Skip to Main content

Researcher identifiers

Domains

Keywords

Co-authors

Journal names

Number of documents

142

Phil Oger @ HAL


 

Education

2007 Habilitation (University of Lyon)

1995 PhD summa cum laude in Plant Pathology (Paris University X1- Orsay) 1991 MS Plant Pathology (Paris University X1- Orsay)
1991 Engineer degree in Agronomy (National Institute ofr Agronomy, Paris)

Professional experience

 

2016-present    CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon

2000-2015        CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon 

1999-2000        Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette 

1996-1999        Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA) 

Teaching

2014 -              2nd and 3rd year BS at INSA de Lyon and ENS de Lyon

2005 - 2014     4th year BS and MS level at ENS de Lyon and University of Lyon 

1992 - 1995     1st year BS at University of Paris XI-Orsay 

Teaching

2014 -
2005 - 2014 1992 - 1995

CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA)

2nd and 3rd year BS at INSA de Lyon and ENS de Lyon
4th year BS and MS level at ENS de Lyon and University of Lyon 1st year BS at University of Paris XI-Orsay

Research interests

Research in my group aims at deciphering from the atomic to the genetic level the behavior and adaptation of Archaea in response to environmental stresses. Our aim is to explore the limits of life in the deep-biosphere, with an emphasis on the adaptation to hydrostatic pressure, temperature and salinity variations in deep-sea hydrothermal vents. Over the years we have developped the two widely accepted hypethermophilic archaea, e.g. Thermococcus barophilus and Pyrococcus yayanosii, as genetic models for the study of high-hydrostatic pressure adaptation in deep-sea hydrothermal vents. Our approaches are multi- and trans-disciplinary since we aim at understanding the physics behind the physiologic adaptation of cells. To this avail we use techniques ranging from spectral physics (Xray and Neutron diffraction and diffusion) to meta-omics (RNASeq and Proteomics, in order to track the genetic imprint of these adaptations from the cell level to the molecule.

This combination of approaches has led to two major scientific discoveries over the last two years. First, we have described the first atomistic model of of high hydrostatic pressure adaptation (Martinez Sci Rep 2016; Cario Sci Rep 2016) and described a novel membrane ultrstructure as a new adaptation strategy to high hydrostatic pressure and temperature in hyperthermohpiv Archaea (Cario Front Microbiol 2105). 


Journal articles119 documents

  • Stephane Uroz, Laura Picard, Marie‐pierre Turpault, Lucas Auer, Jean Armengaud, et al.. Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral. Environmental Microbiology, Wiley-Blackwell, In press, ⟨10.1111/1462-2920.15159⟩. ⟨hal-02902180⟩
  • Likui Zhang, Donghao Jiang, Haoqiang Shi, Mai Wu, Qi Gan, et al.. Characterization and application of a family B DNA polymerase from the hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans. International Journal of Biological Macromolecules, Elsevier, 2020, 156, pp.217-224. ⟨10.1016/j.ijbiomac.2020.03.204⟩. ⟨hal-02526997⟩
  • Qi Gan, Mengfan He, Haoqiang Shi, Phil Oger, Zhihui Yang, et al.. Characterization of a Family IV uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. International Journal of Biological Macromolecules, Elsevier, 2020, 146, pp.475-481. ⟨10.1016/j.ijbiomac.2019.12.202⟩. ⟨hal-02441935⟩
  • Marta Salvador-Castell, Bruno Demé, Philippe Oger, Judith Peters. Structural Characterization of an Archaeal Lipid Bilayer as a Function of Hydration and Temperature. International Journal of Molecular Sciences, MDPI, 2020, 21 (5), pp.1816. ⟨10.3390/ijms21051816⟩. ⟨hal-02508365⟩
  • Marta Salvador-Castell, Bruno Demé, Phil Oger, Judith Peters. Lipid phase separation induced by the apolar polyisoprenoid squalane demonstrates its role in membrane domain formation in archaeal membranes. Langmuir, American Chemical Society, In press, ⟨10.1021/acs.langmuir.0c00901⟩. ⟨hal-02862864⟩
  • Josephine Loricco, Marta Salvador-Castell, Bruno Demé, Judith Peters, Philippe Oger. Apolar Polyisoprenoids Located in the Midplane of the Bilayer Regulate the Response of an Archaeal-like Membrane to High Temperature and Pressure. Frontiers in Chemistry, Frontiers, 2020. ⟨hal-02987030⟩
  • Marta Salvador-Castell, Nicholas Brooks, Judith Peters, P. Oger. Induction of non-lamellar phases in archaeal lipids at high temperature and high hydrostatic pressure by apolar polyisoprenoids. Biochimica et Biophysica Acta:Biomembranes, Elsevier, 2020, 1862 (2), pp.183130. ⟨10.1016/j.bbamem.2019.183130⟩. ⟨hal-02364592⟩
  • Josephine Loricco, Marta Salvador-Castell, Bruno Demé, Judith Peters, Philippe Oger. Apolar Polyisoprenoids Located in the Midplane of the Bilayer Regulate the Response of an Archaeal-Like Membrane to High Temperature and Pressure. Frontiers in Chemistry | www.frontiersin.org 1, 2020, 8, ⟨10.3389/fchem.2020.594039⟩. ⟨hal-03000614⟩
  • Maxime Tourte, Philippe Schaeffer, Vincent Grossi, Phil Oger. Functionalized Membrane Domains: An Ancestral Feature of Archaea?. Frontiers in Microbiology, Frontiers Media, 2020, 11, pp.526. ⟨10.3389/fmicb.2020.00526⟩. ⟨hal-02553764⟩
  • Likui Zhang, Donghao Jiang, Mai Wu, Zhihui Yang, Philippe Oger. New Insights Into DNA Repair Revealed by NucS Endonucleases From Hyperthermophilic Archaea. Frontiers in Microbiology, Frontiers Media, 2020, 11, ⟨10.3389/fmicb.2020.01263⟩. ⟨hal-02887791⟩
  • Laura Picard, Philippe Oger, Marie-Pierre Turpault, Stephane Uroz. Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain. Microbiology Resource Announcements, American Society for Microbiology, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩. ⟨hal-02939115⟩
  • Likui Zhang, Haoqiang Shi, Qi Gan, Yuxiao Wang, Mai Wu, et al.. An alternative pathway for repair of deaminated bases in DNA triggered by archaeal NucS endonuclease. DNA Repair, Elsevier, 2020, pp.102734. ⟨10.1016/j.dnarep.2019.102734⟩. ⟨hal-02334467⟩
  • Maxime Tourte, Vanessa Kuentz, Philippe Schaeffer, Vincent Grossi, Anaïs Cario, et al.. Novel intact polar and core lipid compositions in the Pyrococcus model species, P. furiosus and P. yayanosii, reveal the largest lipid diversity amongst Thermococcales. Biomolecules, MDPI, 2020, 10 (6), pp.830. ⟨10.3390/biom10060830⟩. ⟨hal-02861881⟩
  • Laura Picard, Marie-Pierre Turpault, P. Oger, Stephane Uroz. Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1). FEMS Microbiology Ecology, Wiley-Blackwell, 2020. ⟨hal-03000681⟩
  • Stéphane Uroz, Pierre-Emmanuel Courty, P. Oger. Plant Symbionts Are Engineers of the Plant-Associated Microbiome. Trends in Plant Science, Elsevier, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩. ⟨hal-02334474⟩
  • Haoqiang Shi, Yanchao Huang, Qi Gan, Mianwen Rui, Hongxun Chen, et al.. Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. Applied Microbiology and Biotechnology, Springer Verlag, 2019, ⟨10.1007/s00253-019-09736-9⟩. ⟨hal-02091415⟩
  • Likui Zhang, Yuting Li, Haoqiang Shi, Dai Zhang, Zhihui Yang, et al.. Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans. Applied Microbiology and Biotechnology, Springer Verlag, 2019, ⟨10.1007/s00253-019-10031-w⟩. ⟨hal-02283293⟩
  • Marta Salvador-Castell, Maksym Golub, Nicolas Martinez, Jacques Ollivier, Judith Peters, et al.. The first study on the impact of osmolytes in whole cells of high temperature-adapted microorganisms. Soft Matter, Royal Society of Chemistry, 2019, 15 (41), pp.8381-8391. ⟨10.1039/c9sm01196j⟩. ⟨hal-02318499⟩
  • Loreto Misuraca, Bruno Demé, Judith Peters, Phil M. Oger, P. Oger. Protomembranes at the origin of life. European Biophysics Journal, Springer Verlag (Germany), 2019. ⟨hal-02334473⟩
  • S. Uroz, Phil M. Oger. Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]. Systematic and Applied Microbiology, Elsevier, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩. ⟨hal-02122345⟩
  • Haoqiang Shi, Qi Gan, Donghao Jiang, Yuqi Wu, Youcheng Yin, et al.. Biochemical characterization and mutational studies of the thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. International Journal of Biological Macromolecules, Elsevier, 2019, ⟨10.1016/j.ijbiomac.2019.05.073⟩. ⟨hal-02130096⟩
  • Marta Salvador-Castell, Maxime Tourte, Philippe Oger. In Search for the Membrane Regulators of Archaea. International Journal of Molecular Sciences, MDPI, 2019, 20 (18), pp.4434. ⟨10.3390/ijms20184434⟩. ⟨hal-02283370⟩
  • Y. Wang, L. Zhang, X. Zhu, Y. Li, H. Shi, et al.. Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. International Journal of Biological Macromolecules, Elsevier, 2018, 117, pp.17-24. ⟨10.1016/j.ijbiomac.2018.05.155⟩. ⟨hal-02001372⟩
  • P. M. Oger. Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea. Genome Announcements, American Society for Microbiology, 2018, 6 (8). ⟨hal-02001367⟩
  • M. Golub, N. Martinez, G. Michoud, J. Ollivier, M. Jebbar, et al.. The Effect of Crowding on Protein Stability, Rigidity, and High Pressure Sensitivity in Whole Cells. Langmuir, American Chemical Society, 2018, 34 (35), pp.10419-10425. ⟨hal-02001365⟩
  • F. Lormieres, P. M. Oger. Epsilonproteobacteria dominate bacterial diversity at a natural tar seep. Comptes Rendus Biologies, Elsevier Masson, 2017, 340 (4), pp.238-243. ⟨hal-02001356⟩
  • Jean-Loup Cadiou, Sylvain Pichat, Victor P. Bondanese, Alexandre Soulard, Toshiyuki Fujii, et al.. Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells. Scientific Reports, Nature Publishing Group, 2017, 7, ⟨10.1038/srep44533⟩. ⟨hal-01632761⟩
  • Phil M. Oger. Coping with the pressure: Microbial adaptation to high hydrostatic pressure in deep sea hydrothermal vents. Journal of Physics: Conference Series, IOP Publishing, 2017, 950, pp.032016. ⟨10.1088/1742-6596/950/3/032016⟩. ⟨hal-02122369⟩
  • Nicolas Reina, Sophie Putman, Romain Desmarchelier, El Hadi Sari Ali, Philippe Chiron, et al.. Can a target zone safer than Lewinnek's safe zone be defined to prevent instability of total hip arthroplasties? Case-control study of 56 dislocated THA and 93 matched controls. Orthopaedics and Traumatology - Surgery and Research, Elsevier, 2017, 103 (5), pp. 657-661. ⟨10.1016/j.otsr.2017.05.015⟩. ⟨hal-01587112⟩
  • Stéphane Uroz, P. Oger. Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.. Systematic and Applied Microbiology, Elsevier, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩. ⟨hal-01644024⟩
  • P. M. Oger, N. Callac, C. Oger-Desfeux, S. Hughes, B. Gillet, et al.. Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin. Genome Announcements, American Society for Microbiology, 2017, 5 (7). ⟨hal-02001357⟩
  • E. Lelièvre-Berna, B. Demé, J. Gonthier, J-P. Gonzales, J. Maurice, et al.. 700 MPa sample stick for studying liquid samples or solid-gas reactions down to 1.8 K and up to 550 K. Journal of Neutron Research, IOS Press, 2017, 19 (1/2), pp.77-84. ⟨hal-02001352⟩
  • F. Albarede, P. Telouk, V. Balter, V. P. Bondanese, E. Albalat, et al.. Medical applications of Cu, Zn, and S isotope effects. Metallomics, Royal Society of Chemistry, 2016, 8 (10), pp.1056-1070. ⟨10.1039/c5mt00316d⟩. ⟨hal-02001326⟩
  • C. Dalmasso, P. Oger, D. Courtine, M. Georges, K. Takai, et al.. Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures. Genome Announcements, American Society for Microbiology, 2016, 4 (4). ⟨hal-02001334⟩
  • C. Dalmasso, P. Oger, D. Courtine, M. Georges, K. Takai, et al.. Erratum for Dalmasso et al., Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures. Genome Announcements, American Society for Microbiology, 2016, 4 (5). ⟨hal-02001333⟩
  • Victor Bondanese, Aline Lamboux, Mélanie Simon, Jérôme Lafont, Emmanuelle Albalat, et al.. Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner. Metallomics, Royal Society of Chemistry, 2016, 8 (11), pp.1177-1184. ⟨10.1039/c6mt00102e⟩. ⟨hal-02132068⟩
  • A. Cario, M. Jebbar, A. Thiel, N. Kervarec, P. M. Oger. Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus. Scientific Reports, Nature Publishing Group, 2016, 6, pp.29483. ⟨10.1038/srep29483⟩. ⟨hal-02001331⟩
  • S. Uroz, P. Oger, E. Tisserand, A. Cebron, M. -P. Turpault, et al.. Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩. ⟨hal-01579579⟩
  • R. Bosmans, P. Oger, P. Ponel. Altella emilieae Lissner, 2016 (Araneae: Dictynidae) is a Junior Synonym of Chaerea maritimus Simon, 1884 and a Widespread Mediterranean Halophilous Species. Arachnology, 2016. ⟨hal-01473812⟩
  • N. Callac, P. Oger, F. Lesongeur, J. E. Rattray, P. Vannier, et al.. Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2016, 66 (8), pp.3142-9. ⟨hal-02001330⟩
  • P. Oger, T. G. Sokolova, D. A. Kozhevnikova, E. A. Taranov, P. Vannier, et al.. Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate. Genome Announcements, American Society for Microbiology, 2016, 4 (1), ⟨10.1128/genomeA.01534-15⟩. ⟨hal-02001341⟩
  • Cécile Dalmasso, Philippe Oger, Gwendoline Selva, Damien Courtine, Stéphane L’haridon, et al.. Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise. Systematic and Applied Microbiology, Elsevier, 2016, 39 (7), pp.440-444. ⟨10.1016/j.syapm.2016.08.003⟩. ⟨hal-02636723⟩
  • C. Dalmasso, P. Oger, G. Selva, D. Courtine, S. l'Haridon, et al.. Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise. Systematic and Applied Microbiology, Elsevier, 2016, 39 (7), pp.440-444. ⟨hal-02001335⟩
  • Natalia Guschinskaya, Romain Brunel, Maxime Tourte, Gina L. Lipscomb, Michael W. W. Adams, et al.. Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation. Scientific Reports, Nature Publishing Group, 2016, 6, pp.36711. ⟨10.1038/srep36711⟩. ⟨hal-01917847⟩
  • Nicolas Martinez, G. Michoud, A. Cario, J. Ollivier, Bruno Franzetti, et al.. High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes. Scientific Reports, Nature Publishing Group, 2016, 6, ⟨10.1038/srep32816⟩. ⟨hal-01427793⟩
  • Pauline Vannier, Grégoire Michoud, Phil M. Oger, Viggó þór Marteinsson, Mohamed Jebbar. Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions. Research in Microbiology, Elsevier, 2015, 166 (9), pp.717-725. ⟨10.1016/j.resmic.2015.07.006⟩. ⟨hal-02122706⟩
  • Anaïs Cario, Florence Lormières, Xiao Xiang, Phil M. Oger. High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus. Research in Microbiology, Elsevier, 2015, 166 (9), pp.710-716. ⟨10.1016/j.resmic.2015.07.004⟩. ⟨hal-02122717⟩
  • Anaïs Cario, Alex Mizgier, Axel Thiel, Mohamed Jebbar, Phil M. Oger. Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus. Biochimie, Elsevier, 2015, 118, pp.286-293. ⟨10.1016/j.biochi.2015.05.011⟩. ⟨hal-02122725⟩
  • Stephane Uroz, Phil Oger. Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability. Genome Announcements, American Society for Microbiology, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩. ⟨hal-02916120⟩
  • J. Braschi, P. Ponel, E. Krebs, Hervé Jourdan, A. Passetti, et al.. Eradications simultanées du rat noir (Rattus rattus) et des griffes de sorcière (Carpobrotus spp.) sur l'île de Bagaud (parc national de Port-Cros, Provence, France) : résultats préliminaires des conséquences sur les communautés d'arthropodes. Revue d'Ecologie, Terre et Vie, Société nationale de protection de la nature, 2015, 70, pp.91--98. ⟨hal-01452461⟩
  • Gilles Dromart, Charlotte Mesle Margaux; Periot, Philippe Oger. Methanogenic microbial community of the Eastern Paris Basin: Potential for energy production from organic-rich shales . International Journal of Coal Geology, Elsevier, 2015, 149, pp.67-76. ⟨10.1016/j.coal.2015.07.002⟩. ⟨hal-01360887⟩
  • Stéphane Uroz, Phil Oger. Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability. Genome Announcements, American Society for Microbiology, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩. ⟨hal-01577943⟩
  • Anaïs Cario, Vincent Grossi, Philippe Schaeffer, Philippe M. Oger. Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus. Frontiers in Microbiology, Frontiers Media, 2015, 6, pp.1152. ⟨10.3389/fmicb.2015.01152⟩. ⟨hal-01366758⟩
  • Margaux Meslé, Gilles Dromart, Frank Haeseler, Philippe Oger. Classes of organic molecules targeted by a methanogenic microbial consortium grown on sedimentary rocks of various maturities. Frontiers in Microbiology, Frontiers Media, 2015, 6, ⟨10.3389/fmicb.2015.00589⟩. ⟨hal-01256322⟩
  • Mohamed Jebbar, Bruno Franzetti, Eric Girard, Philippe Oger. Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.. Extremophiles, Springer Verlag, 2015, 19 (4), pp.721-40. ⟨hal-01199266⟩
  • Phil M. Oger, Anaïs Cario. La vie sous pression des microorganismes piézophiles. Biologie Aujourd'hui, EDP sciences, 2014, 208 (3), pp.193-206. ⟨10.1051/jbio/2014023⟩. ⟨hal-02122751⟩
  • Judith Peters, Nicolas Martinez, Grégoire Michoud, Anaïs Cario, Bruno Franzetti, et al.. Deep sea microbes probed by incoherent neutron scattering under high hydrostatic pressure.. Zeitschrift für Physikalische Chemie, Oldenbourg Verlag, 2014, 228, pp.1121-1133. ⟨hal-01149032⟩
  • Margaux Mesle, Gilles Dromart, Phil M. Oger. Microbial methanogenesis in subsurface oil and coal. Research in Microbiology, Elsevier, 2013, 164 (9), pp.959-972. ⟨10.1016/j.resmic.2013.07.004⟩. ⟨hal-02122787⟩
  • Anaïs Cario, Phil M. Oger. Adaptation of the membrane in Archaea. Biophysical Chemistry, Elsevier, 2013, 183, pp.42-56. ⟨10.1016/j.bpc.2013.06.020⟩. ⟨hal-02122759⟩
  • M. Meslé, C. Périot, G. Dromart, Phil M. Oger. Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales. Journal of Applied Microbiology, Wiley, 2013, 114 (1), pp.55-70. ⟨10.1111/jam.12015⟩. ⟨hal-02122792⟩
  • Phil M. Oger, Corinne Dorel. iGEM Europe 2013: Des gènes et des machines. Biofutur, Elsevier - Cachan : Lavoisier, 2013, 349, pp.50-51. ⟨hal-02122782⟩
  • C. Lepleux, M. Turpault, P. Oger, P. Frey-Klett, Stephane Uroz. Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩. ⟨hal-02916134⟩
  • Stephane Uroz, P. Oger, E. Morin, P. Frey-Klett. Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (8), pp.3020-3024. ⟨10.1128/AEM.06742-11⟩. ⟨hal-02916135⟩
  • C. Lepleux, M. Turpault, Phil M. Oger, P. Frey-Klett, S. Uroz. Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩. ⟨hal-02122800⟩
  • Eric Prestel, Christophe Regeard, James Andrews, Philippe M. Oger, Michael Dubow. A novel bacteriophage morphotype with a ribbon-like structure at the tail extremity. Research Journal of Microbiology, 2012, 7 (1), pp.75. ⟨10.3923/jm.2012.75.81⟩. ⟨hal-00714242⟩
  • Phil M. Oger. Methanization of fossil fuel: a possible sustainable future energy source for mankind. Fermentation, MDPI, 2012, 1, pp.e110. ⟨hal-02122818⟩
  • Stéphane Uroz, P. Oger, Emmanuelle Morin, P. Frey-Klett. Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩. ⟨hal-01268355⟩
  • Philippe Oger, Bruno Franzetti. Des microbes repoussent les limites de la vie. Biofutur, Elsevier - Cachan : Lavoisier, 2012, pp.36-39. ⟨hal-00829758⟩
  • Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne A Goodwin, et al.. Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (21), pp.5974-5. ⟨10.1128/JB.01430-12⟩. ⟨hal-00773159⟩
  • Stéphane Uroz, Philippe Oger, Cendrella Lepleux, Christelle Collignon, Pascale Frey-Klett, et al.. Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems. Research in Microbiology, Elsevier, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩. ⟨insu-00682028⟩
  • Philippe Oger, Tatyana G. Sokolova, Darya A. Kozhevnikova, Nikolay A. Chernyh, Douglas H. Bartlett, et al.. Complete Genome Sequence of the Hyperthermophilic Archaeon Thermococcus sp Strain AM4, Capable of Organotrophic Growth and Growth at the Expense of Hydrogenogenic or Sulfidogenic Oxidation of Carbon Monoxide. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (24), pp.7019-7020. ⟨10.1128/JB.06259-11⟩. ⟨insu-00682014⟩
  • Jean-Louis Birrien, Xiang Zeng, Mohamed Jebbar, Marie-Anne Cambon-Bonavita, Joël Quérellou, et al.. Pyrococcus yayanosii sp. nov.,the first obligate piezophilic hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2011, Epub ahead of print. ⟨10.1099/ijs.0.024653-0⟩. ⟨hal-00609785⟩
  • Xu Jun, Lupeng Liu, Minjuan Xu, Philippe Oger, Fengping Wang, et al.. Complete Genome Sequence of the Obligate Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii CH1. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (16), pp.4297-4298. ⟨10.1128/JB.05345-11⟩. ⟨insu-00683340⟩
  • Pauline Vannier, Viggo Thor Marteinsson, Olafur Hedinn Fridjonsson, Philippe Oger, Mohamed Jebbar. Complete Genome Sequence of the Hyperthermophilic, Piezophilic, Heterotrophic, and Carboxydotrophic Archaeon Thermococcus barophilus MP. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (6), pp.1481-1482. ⟨10.1128/JB.01490-10⟩. ⟨insu-00683928⟩
  • Stephane Uroz, Phil Oger, Cendrella Lepleux, Christelle Collignon, Pascale Frey-Klett, et al.. Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems. Research in Microbiology, Elsevier, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩. ⟨hal-02916139⟩
  • Augustin Picard, Isabelle Daniel, D. Testemale, I. Kieffer, P. Bleuet, et al.. Monitoring microbial redox transformations of metal and metalloid elements under high pressure using in situ X-ray absorption spectroscopy. Geobiology, Wiley, 2011, 9 (2), pp.196-204. ⟨10.1111/j.1472-4669.2010.00270.x⟩. ⟨hal-00659828⟩
  • Anne-Marie Aucour, Sylvain Pichat, M. R. Macnair, Philippe Oger. Fractionation of Stable Zinc Isotopes in the Zinc Hyperaccumulator Arabidopsis halleri and Nonaccumulator Arabidopsis petraea. Environmental Science and Technology, American Chemical Society, 2011, 45 (21), pp.9212-9217. ⟨10.1021/es200874x⟩. ⟨insu-00683310⟩
  • Philippe M. Oger, Isabelle Daniel, Aude Picard. In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure. Annals of the New York Academy of Sciences, Wiley, 2010, 1189, pp.113-120. ⟨10.1111/j.1749-6632.2009.05176.x⟩. ⟨hal-00681774⟩
  • Bruno Garcia, V. Beaumont, Erwan Perfetti, V. Rouchon, D. Blanchet, et al.. Experiments and geochemical modelling of CO(2) sequestration by olivine: Potential, quantification. Applied Geochemistry, Elsevier, 2010, 25 (9), pp.1383-1396. ⟨10.1016/j.apgeochem.2010.06.009⟩. ⟨insu-00677011⟩
  • Augustin Picard, Isabelle Daniel, Philippe Oger, Denis Testemale, Jean-Louis Hazemann. Microbial selenium and iron reduction under high pressure. Geochimica et Cosmochimica Acta, Elsevier, 2010, 74, pp.A816. ⟨insu-00681531⟩
  • Philippe Oger, Mohamed Jebbar. The many ways of coping with pressure. Research in Microbiology, Elsevier, 2010, 161 (10), pp.799-809. ⟨10.1016/j.resmic.2010.09.017⟩. ⟨hal-00618586⟩
  • Stéphane Uroz, Yves Dessaux, Phil M. Oger. Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication: The Yin and Yang of bacterial communication. ChemBioChem, Wiley-VCH Verlag, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩. ⟨hal-02122861⟩
  • X. Zeng, J.-L. Birrien, Y. Fouquet, G. Cherkashov, M. Jebbar, et al.. Pyrococcus CH1, an obligate piezophilic hyperthermophile extending the upper pressure-temperature limits for life. ISME Journal, Nature Publishing Group, 2009, pp.1 - 4. ⟨hal-00406501⟩
  • Ramón Penyalver, Phil M. Oger, Shengchang Su, Belén Alvarez, Carmina Salcedo, et al.. The S -Adenosyl- l -Homocysteine Hydrolase Gene ahcY of Agrobacterium radiobacter K84 Is Required for Optimal Growth, Antibiotic Production, and Biocontrol of Crown Gall Disease. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2009, 22 (6), pp.713-724. ⟨10.1094/MPMI-22-6-0713⟩. ⟨hal-02122845⟩
  • S. Uroz, Philippe Oger, E. Chapelle, M.-T. Adeline, D. Faure, et al.. A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.. Applied and Environmental Microbiology, American Society for Microbiology, 2008, 74, pp.1357-1366. ⟨hal-00342712⟩
  • Philippe Oger, Isabelle Daniel, Alexandre Simionovici, A. Picard. Micro-X-ray absorption near edge structure as a suitable probe to monitor live organisms.. Spectrochimica Acta Part B: Atomic Spectroscopy, Elsevier, 2008, 63(4), pp.512-517. ⟨10.1016/j.sab.2007.12.013⟩. ⟨hal-00341800⟩
  • A. Picard, Isabelle Daniel, Gilles Montagnac, Philippe Oger. In situ monitoring of alcohol fermentation by Saccharomyces cerevisiae under high pressure by quantitative Raman spectroscopy.. Extremophiles, Springer Verlag, 2007, 11, pp.445-452. ⟨hal-00342705⟩
  • A. Picard, Isabelle Daniel, Gilles Montagnac, Philippe Oger. In situ monitoring by quantitative Raman spectroscopy of alcoholic fermentation by Saccharomyces cerevisiae under high pressure.. Extremophiles, Springer Verlag, 2007, 11, pp.445-452. ⟨hal-00341399⟩
  • Isabelle Daniel, Philippe Oger, R. Winter. Origin of life and biochemistry under high pressure-conditions.. Chemical Society Reviews, Royal Society of Chemistry, 2006, 35, pp.858-875. ⟨hal-00342697⟩
  • Isabelle Daniel, Philippe Oger, R. Winter. Origins of life and biochemistry under high-pressure conditions.. Chemical Society Reviews, Royal Society of Chemistry, 2006, 35(10), pp.858-875. ⟨hal-00341807⟩
  • Stéphane Uroz, Yves Dessaux, Philippe Oger, Siri Ram Chhabra, Miguel Cámara, et al.. N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.. Archives of Microbiology, Springer Verlag, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩. ⟨hal-00119105⟩
  • L. Vial, C. Cuny, K. Gluchoff-Fiasson, G. Comte, Philippe Oger, et al.. AHL-mediated quorum-sensing in Azospirillum: an exception rather than a rule.. Microbial Ecology, Springer Verlag, 2006, 58, pp.155-168. ⟨hal-00342700⟩
  • Ludovic Vial, Caroline Cuny, Katia Gluchoff-Fiasson, Gilles Comte, Phil M. Oger, et al.. N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule.. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58, pp.155-168. ⟨10.1111/j.1574-6941.2006.00153.x⟩. ⟨hal-00119123⟩
  • Philippe Oger, Isabelle Daniel, A. Picard. Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.. Biochimica et Biophysica Acta Proteins and Proteomics, Elsevier, 2006, 1764(3), pp.434-442. ⟨hal-00341802⟩
  • Aude Picard, Philippe Oger, Isabelle Daniel, Hervé Cardon, Gilles Montagnac, et al.. A sensitive pressure sensor for diamond anvil cell experiments up to 2 GPa: FluoSpheres®. Journal of Applied Physics, American Institute of Physics, 2006, 100, ⟨10.1063/1.2234821⟩. ⟨hal-00093036⟩
  • Philippe Oger, Isabelle Daniel, Aude Picard. Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T. BBA - Biochimica et Biophysica Acta, Elsevier, 2006, 1764, pp.434-442. ⟨10.1016/j.bbapap.2005.11.009⟩. ⟨hal-00093586⟩
  • Stéphane Uroz, Siri Ram Chhabra, Miguel Cámara, Paul Williams, Philippe Oger, et al.. N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.. Microbiology, Microbiology Society, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩. ⟨hal-00019097⟩
  • S. Teyssier-Cuvelle, Phil M. Oger, C. Mougel, K. Groud, S. Farrand, et al.. A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems. Microbial Ecology, Springer Verlag, 2004, 48 (1), pp.10-18. ⟨10.1007/s00248-003-2023-6⟩. ⟨hal-02123026⟩
  • Philippe Oger, H. Mansouri, X. Nesme, Y. Dessaux. Engineering root exudation of Lotus towards the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere.. Microbiol. Ecol., 2004, 47 (1), pp.96-103. ⟨10.1007/s00248-003-2012-9⟩. ⟨hal-00122258⟩
  • Phil M. Oger, I. Daniel, B. Cournoyer, A. Simionovici. In situ micro X-ray absorption near edge structure study of microbiologically reduced selenite (SeO32−). Spectrochimica Acta Part B: Atomic Spectroscopy, Elsevier, 2004, 59 (10-11), pp.1681-1686. ⟨10.1016/j.sab.2004.07.021⟩. ⟨hal-02123018⟩
  • Stéphane Uroz, Cathy d'Angelo-Picard, Aurélien Carlier, Miena Elasri, Carine Sicot, et al.. Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.. Microbiology, Microbiology Society, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩. ⟨hal-00135468⟩
  • S. Farrand, Peter van Berkum, Phil M. Oger. Agrobacterium is a definable genus of the family Rhizobiaceae. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2003, 53 (5), pp.1681-1687. ⟨10.1099/ijs.0.02445-0⟩. ⟨hal-02123030⟩
  • Hounayda Mansouri, Annik Petit, Phil Oger, Yves Dessaux. Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.. Applied and Environmental Microbiology, American Society for Microbiology, 2002, 68 (5), pp.2562-6. ⟨10.1128/AEM.68.5.2562-2566.2002⟩. ⟨hal-00145331⟩
  • Phil M. Oger, S. Farrand. Two Opines Control Conjugal Transfer of an Agrobacterium Plasmid by Regulating Expression of Separate Copies of the Quorum-Sensing Activator Gene traR. Journal of Bacteriology, American Society for Microbiology, 2002, 184 (4), pp.1121-1131. ⟨10.1128/jb.184.4.1121-1131.2002⟩. ⟨hal-02123037⟩
  • Michael A Savka, Yves Dessaux, Philippe Oger, Silvia Rossbach. Engineering bacterial competitiveness and persistence in the phytosphere.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2002, 15 (9), pp.866-74. ⟨hal-00145850⟩
  • Martina Reitz, Phil M. Oger, Andreas Meyer, Karsten Niehaus, Stephen Farrand, et al.. Importance of the O-antigen, core-region and lipid A of rhizobial lipopolysaccharides for the induction of systemic resistance in potato to Globodera pallida. Nematology, Brill Academic Publishers, 2002, 4 (1), pp.73 - 79. ⟨10.1163/156854102760082221⟩. ⟨hal-01759659⟩
  • M. Elasri, S. Delorme, Philippe Lemanceau, G. Stewart, B. Laue, et al.. Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (3), pp.1198-1209. ⟨hal-02671516⟩
  • M. Elasri, S. Delorme, P. Lemanceau, G. Stewart, B. Laue, et al.. Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp.. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (3), pp.1198-209. ⟨10.1128/AEM.67.3.1198-1209.2001⟩. ⟨hal-00150154⟩
  • R. Penyalver, Phil M. Oger, M. Lopez, S. Farrand. Iron-Binding Compounds from Agrobacterium spp.: Biological Control Strain Agrobacterium rhizogenes K84 Produces a Hydroxamate Siderophore. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (2), pp.654-664. ⟨10.1128/AEM.67.2.654-664.2001⟩. ⟨hal-02123047⟩
  • Phil M. Oger, Stephen Farrand. Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system. Molecular Microbiology, Wiley, 2001, 41 (5), pp.1173-1185. ⟨10.1046/j.1365-2958.2001.02584.x⟩. ⟨hal-02123045⟩
  • P. Oger, H. Mansouri, Y. Dessaux. Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines.. Molecular Ecology, Wiley, 2000, 9 (7), pp.881-90. ⟨10.1046/j.1365-294x.2000.00940.x⟩. ⟨hal-00165030⟩
  • J. Zhu, Phil M. Oger, B. Schrammeijer, J. Hooykaas, S. Farrand, et al.. The Bases of Crown Gall Tumorigenesis. Journal of Bacteriology, American Society for Microbiology, 2000, 182 (14), pp.3885-3895. ⟨10.1128/JB.182.14.3885-3895.2000⟩. ⟨hal-02123051⟩
  • K. Palanichelvam, P. Oger, S. J. Clough, C. Cha, A. F. Bent, et al.. A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2000, 13 (10), pp.1081-91. ⟨hal-00165069⟩
  • Philippe Oger, Yves Dessaux, A. Petit, L. Gardan, Charles Manceau, et al.. Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations. Genetics Selection Evolution, BioMed Central, 1998, 30 (suppl. 1), pp.S311-S321. ⟨hal-02698473⟩
  • Phil Oger, Yves Dessaux, Annick Petit, Louis Gardan, Charles Manceau, et al.. Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations. Genetics Selection Evolution, BioMed Central, 1998, 30 (Suppl), pp.S311-S321. ⟨hal-00894248⟩
  • Phil M. Oger, Kun-Soo Kim, Rebecca Sackett, Kevin Piper, Stephen Farrand. Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer. Molecular Microbiology, Wiley, 1998, 27 (2), pp.277-288. ⟨10.1046/j.1365-2958.1998.00671.x⟩. ⟨hal-02123057⟩
  • Phil M. Oger, Annik Petit, Yves Dessaux. Genetically engineered plants producing opines alter their biological environment. Nature Biotechnology, Nature Publishing Group, 1997, 15 (4), pp.369-372. ⟨10.1038/nbt0497-369⟩. ⟨hal-02123062⟩
  • Phil M. Oger, Annik Petit, Yves Dessaux. A simple technique for direct transformation and regeneration of the diploid legume species Lotus japonicus. Plant Science, Elsevier, 1996, 116 (2), pp.159-168. ⟨10.1016/0168-9452(96)04391-9⟩. ⟨hal-02123064⟩
  • Y. Dessaux, Miena Elasri, E. Glickmann, Phil M. Oger, Annick Petit, et al.. The use of digoxigenin-lebbelled probes to detect DNA sequences specific for plant pathogenic bacteria. Cellular and Molecular Biology, R. Wegmann, 1995, 41 (7), pp.993-943. ⟨hal-02123170⟩

Conference papers4 documents

  • Stéphane Uroz, Marc Buee, Aurélie Cébron, Wietse de Boer, Pascale Frey-Klett, et al.. Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils. MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France. ⟨hal-02796164⟩
  • Cendrella Lepleux, Marie-Pierre Turpault, P. Oger, Pascale Frey-Klett, Stéphane Uroz. Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil. 14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark. ⟨hal-02745200⟩
  • Stéphane Uroz, Marie-Pierre Turpault, P. Oger, Christelle Collignon, Wietse de Boer, et al.. Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers. Colloque FRB 2011, Sep 2011, Montpellier, France. ⟨hal-02744770⟩
  • Philippe Oger, Yves Dessaux, A. Petit, L. Gardan, Charles Manceau, et al.. Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations. Colloque BRG/USTL. Méthodologies de gestion et de conservation des ressources génétiques, Oct 1997, Lille, France. ⟨hal-02840574⟩

Poster communications4 documents

  • Yvan Rahbé, Michel Droux, Philippe Oger, Nicole Cotte-Pattat. Full genome and characterization of a new species of Chryseobacterium with phytopathogenic potential on Vicia faba (Fabaceae; Papilionoidae). 14e Rencontres Plantes-Bactéries Aussois 2020, Jan 2020, Aussois, France. ⟨hal-02373109⟩
  • Stéphane Uroz, Phil Oger, Emilie Tisserand, Aurélie Cébron, Marie-Pierre Turpault, et al.. Forest tree species shape their soil microbiome. Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands. 2015. ⟨hal-02800245⟩
  • Stéphane Uroz, Phil Oger, Emilie Tisserand, Aurélie Cébron, Marie-Pierre Turpault, et al.. Forest tree species shape their soil microbiome. 1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014. ⟨hal-02796803⟩
  • Cendrella Lepleux, Stéphane Uroz, Marie-Pierre Turpault, P. Oger, Pascale Frey-Klett. Caractérisation taxonomique et fonctionnelle des communautés bactériennes associées à la surface des minéraux : Combinaison d’approches non-cultivable et cultivable. Congrès Ecole Thématique Expert Génomique Environnementale (ETEGE), 2012, Aussois, France. 2012. ⟨hal-02805606⟩

Book sections12 documents

  • M. Salvador Castell, P. Oger, Judith Peters. High-pressure Adaptation of Extremophiles and Biotechnological Applications. Physiological and Biotechnological aspects of extremophiles, In press. ⟨hal-02122331⟩
  • Philippe Oger. Vivre sous pression dans la biosphère profonde. 101 secrets de l'ADN, 4, CNRS Editions, pp.151-153, 2019, 9782271123237. ⟨hal-02122323⟩
  • Judith Peters, Ruth Prassl, P. Oger. Probing the Structure and Dynamics of Cells, Cell Components and Endogenous Nanoparticles Under Extreme Conditions with Neutrons. Biological, Physical and Technical Basics of Cell Engineering, Springer Singapore, pp.401-420, 2018. ⟨hal-02122309⟩
  • Stéphane Uroz, Phil M. Oger. Screening for N-AHSL-Based-Signaling Interfering Enzymes. METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩. ⟨hal-01688921⟩
  • Phil M. Oger. Homeoviscous Adaptation of Membranes in Archaea. High Pressure Bioscience, pp.383-403, 2015. ⟨hal-02122094⟩
  • Bernard Ollivier, Jean Borgomano, Philippe Oger. Petroleum: from formation to microbiology.. Microbial life in the deep biosphere, De Gruyter, pp.161 -185, 2014. ⟨hal-00989881⟩
  • Stéphane Uroz, Phil M. Oger. Screening for N-AHSL-Based-Signaling Interfering Enzymes. Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010. ⟨hal-02122828⟩
  • Daniel Prieur, D. Bartlett, C. Kato, Ph. Oger, Mohamed Jebbar. Piezophilic Prokaryotes. Philippe Sébert. Comparative High Pressure Biology, Science Publishers, pp.285-322, 2010. ⟨hal-00620691⟩
  • Bénédicte Ménez, S Dupraz, Emmanuelle Gérard, François Guyot, Céline Rommevaux, et al.. Impact of the deep biosphere on CO2 storage performance. Geotechnologien Science Reports, 9, pp.150-163, 2007, French-German Symposium on Geological storage of CO2. ⟨hal-02122968⟩
  • Phil M. Oger, Jean-Claude Chervin, Olivier Grasset, Jean-Marie Perrier-Cornet. METROLOGIE : CALIBRANTS DE PRESSION POUR LA GAMME 0 - 2 GPA. Outils et méthodes pour la recherche à haute pression, Réseau CNRS des Hautes Pressions, pp.1-30, 2005. ⟨hal-02123176⟩
  • Phil Oger, Yves Dessaux. Agrobacterium-mediated transformation of Lotus species. P.K. Jaiwal, R.P. Singh. Applied Genetics of Leguminosae Biotechnology, Springer, pp.255-281, 2004, Focus on Biotechnology Vol. 10B. ⟨hal-00134557⟩
  • Stephen Farrand, Yinping Qin, Phil M. Oger. Quorum-sensing system of Agrobacterium plasmids: Analysis and utility. Methods in Enzymology, pp.452-484, 2002. ⟨hal-02123042⟩

Patents3 documents

  • Phil M. Oger, Gilles Dromart. METHOD FOR PRODUCING METHANE GAS. France, Patent n° : WO2011089151. 2011. ⟨hal-02123181⟩
  • Denis Blanchet, Gilles Dromart, F. Haeseler, Phil M. Oger. Integrated method of producing calcite and biomass using cyanobacteria for energy valorization and mineral sequestration of co2. France, Patent n° : US20140099692A1. 2010. ⟨hal-02122741⟩
  • Phil M. Oger, Gilles Dromart. Procédé de production de gaz méthane. France, N° de brevet: FR 2 955 355. 2010. ⟨hal-02123180⟩