudelo , R. Dewhurst , G. Miller , T. Vernon
Animal, 2019, 13 (06), pp.1180-1187. ⟨10.1017/S1751731118002550⟩
Article dans une revue hal-02369429v1
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Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different—A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Jean-Pierre Morel
PLoS ONE, 2019, 14 (12), pp.e0226243. ⟨10.1371/journal.pone.0226243⟩
Article dans une revue hal-02473686v1
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Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach

Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier , Fany Blanc
Animal, 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩
Article dans une revue hal-02192515v1
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Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future

Sharon A. Huws , Christopher J. Creevey , Linda B. Oyama , Itzhak Mizrahi , Stuart E. Denman
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩
Article dans une revue hal-01890696v1
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Modeling and optimization of lipid accumulation by Yarrowia lipolytica from glucose under nitrogen depletion conditions

Carlos Robles Rodriguez , Rafael Munoz Tamayo , Carine Bideaux , Nathalie Gorret , Stéphane Guillouet
Biotechnology and Bioengineering, 2018, 115 (5), pp.1-15. ⟨10.1002/bit.26537⟩
Article dans une revue hal-01713779v1
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Review: to be or not to be an identifiable model. Is this a relevant question in animal science modelling?

Rafael Munoz Tamayo , Laurence Puillet , J. Daniel , Daniel Sauvant , Olivier Martin
Animal, 2018, 12 (04), pp.701 - 712. ⟨10.1017/S1751731117002774⟩
Article dans une revue hal-01526307v1
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Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota

Rafael Munoz Tamayo , Sylvie Giger-Reverdin , Daniel Sauvant
Animal Feed Science and Technology, 2016, 220, pp.1-21. ⟨10.1016/j.anifeedsci.2016.07.005⟩
Article dans une revue hal-01349548v1

Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205]

Caroline Baroukh , Rafael Munoz Tamayo , Olivier A. Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩
Article dans une revue hal-01410975v1

Adaptive control of light attenuation for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
Journal of Process Control, 2015, 30, pp.117-124. ⟨10.1016/j.jprocont.2015.03.010⟩
Article dans une revue hal-01163455v1

Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Olivier Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩
Article dans une revue hal-01163456v1

A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩
Article dans une revue hal-01163453v1
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Getting the most out of it: optimal experiments for parameter estimation of microalgae growth models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard
Journal of Process Control, 2014, 24 (6), pp.991-1001. ⟨10.1016/j.jprocont.2014.04.021⟩
Article dans une revue hal-00998525v1
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DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩
Article dans une revue hal-01123224v1
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Optimizing microalgal production in raceway systems

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
Biotechnology Progress, 2013, 29 (2), pp.543--552. ⟨10.1002/btpr.1699⟩
Article dans une revue hal-00850376v1

Modeling peptide formation during the hydrolysis of β-casein by Lactococcus lactis

Rafael Munoz Tamayo , Jolan de Groot , Peter A. Wierenga , Harry Gruppen , Marcel H. Zwietering
Process Biochemistry, 2012, 47 (1), pp.83-93. ⟨10.1016/j.procbio.2011.10.012⟩
Article dans une revue hal-02643666v1

Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Sylvia Duncan , Harry Flint
FEMS Microbiology Ecology, 2011, 76 (3), pp.615-624. ⟨10.1111/j.1574-6941.2011.01085.x⟩
Article dans une revue hal-00655932v1

Hydrolysis of β-casein by the cell-envelope-located PI-type protease of Lactococcus lactis: A modelling approach

Rafael Munoz Tamayo , Jolan de Groot , Edwin Bakx , Peter A. Wierenga , Harry Gruppen
International Dairy Journal, 2011, 21 (10), pp.755-762. ⟨10.1016/j.idairyj.2011.03.012⟩
Article dans une revue hal-02648605v1

Mathematical modelling of carbohydrate degradation by human colonic microbiota

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Doré , Marion Leclerc
Journal of Theoretical Biology, 2010, 266 (1), pp.189-20. ⟨10.1016/j.jtbi.2010.05.040⟩
Article dans une revue hal-00521148v1

Towards the human intestinal microbiota phylogenetic core

Julien J. Tap , Stanislas S. Mondot , Florence F. Levenez , Eric Pelletier , Christophe C. Caron
Environmental Microbiology, 2009, 11 (10), pp.2574-2584. ⟨10.1111/j.1462-2920.2009.01982.x⟩
Article dans une revue hal-02667864v1
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A dynamic mechanistic model of microbial fermentation and methane production in the cow rumen

Rafael Munoz Tamayo , Seppo Ahvenjärvi , Ali Reza Bayat , Ilma Tapio
ADSA Annual Meeting, ADSA, Jun 2023, Ottawa, Canada
Communication dans un congrès hal-04181482v1

A dynamic in silico model of rumen microbial fermentation and methane production

Rafael Munoz Tamayo , S. Ahvenjärvi , A.R. Bayat , I. Tapio
Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.325
Communication dans un congrès hal-04199208v1

Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere
International Symposium on Energy and Protein Metabolism and Nutrition (ISEP 2022), EAAP, Sep 2022, Granada, Spain. pp.100830
Communication dans un congrès hal-04174207v1
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Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigs

Guillaume Lenoir , Rafael Munoz Tamayo , Loïc Flatres-Grall , Ingrid David , Nicolas N.C. Friggens
WCGALP 2022, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès hal-03725117v1
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The power of theoretical and practical identifiability analysis for modeling (micro-) biological processes

Rafael Munoz Tamayo
ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33
Communication dans un congrès hal-03748944v1

Peer Community In Animal Science: A free publication model for transparent and open science

Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , M. Hess , Diego Morgavi
2022 ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma City, United States. pp.80-81
Communication dans un congrès hal-04138498v1
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The shades of gray in model building and its opportunities for precision livestock farming

Rafael Munoz Tamayo
72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland
Communication dans un congrès hal-03347173v1

Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Fakih Ibrahim , Jeanne Got , Anne Siegel , Evelyne Forano , Rafael Munoz Tamayo
2021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Communication dans un congrès hal-03402155v1
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Assessing the predictive capabilities of a dynamic mechanistic model of in vitro rumen fermentation and methane production

Rafael Muñoz-Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin
9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2019, Ubatuba, Brazil. pp.320, ⟨10.1017/S2040470019000025⟩
Communication dans un congrès hal-04485501v1

Combining a process-based model of rumen fermentation with methane production data from respiration chambers

Helen Kettle , Rafael Munoz Tamayo , R.J. Dewhurst
75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩
Communication dans un congrès hal-02193900v1

How complex does a mathematical model need to be to describe the dynamics of methane production in cattle?

Rafael Munoz Tamayo , Helen Kettle , Baptiste Ruiz , Richard Williams , Peter J. Moate
MODNUT, 2019
Communication dans un congrès hal-02790648v1

Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota

Rafael Munoz Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin
61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France
Communication dans un congrès hal-02193905v1

Multivariate and network analysis identified microbial biomarkers linked to methane emission

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura M. Zingaretti , Milka Popova , Núria Mach
69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia
Communication dans un congrès hal-02881487v1

Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach

Rafael Munoz Tamayo , Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier
Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès hal-01840967v1

Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean-Pierre Morel
Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès hal-01840971v1

Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura Zingaretti , Milka Popova , Núria Mach
Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom
Communication dans un congrès hal-02738326v1

Tous les modèles doivent-ils être identifiables ?

Rafael Munoz Tamayo , Pierre Blavy , Laurence Puillet , Olivier Martin , Jean-Baptiste Daniel
Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1
Communication dans un congrès hal-01840968v1

Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
Communication dans un congrès hal-01603450v1
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation

Caroline Baroukh , Olivier Bernard , Jean-Philippe Steyer , Rafael Munoz Tamayo , Benoit Chachuat
BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
Communication dans un congrès hal-01601441v1

Optimization of lipid production by oleaginous yeast in continuous culture

Rafael Munoz Tamayo , Cesar Arturo Aceves-Lara , Carine Bideaux
19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa
Communication dans un congrès hal-01268860v1
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Driving Species Competition in a Light-limited Chemostat

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France
Communication dans un congrès hal-00852258v1
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Driving microalgal production in raceway systems to near optimal productivities.

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
European Control Conference (ECC13), Jul 2013, Zurich, Switzerland
Communication dans un congrès hal-00852259v1
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A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India
Communication dans un congrès hal-00856042v2
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Adaptive control for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
Computer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India
Communication dans un congrès hal-00921486v1

A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Communication dans un congrès hal-01601779v1

A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France
Communication dans un congrès hal-02747879v1
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Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard
International Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India
Communication dans un congrès hal-00856749v1

IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter
15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩
Communication dans un congrès hal-01204242v1

Modelling and identification of in vitro homoacetogenesis by human-colon bacteria

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter
16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France
Communication dans un congrès hal-01204248v1

Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain

Rafael Munoz Tamayo , Jean-Philippe Steyer , Béatrice Laroche , Marion Leclerc
11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p
Communication dans un congrès hal-01204246v1

Control of a bioreactor using feedback linearization

Fabiola Angulo , Rafael Munoz Tamayo , Gerard Olivar
2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩
Communication dans un congrès hal-02755197v1

Peer Community In Animal Science: A free publication model for transparent and open science

Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , M. Hess , Diego Morgavi
10. Workshop on modelling nutrient digestion and utilization in farm animals (Modnut), Sep 2022, Alghero, Italy. Animal - science proceedings, 13 (4), pp.603, 2022, Proceedings of the 10th Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT). ⟨10.1016/j.anscip.2022.07.470⟩
Poster de conférence hal-03872402v1

Rumen methanogens exhibit specific energetic and growth dynamics: a modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean Pierre Morel
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Poster de conférence hal-02734246v1

Animal modelling meets identifiability: a practioner perspective

Pierre Blavy , Laurence Puillet , Jean-Baptiste Daniel , Daniel Sauvant , Olivier Martin
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Poster de conférence hal-02738243v1

Predicting ruminal pH dynamics by linking microbial metabolism and the host: a theoretical study

Rafael Munoz Tamayo , Sylvie Giger-Reverdin , Daniel Sauvant
10. INRA-Rowett symposium on gut microbiology “Twenty years and counting”, Jun 2016, Clermont-Ferrand, France. 2016
Poster de conférence hal-01351516v1

Breve elogio a la lentitud en ciencia

Rafael Munoz Tamayo
Ciencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2
Chapitre d'ouvrage hal-02797416v1
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Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani , Francesco Rubino , Christopher J Creevey , Seppo Ahvenjärvi , Ali R Bayat
2023
Pré-publication, Document de travail hal-04253680v1
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Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacteriumFibrobacter succinogenesS85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano
2022
Pré-publication, Document de travail hal-03871397v1
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Disentangling the dynamics of energy allocation to provide a proxy of robustness in fattening pigs

Guillaume Lenoir , Loïc Flatres-Grall , Rafael Muñoz-Tamayo , Ingrid David , Nicolas C Friggens
2022
Pré-publication, Document de travail hal-03871410v1
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Intake time as potential predictor of methane emissions from cattle.

John F. Ramirez-Agudelo , Carlos S. Escobar-Restrepo , Rafael Munoz Tamayo , Sandra L. Posada-Ochoa , Ricardo Rosero-Noguera
2022
Pré-publication, Document de travail hal-03604356v1
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The power of identifiability analysis for dynamic modeling in animal science: A practitioner approach

Rafael Munoz Tamayo , Luis O. Tedeschi
2022
Pré-publication, Document de travail hal-03878727v1
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Seven steps to enhance open science practices in animal science

Rafael Munoz Tamayo , Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , E Tobias Krause
2022
Pré-publication, Document de travail hal-03544902v2
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Towards the next generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

Rafael Munoz Tamayo , Mohsen Davoudkhani , Ibrahim Fakih , C.E. Robles Rodriguez , Francesco Rubino
2022
Pré-publication, Document de travail hal-03871472v1
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Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Loïc Flatres-Grall , Rafael Munoz Tamayo , Nicolas C Friggens
2021
Pré-publication, Document de travail hal-03346812v1
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A filtering algorithm for accurate determination of feed intake dynamics

P Blavy , O Dhumez , B L Nielsen , Rafael Munoz Tamayo , Nicolas N.C. Friggens
2020
Pré-publication, Document de travail hal-02959928v1

Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation

Rafael Munoz Tamayo , Juana Chagas , Mohammad Ramin , Sophie J. Krizsan
2020
Pré-publication, Document de travail hal-03024873v1
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A brief tribute to slowness in science *

Rafael Munoz Tamayo
2019
Pré-publication, Document de travail hal-02369434v1
Image document

Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different -A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Gérard Fonty
2018
Pré-publication, Document de travail hal-02369430v1
Image document

A brief tribute to slowness in science

Rafael Munoz Tamayo
2018
Pré-publication, Document de travail hal-02786714v1
Image document

A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J F Ramírez Agudelo , R. Dewhurst , G Miller , T Vernon
2018
Pré-publication, Document de travail hal-02369431v1
Image document

On Parameter Interpretability of Phenomenological-Based Semiphysical Models

Laura Lema Perez , Rafael Munoz Tamayo , Jose Fernando Garcia Tirado , Hernan Alvarez
2018
Pré-publication, Document de travail hal-02788220v1
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Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach

Manuel Revilla , Nicolas N.C. Friggens , Laurent Broudiscou , G. Lemonnier , F. Blanc
2018
Pré-publication, Document de travail hal-02369432v1
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A modelling odyssey in the tree of life

Rafael Munoz Tamayo
Modeling and Simulation. Université Paris Sud (Paris 11), 2019
HDR tel-02183063v1