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Using a multiomics approach to unravel a septic shock specific signature in skeletal muscle

Baptiste Duceau , Michael Blatzer , Jean Bardon , Thibault Chaze , Quentin Giai Gianetto , et al.
Scientific Reports, 2022, 12 (1), pp.18776. ⟨10.1038/s41598-022-23544-8⟩
Article dans une revue hal-03996889v1
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Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments

Quentin Giai Gianetto , Florence Combes , Claire Ramus , Christophe Bruley , Yohann Coute , et al.
Proteomics, 2016, 16 (1), pp.29-32. ⟨10.1002/pmic.201500189⟩
Article dans une revue istex hal-02191440v1
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In-Depth Characterization of the Clostridioides difficile Phosphoproteome to Identify Ser/Thr Kinase Substrates

Transito Garcia-Garcia , Thibaut Douché , Quentin Giai Gianetto , Sandrine Poncet , Nesrine El Omrani , et al.
Molecular and Cellular Proteomics, 2022, 21, ⟨10.1016/j.mcpro.2022.100428⟩
Article dans une revue pasteur-04093631v1
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Using ProteoCombiner to integrate bottom-up and top-down proteomics data to improve proteoform identification

Diogo Borges Lima , Mathieu Dupré , Magalie Duchateau , Quentin Giai Gianetto , Martial Jean-Pierre Rey , et al.
2021
Pré-publication, Document de travail pasteur-03243560v1
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Amphiregulin mediates non-cell-autonomous effect of senescence on reprogramming

Mathieu von Joest , Cheng Chen , Thibaut Douché , Jeremy Chantrel , Aurélie Chiche , et al.
Cell Reports, 2022, 40 (2), pp.111074. ⟨10.1016/j.celrep.2022.111074⟩
Article dans une revue pasteur-04093575v1
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Proteomic Analysis of Humoral Immune Components in Bronchoalveolar Lavage of Patients Infected or Colonized by Aspergillus fumigatus

Sarah Dellière , Magalie Duchateau , Sarah Sze Wah Wong , Quentin Giai Gianetto , Hélène Guegan , et al.
Frontiers in Immunology, 2021, 12, pp.677798. ⟨10.3389/fimmu.2021.677798⟩
Article dans une revue pasteur-03243511v1
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Differentiation-dependent susceptibility of human muscle cells to Zika virus infection

Vincent Legros , Patricia Jeannin , Julien Burlaud-Gaillard , Thibault Chaze , Quentin Giai Gianetto , et al.
PLoS Neglected Tropical Diseases, 2020, 14 (8), pp.e0008282. ⟨10.1371/journal.pntd.0008282⟩
Article dans une revue hal-03184236v1
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A peptide-level multiple imputation strategy accounting for the different natures of missing values in proteomics data

Q. Giai Gianetto , S. Wieczorek , Y. Couté , T. Burger
2021
Pré-publication, Document de travail pasteur-03243577v1
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Mitochondrial Fission Process 1 controls inner membrane integrity and protects against heart failure

Erminia Donnarumma , Michael Kohlhaas , Elodie Vimont , Etienne Kornobis , Thibault Chaze , et al.
Nature Communications, 2022, 13 (1), pp.6634. ⟨10.1038/s41467-022-34316-3⟩
Article dans une revue pasteur-03853858v1
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Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analyses

Samuel Wieczorek , Quentin Giai Gianetto , Thomas Burger
Journal of Proteomics, 2019, 207, pp.103441. ⟨10.1016/j.jprot.2019.103441⟩
Article dans une revue hal-02267178v1
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CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies

Yanouk Epelboin , Lanjiao Wang , Quentin Giai Gianetto , Valérie Choumet , Pascal Gaborit , et al.
PLoS ONE, 2021, 16 (1), pp.e0243992. ⟨10.1371/journal.pone.0243992⟩
Article dans une revue pasteur-03184205v1
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Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile

Transito Garcia-Garcia , Sandrine Poncet , Elodie Cuenot , Thibaut Douché , Quentin Giai Gianetto , et al.
mBio, 2021, 12 (3), pp.e00519-21. ⟨10.1128/mBio.00519-21⟩
Article dans une revue pasteur-03243540v1
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Infection Reveals a Modification of SIRT2 Critical for Chromatin Association

Jorge Vitório Pereira , Christine Chevalier , Thibault Chaze , Quentin Giai Gianetto , Francis Impens , et al.
Cell Reports, 2018, 23 (4), pp.1124 - 1137. ⟨10.1016/j.celrep.2018.03.116⟩
Article dans une revue pasteur-01857244v1
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Mitochondrial fission process 1 (MTFP1) controls bioenergetic efficiency and prevents inflammatory cardiomyopathy and heart failure in mice

Erminia Donnarumma , Michael Kohlhaas , Elodie Vimont , Etienne Kornobis , Thibault Chaze , et al.
2022
Pré-publication, Document de travail pasteur-03853920v1
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Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype

Soraya Matczak , Valérie Bouchez , Pauline Leroux , Thibaut Douché , Nils Collinet , et al.
Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩
Article dans une revue pasteur-04109470v1
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A balance between actin and Eps8/IRSp53 utilization in branched versus linear actin networks determines tunneling nanotube formation

J. Michael Henderson , Nina Ljubojevic , Thibault Chaze , Daryl Castaneda , Aude Battistella , et al.
2022
Pré-publication, Document de travail hal-03871048v1

Testing instantaneous causality in presence of non constant unconditional variance

Quentin Giai Gianetto , Hamdi Raïssi
Journal of Business and Economic Statistics, 2015, 33 (1), pp.46-53. ⟨10.1080/07350015.2014.920614⟩
Article dans une revue hal-00772479v1
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Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche

Virginie Stévenin , Yuen-Yan Chang , Yoann Le Toquin , Magalie Duchateau , Quentin Giai Gianetto , et al.
Cell Reports, 2019, 29 (12), pp.3958-3973.e7. ⟨10.1016/j.celrep.2019.11.049⟩
Article dans une revue pasteur-02557367v1
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MSclassifR: an R package for supervised classification of mass spectra with machine learning methods

Alexandre Godmer , Yahia Benzerara , Emmanuelle Varon , Nicolas Veziris , Karen Druart , et al.
2023
Pré-publication, Document de travail pasteur-04093599v2
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The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis

Cyril Addi , Adrien Presle , Stéphane Frémont , Frédérique Cuvelier , Murielle Rocancourt , et al.
Nature Communications, 2020, 11 (1), pp.1941. ⟨10.1038/s41467-020-15205-z⟩
Article dans une revue pasteur-02557366v1

Local real-time prediction of turning points in unobserved time-varying risk premia

Quentin Giai Gianetto , Jean-Marc Le Caillec , Erwan Marrec
6th International Finance Conference, Mar 2011, Hammamet, Tunisie
Communication dans un congrès hal-00609292v1
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Single locus phosphoproteomics reveals phosphorylation of RPA-1 is required for generation of single-strand DNA following a break at a subtelomeric locus

Emilia Mclaughlin , Annick Dujeancourt-Henry , Thibault Chaze , Quentin Giai Gianetto , Mariette Matondo , et al.
2022
Pré-publication, Document de travail pasteur-04093539v1
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ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment

Diogo Lima , Mathieu Dupré , Magalie Duchateau , Quentin Giai Gianetto , Martial Jean-Pierre Rey , et al.
Bioinformatics, 2020, pp.btaa958. ⟨10.1093/bioinformatics/btaa958⟩
Article dans une revue pasteur-03014113v1
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Interaction network among de novo purine nucleotide biosynthesis enzymes in Escherichia coli

Antoine Gedeon , Gouzel Karimova , Nour Ayoub , Julien Dairou , Quentin Giai Gianetto , et al.
FEBS Journal, 2023, ⟨10.1111/febs.16746⟩
Article dans une revue pasteur-04092979v1

Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model

Silvia Castellanos-Castro , Arturo Aguilar-Rojas , Mariette I Matondo , Quentin Gian Gianetto , Hugo Varet , et al.
Eukaryome Impact on Human Intestine Homeostasis and Mucosal Immunology, Springer International Publishing, pp.225-238, 2020, ⟨10.1007/978-3-030-44826-4_16⟩
Chapitre d'ouvrage pasteur-03243649v1
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Impact of the gut microbiota on the m 6 A epitranscriptome of mouse cecum and liver

Sabrina Jabs , Anne Biton , Christophe Bécavin , Marie-Anne Nahori , Amine Ghozlane , et al.
Nature Communications, 2020, 11, ⟨10.1038/s41467-020-15126-x⟩
Article dans une revue hal-02573165v1
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Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape

Yuen-Yan Chang , Virginie Stévenin , Magalie Duchateau , Quentin Giai Gianetto , Veronique Hourdel , et al.
PLoS Pathogens, 2020, 16 (8), pp.e1008822. ⟨10.1371/journal.ppat.1008822⟩
Article dans une revue pasteur-03070694v1

CotL, a new morphogenetic spore coat protein of Clostridium difficile

Carolina Alves Feliciano , Thibaut Douche , Quentin Giai Gianetto , Mariette I Matondo , Isabelle Martin-Verstraete , et al.
Environmental Microbiology, 2019, 21 (3), pp.984-1003. ⟨10.1111/1462-2920.14505⟩
Article dans une revue pasteur-02331056v1
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Statistical analysis of post-translational modifications quantified by label-free proteomics across multiple biological conditions with R: illustration from SARS-CoV-2 infected cells

Giai Gianetto Quentin
Statistical Analysis of Proteomic Data, 2023
Chapitre d'ouvrage pasteur-03243433v2
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Reducing neutrophil exposure to oxygen allows their basal state maintenance

Louise Injarabian , Jurate Skerniskyte , Quentin Giai Gianetto , Véronique Witko-Sarsat , Benoit Marteyn
Immunology and Cell Biology, 2021, 99 (7), pp.782-789. ⟨10.1111/imcb.12458⟩
Article dans une revue pasteur-03243457v1