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Phil M. Oger

169
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Identifiants chercheurs

Présentation

Education 2007 Habilitation (University of Lyon) 1995 PhD summa cum laude in Plant Pathology (Paris University X1- Orsay) 1991 MS Plant Pathology (Paris University X1- Orsay) 1991 Engineer degree in Agronomy (National Institute ofr Agronomy, Paris) Professional experience 2016-present CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon 2000-2015 CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon 1999-2000 Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette 1996-1999 Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA) Teaching 2014 - 2nd and 3rd year BS at INSA de Lyon and ENS de Lyon 2005 - 2014 4th year BS and MS level at ENS de Lyon and University of Lyon 1992 - 1995 1st year BS at University of Paris XI-Orsay Teaching 2014 - 2005 - 2014 1992 - 1995 CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA) 2nd and 3rd year BS at INSA de Lyon and ENS de Lyon 4th year BS and MS level at ENS de Lyon and University of Lyon 1st year BS at University of Paris XI-Orsay Research interests Research in my group aims at deciphering from the atomic to the genetic level the behavior and adaptation of Archaea in response to environmental stresses. Our aim is to explore the limits of life in the deep-biosphere, with an emphasis on the adaptation to hydrostatic pressure, temperature and salinity variations in deep-sea hydrothermal vents. Over the years we have developped the two widely accepted hypethermophilic archaea, e.g. Thermococcus barophilus and Pyrococcus yayanosii, as genetic models for the study of high-hydrostatic pressure adaptation in deep-sea hydrothermal vents. Our approaches are multi- and trans-disciplinary since we aim at understanding the physics behind the physiologic adaptation of cells. To this avail we use techniques ranging from spectral physics (Xray and Neutron diffraction and diffusion) to meta-omics (RNASeq and Proteomics, in order to track the genetic imprint of these adaptations from the cell level to the molecule. This combination of approaches has led to two major scientific discoveries over the last two years. First, we have described the first atomistic model of of high hydrostatic pressure adaptation (Martinez Sci Rep 2016; Cario Sci Rep 2016) and described a novel membrane ultrstructure as a new adaptation strategy to high hydrostatic pressure and temperature in hyperthermohpiv Archaea (Cario Front Microbiol 2105).
Education 2007 Habilitation à Diriger des Recherches de l'Université Claude Bernard Lyon 1 1995 PhD summa cum laude en Phytopathologie (Université Paris X1-Orsay) 1991 DEA en Phytopathologie (Université Paris X1-Orsay/INAP-G) 1991 Ingénieur agronome (Institut National Agronomique Paris-Grignon) Expérience professionelle 2016-present DR CNRS, Adaptation aux Milieux Extrêmes, UMR 5240, INSA Lyon 2000-2015 CR puis DR CNRS, Géomicrobiology, Lab. de Géologie de Lyon, ENS de Lyon 1999-2000 Post-Doc, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette 1996-1999 Post-Doc, University of Illinois, Urbana-Champaign (USA) Enseignement 2014 - auj. 2005 - 2014 1992 - 1995

Publications

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Impact of Isotopic Exchange on Hydrated Protein Dynamics Revealed by Polarized Neutron Scattering

Agathe Nidriche , Martine Moulin , Philippe Oger , J. Ross Stewart , Lucile Mangin-Thro
PRX Life, 2024, 2 (1), pp.013005. ⟨10.1103/prxlife.2.013005⟩
Article dans une revue hal-04481004v1
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Biochemical characterization and mutational analysis of the NurA protein from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Guangyu Ma , Tan Lin , Peng Cao , Philippe Oger , Kunming Dong
Research in Microbiology, 2024, pp.104189. ⟨10.1016/j.resmic.2024.104189⟩
Article dans une revue hal-04480971v1
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Bradyrhizobium commune sp. nov., isolated from nodules of a wide range of native legumes across the Australian continent

Bénédicte Lafay , Elina Coquery , Philippe M Oger
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (7), pp.005971. ⟨10.1099/ijsem.0.005971⟩
Article dans une revue hal-04191550v1

Biochemical and mutational studies of an endonuclease V from the hyperthermophilic crenarchaeon Sulfolobus islandicus REY15A

Youcheng Yin , Jingru Shi , Likui Zhang , Qing Liu , Yong Gong
World Journal of Microbiology and Biotechnology, 2023, 39 (4), pp.90. ⟨10.1007/s11274-023-03526-2⟩
Article dans une revue hal-04297274v1
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Effects of Crowding and Cosolutes on Biomolecular Function at Extreme Environmental Conditions

Judith Peters , Rosario Oliva , Antonino Caliò , Philippe Oger , Roland Winter
Chemical Reviews, 2023, 123 (23), pp.13441-13488. ⟨10.1021/acs.chemrev.3c00432⟩
Article dans une revue hal-04296968v1
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Molecular Rearrangements in Protomembrane Models Probed by Laurdan Fluorescence

Loreto Misuraca , Roland Winter , Bruno Demé , Philippe M Oger , Judith Peters
Membranes, 2023, 13 (4), pp.386. ⟨10.3390/membranes13040386⟩
Article dans une revue hal-04297292v1
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Thermostable DNA ligases from hyperthermophiles in biotechnology

Jingru Shi , Philippe Oger , Peng Cao , Likui Zhang
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1198784⟩
Article dans une revue hal-04297154v1
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The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals

Cintia Blanco Nouche , Cédric Paris , Tiphaine Dhalleine , Philippe Oger , Marie-Pierre Turpault
Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩
Article dans une revue hal-04297012v1
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Biochemical characterization and mutational studies of endonuclease Q from the hyperthermophilic euryarchaeon Thermococcus gammatolerans

Mai Wu , Guangyu Ma , Yushan Lin , Philippe Oger , Peng Cao
DNA Repair, 2023, 126, pp.103490. ⟨10.1016/j.dnarep.2023.103490⟩
Article dans une revue hal-04297134v1
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Incorporation and localisation of alkanes in a protomembrane model

Loreto Misuraca , Josephine Loricco , Philippe Oger , Judith Peters , Bruno Demé
Biochimica et Biophysica Acta:Biomembranes, 2023, 1865 (3), pp.184119. ⟨10.1016/j.bbamem.2023.184119⟩
Article dans une revue hal-04297309v1
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Phytoplanktonic species in the haloalkaline Lake Dziani Dzaha select their archaeal microbiome

Maxime Bruto , Philippe Oger , Patrice Got , Cécile Bernard , Delphine Melayah
Molecular Ecology, 2023, 32 (24), pp.6824-6838. ⟨10.1111/mec.17179⟩
Article dans une revue hal-04277813v1
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Biochemical characterization and mutational analysis of a novel flap endonuclease 1 from Thermococcus barophilus Ch5

Tan Lin , Likui Zhang , Donghao Jiang , Leilei Wu , Kaige Chen
International Journal of Biochemistry and Cell Biology, 2022, 143, pp.106154. ⟨10.1016/j.biocel.2021.106154⟩
Article dans une revue hal-03722823v1
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Synthesis of phospholipids under plausible prebiotic conditions and analogies with phospholipid biochemistry or origin of life studies

Michele Fiore , Carolina Chieffo , Augustin Lopez , Dimitri Fayolle , Johal Ruiz
Astrobiology, inPress, ⟨10.1089/ast.2021.0059⟩
Article dans une revue hal-03591985v1

Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice Rodrigues
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Article dans une revue hal-03915632v1
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Alkanes as Membrane Regulators of the Response of Early Membranes to Extreme Temperatures

Loreto Misuraca , Antonino Caliò , Josephine Loricco , Ingo Hoffmann , Roland Winter
Life, 2022, 12 (3), pp.445. ⟨10.3390/life12030445⟩
Article dans une revue hal-03930744v1

Biochemical characterization and mutational analysis of a mismatch glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Lei Wang , Tan Lin , Philippe Oger , Yong Gong , Likui Zhang
DNA Repair, 2022, 114, pp.103321. ⟨10.1016/j.dnarep.2022.103321⟩
Article dans une revue hal-03722864v1
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Membrane adaptation in the hyperthermophilic archaeon Pyrococcus furiosus relies upon a novel strategy involving glycerol monoalkyl glycerol tetraether lipids

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Philippe M Oger
Environmental Microbiology, 2022, 24 (4), pp.2029-2046. ⟨10.1111/1462-2920.15923⟩
Article dans une revue hal-03845187v1
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Philippe Oger
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Article dans une revue hal-03194986v1
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High temperature molecular motions within a model protomembrane architecture

Loreto Misuraca , Tatsuhito Matsuo , Aline Cisse , Josephine Loricco , Antonio Caliò
Physical Chemistry Chemical Physics, 2022, 24, pp.15083-15090. ⟨10.1039/D2CP01205G⟩
Article dans une revue hal-03722910v1
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Unravelling the Adaptation Mechanisms to High Pressure in Proteins

Antonino Caliò , Cécile Dubois , Stéphane Fontanay , Michael Marek Koza , François Hoh
International Journal of Molecular Sciences, 2022, 23 (15), pp.8469. ⟨10.3390/ijms23158469⟩
Article dans une revue hal-03744880v1
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The Exploration of the Thermococcus barophilus Lipidome Reveals the Widest Variety of Phosphoglycolipids in Thermococcales

Maxime Tourte , Sarah Coffinet , Lars Wörmer , Julius S Lipp , Kai-Uwe Hinrichs
Frontiers in Microbiology, 2022, 13, pp.869479. ⟨10.3389/fmicb.2022.869479⟩
Article dans une revue hal-03722871v1
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Complete genome of Bradyrhizobium sp. strain BDV5419, representative of Australian genospecies L

Christine Oger-Desfeux , Jerome Briolay , P. Oger , Bénédicte Lafay
Microbiology Resource Announcements, 2021, 10 (8), pp.e00042-21. ⟨10.1128/MRA.00042-21⟩
Article dans une revue hal-03138171v1
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The Piezo-Hyperthermophilic Archaeon Thermococcus piezophilus Regulates Its Energy Efficiency System to Cope With Large Hydrostatic Pressure Variations

Yann Moalic , Jordan Hartunians , Cécile Dalmasso , Damien Courtine , Myriam Georges
Frontiers in Microbiology, 2021, 12, pp.730231. ⟨10.3389/fmicb.2021.730231⟩
Article dans une revue hal-03413270v1

Straightforward Synthesis of Chiral Terpenoid Building Blocks by Ru-Catalyzed Enantioselective Hydrogenation

Johal Ruiz , Philippe Oger , Laurent Soulère , Florence Popowycz
Journal of Organic Chemistry, 2021, ⟨10.1021/acs.joc.1c00677⟩
Article dans une revue hal-03275385v1
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Complete Genome Sequence of Bradyrhizobium sp. Strain BDV5040, Representative of Widespread Genospecies B in Australia

Christine Oger-Desfeux , Jérôme Briolay , Philippe Oger , Bénédicte Lafay
Microbiology Resource Announcements, 2021, 10 (3), pp.e01326-20. ⟨10.1128/MRA.01326-20⟩
Article dans une revue hal-03118246v1
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Characterisation of a synthetic Archeal membrane reveals a possible new adaptation route to extreme conditions

Marta Salvador-Castell , Maksym Golub , Nelli Erwin , Bruno Demé , Nicholas J Brooks
Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02178-y⟩
Article dans une revue hal-03272003v1
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Non-Polar Lipids as Regulators of Membrane Properties in Archaeal Lipid Bilayer Mimics

Marta Salvador-Castell , Nicholas J Brooks , Roland Winter , Judith Peters , Philippe M. Oger
International Journal of Molecular Sciences, 2021, 22 (11), ⟨10.3390/ijms22116087⟩
Article dans une revue hal-03272006v1
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Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1)

Laura Picard , Marie-Pierre M.-P. Turpault , P. Oger , Stephane Uroz
FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩
Article dans une revue hal-03000681v1
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Characterization of a novel type III alcohol dehydrogenase from Thermococcus barophilus Ch5

Likui Zhang , Donghao Jiang , Yuting Li , Leilei Wu , Qing Liu
International Journal of Biological Macromolecules, 2021
Article dans une revue hal-03090883v1
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Biochemical characterization and mutational studies of a novel 3-methlyadenine DNA glycosylase II from the hyperthermophilic Thermococcus gammatolerans

Donghao Jiang , Likui Zhang , Kunming Dong , Yong Gong , Philippe Oger
DNA Repair, 2021
Article dans une revue hal-03035060v1
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Acid Hydrolysis for the Extraction of Archaeal Core Lipids and HPLC-MS Analysis

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Phil Oger
Bio-protocol , 2021, 11 (16), ⟨10.21769/bioprotoc.4118⟩
Article dans une revue hal-03379753v1
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Alkanes increase the stability of early life membrane models under extreme pressure and temperature conditions

Loreto Misuraca , Bruno Demé , Philippe Oger , Judith Peters
Communications Chemistry, 2021, ⟨10.1038/s42004-021-00467-5⟩
Article dans une revue hal-03154757v1
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Reappraisal of archaeal C20-C25 diether lipid (extended archaeol) origin and use as a biomarker of hypersalinity

Flore Vandier , Maxime Tourte , Cara Doumbe-Kingue , Julien Plancq , Philippe Schaeffer
Organic Geochemistry, inPress, ⟨10.1016/j.orggeochem.2021.104276⟩
Article dans une revue hal-03289759v1
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Reappraisal of archaeal C20-C25 diether lipid (extended archaeol) origin and use as a biomarker of hypersalinity

Flore Vandier , Maxime Tourte , Cara Doumbe-Kingue , Julien Plancq , Philippe Schaeffer
Organic Geochemistry, inPress, ⟨10.1016/j.orggeochem.2021.104276⟩
Article dans une revue hal-03289860v1
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Identification of a novel bifunctional uracil DNA glycosylase from Thermococcus barophilus Ch5

Likui Zhang , Donghao Jiang , Qi Gan , Haoqiang Shi , Li Miao
Applied Microbiology and Biotechnology, In press, ⟨10.1007/s00253-021-11422-8⟩
Article dans une revue hal-03280471v1
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An alternative pathway for repair of deaminated bases in DNA triggered by archaeal NucS endonuclease

Likui Zhang , Haoqiang Shi , Qi Gan , Yuxiao Wang , Mai Wu
DNA Repair, 2020, pp.102734. ⟨10.1016/j.dnarep.2019.102734⟩
Article dans une revue hal-02334467v1
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Characterization of a Family IV uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Qi Gan , Mengfan He , Haoqiang Shi , Phil Oger , Zhihui Yang
International Journal of Biological Macromolecules, 2020, 146, pp.475-481. ⟨10.1016/j.ijbiomac.2019.12.202⟩
Article dans une revue hal-02441935v1
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Apolar Polyisoprenoids Located in the Midplane of the Bilayer Regulate the Response of an Archaeal-like Membrane to High Temperature and Pressure

Josephine G Loricco , Marta Salvador-Castell , Bruno Demé , Judith Peters , Philippe Oger
Frontiers in Chemistry, 2020
Article dans une revue hal-02987030v1
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Induction of non-lamellar phases in archaeal lipids at high temperature and high hydrostatic pressure by apolar polyisoprenoids

Marta Salvador-Castell , Nicholas Brooks , Judith Peters , P. Oger
Biochimica et Biophysica Acta:Biomembranes, 2020, 1862 (2), pp.183130. ⟨10.1016/j.bbamem.2019.183130⟩
Article dans une revue hal-02364592v1
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Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral

Stephane Uroz , Laura Picard , Marie-Pierre M.-P. Turpault , Lucas Auer , J. Armengaud
Environmental Microbiology, inPress, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩
Article dans une revue hal-02902180v1
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Novel intact polar and core lipid compositions in the Pyrococcus model species, P. furiosus and P. yayanosii, reveal the largest lipid diversity amongst Thermococcales

Maxime Tourte , Vanessa Kuentz , Philippe Schaeffer , Vincent Grossi , Anaïs Cario
Biomolecules, 2020, 10 (6), pp.830. ⟨10.3390/biom10060830⟩
Article dans une revue hal-02861881v1
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New Insights Into DNA Repair Revealed by NucS Endonucleases From Hyperthermophilic Archaea

Likui Zhang , Donghao Jiang , Mai Wu , Zhihui Yang , Philippe Oger
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01263⟩
Article dans une revue hal-02887791v1
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Functionalized Membrane Domains: An Ancestral Feature of Archaea?

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Phil Oger
Frontiers in Microbiology, 2020, 11, pp.526. ⟨10.3389/fmicb.2020.00526⟩
Article dans une revue hal-02553764v1
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Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain

Laura Picard , Philippe Oger , Marie-Pierre M.-P. Turpault , Stephane Uroz
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩
Article dans une revue hal-02939115v1
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High-Temperature Behavior of Early Life Membrane Models

Loreto Misuraca , Antonino Caliò , Isabelle Grillo , Axelle Grélard , Philippe Marie Oger
Article dans une revue hal-02988681v1
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Structural Characterization of an Archaeal Lipid Bilayer as a Function of Hydration and Temperature

Marta Salvador-Castell , Bruno Demé , Philippe M. Oger , Judith Peters
International Journal of Molecular Sciences, 2020, 21 (5), pp.1816. ⟨10.3390/ijms21051816⟩
Article dans une revue hal-02508365v1
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Apolar Polyisoprenoids Located in the Midplane of the Bilayer Regulate the Response of an Archaeal-Like Membrane to High Temperature and Pressure

Josephine G Loricco , Marta Salvador-Castell , Bruno Demé , Judith Peters , Philippe Oger
Frontiers in Chemistry, 2020, 8, ⟨10.3389/fchem.2020.594039⟩
Article dans une revue hal-03000614v1
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Lipid phase separation induced by the apolar polyisoprenoid squalane demonstrates its role in membrane domain formation in archaeal membranes

Marta Salvador-Castell , Bruno Demé , Phil Oger , Judith Peters
Langmuir, 2020, 36 (26), pp.7375-7382. ⟨10.1021/acs.langmuir.0c00901⟩
Article dans une revue hal-02862864v1
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Characterization and application of a family B DNA polymerase from the hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans

Likui Zhang , Donghao Jiang , Haoqiang Shi , Mai Wu , Qi Gan
International Journal of Biological Macromolecules, 2020, 156, pp.217-224. ⟨10.1016/j.ijbiomac.2020.03.204⟩
Article dans une revue hal-02526997v1
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In Search for the Membrane Regulators of Archaea

Marta Salvador-Castell , Maxime Tourte , Philippe M. Oger
International Journal of Molecular Sciences, 2019, 20 (18), pp.4434. ⟨10.3390/ijms20184434⟩
Article dans une revue hal-02283370v1
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Plant Symbionts Are Engineers of the Plant-Associated Microbiome

Stéphane Uroz , Pierre-Emmanuel Courty , P. Oger
Trends in Plant Science, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩
Article dans une revue hal-02334474v1
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Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Haoqiang Shi , Yanchao Huang , Qi Gan , Mianwen Rui , Hongxun Chen
Applied Microbiology and Biotechnology, 2019, ⟨10.1007/s00253-019-09736-9⟩
Article dans une revue hal-02091415v1

Protomembranes at the origin of life

Loreto Misuraca , Bruno Demé , Judith Peters , Phil M. Oger , P. Oger
European Biophysics Journal, 2019
Article dans une revue hal-02334473v1
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Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans

Likui Zhang , Yuting Li , Haoqiang Shi , Dai Zhang , Zhihui Yang
Applied Microbiology and Biotechnology, 2019, ⟨10.1007/s00253-019-10031-w⟩
Article dans une revue hal-02283293v1

Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]

S. Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩
Article dans une revue hal-02122345v1
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Biochemical characterization and mutational studies of the thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Haoqiang Shi , Qi Gan , Donghao Jiang , Yuqi Wu , Youcheng Yin
International Journal of Biological Macromolecules, 2019, ⟨10.1016/j.ijbiomac.2019.05.073⟩
Article dans une revue hal-02130096v1
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The first study on the impact of osmolytes in whole cells of high temperature-adapted microorganisms

Marta Salvador-Castell , Maksym Golub , Nicolas Martinez , Jacques Ollivier , Judith Peters
Soft Matter, 2019, 15 (41), pp.8381-8391. ⟨10.1039/c9sm01196j⟩
Article dans une revue hal-02318499v1
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Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea

P. Oger
Genome Announcements, 2018, 6 (8)
Article dans une revue hal-02001367v1
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Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Y. Wang , L. Zhang , X. Zhu , Y. Li , H. Shi
International Journal of Biological Macromolecules, 2018, 117, pp.17-24. ⟨10.1016/j.ijbiomac.2018.05.155⟩
Article dans une revue hal-02001372v1

The Effect of Crowding on Protein Stability, Rigidity, and High Pressure Sensitivity in Whole Cells

M. Golub , N. Martinez , G. Michoud , J. Ollivier , M. Jebbar
Langmuir, 2018, 34 (35), pp.10419-10425. ⟨10.1021/acs.langmuir.8b01240⟩
Article dans une revue hal-02001365v1
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Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells

Jean-Loup Cadiou , Sylvain Pichat , Victor P. Bondanese , Alexandre Soulard , Toshiyuki Fujii
Scientific Reports, 2017, 7, ⟨10.1038/srep44533⟩
Article dans une revue hal-01632761v1

Coping with the pressure: Microbial adaptation to high hydrostatic pressure in deep sea hydrothermal vents

Phil M. Oger
Journal of Physics: Conference Series, 2017, 950, pp.032016. ⟨10.1088/1742-6596/950/3/032016⟩
Article dans une revue hal-02122369v1

Can a target zone safer than Lewinnek's safe zone be defined to prevent instability of total hip arthroplasties? Case-control study of 56 dislocated THA and 93 matched controls

Nicolas Reina , Sophie Putman , Romain Desmarchelier , El Hadi Sari Ali , Philippe Chiron
Orthopaedics & Traumatology: Surgery & Research, 2017, 103 (5), pp. 657-661. ⟨10.1016/j.otsr.2017.05.015⟩
Article dans une revue hal-01587112v1

Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin

P. M. Oger , N. Callac , C. Oger-Desfeux , S. Hughes , B. Gillet
Genome Announcements, 2017, 5 (7), ⟨10.1128/genomeA.01667-16⟩
Article dans une revue hal-02001357v1

Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.

Stéphane Uroz , P. Oger
Systematic and Applied Microbiology, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩
Article dans une revue hal-01644024v1

Epsilonproteobacteria dominate bacterial diversity at a natural tar seep

F. Lormieres , P. M. Oger
Comptes Rendus Biologies, 2017, 340 (4), pp.238-243. ⟨10.1016/j.crvi.2016.10.001⟩
Article dans une revue hal-02001356v1

700 MPa sample stick for studying liquid samples or solid-gas reactions down to 1.8 K and up to 550 K

E. Lelièvre-Berna , B. Demé , J. Gonthier , J-P. Gonzales , J. Maurice
Journal of Neutron Research, 2017, 19 (1/2), pp.77-84
Article dans une revue hal-02001352v1

Erratum for Dalmasso et al., Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures

C. Dalmasso , P. Oger , D. Courtine , M. Georges , K. Takai
Genome Announcements, 2016, 4 (5)
Article dans une revue hal-02001333v1

Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise

Cécile Dalmasso , Philippe Oger , Gwendoline Selva , Damien Courtine , Stéphane L’haridon
Systematic and Applied Microbiology, 2016, 39 (7), pp.440-444. ⟨10.1016/j.syapm.2016.08.003⟩
Article dans une revue hal-02636723v1
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High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes

Nicolas Martinez , G. Michoud , A. Cario , J. Ollivier , Bruno Franzetti
Scientific Reports, 2016, 6, ⟨10.1038/srep32816⟩
Article dans une revue hal-01427793v1
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Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation

Natalia Guschinskaya , Romain Brunel , Maxime Tourte , Gina L. Lipscomb , Michael W. W. Adams
Scientific Reports, 2016, 6, pp.36711. ⟨10.1038/srep36711⟩
Article dans une revue hal-01917847v1
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Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus

A. Cario , M. Jebbar , A. Thiel , N. Kervarec , P. M. Oger
Scientific Reports, 2016, 6, pp.29483. ⟨10.1038/srep29483⟩
Article dans une revue hal-02001331v1
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Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

S. Uroz , P. Oger , E. Tisserand , A. Cebron , M. -P. Turpault
Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩
Article dans une revue hal-01579579v1

Medical applications of Cu, Zn, and S isotope effects

F. Albarede , P. Telouk , V. Balter , V. P. Bondanese , E. Albalat
Metallomics, 2016, 8 (10), pp.1056-1070. ⟨10.1039/c5mt00316d⟩
Article dans une revue hal-02001326v1

Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent

N. Callac , P. Oger , F. Lesongeur , J. E. Rattray , P. Vannier
International Journal of Systematic and Evolutionary Microbiology, 2016, 66 (8), pp.3142-9. ⟨10.1099/ijsem.0.001160⟩
Article dans une revue hal-02001330v1

Altella emilieae Lissner, 2016 (Araneae: Dictynidae) is a Junior Synonym of Chaerea maritimus Simon, 1884 and a Widespread Mediterranean Halophilous Species

R. Bosmans , P. Oger , P. Ponel
Arachnology, 2016
Article dans une revue hal-01473812v1

Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate

P. Oger , T. G. Sokolova , D. A. Kozhevnikova , E. A. Taranov , P. Vannier
Genome Announcements, 2016, 4 (1), ⟨10.1128/genomeA.01534-15⟩
Article dans une revue hal-02001341v1

Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner

Victor Bondanese , Aline Lamboux , Mélanie Simon , Jérôme Lafont , Emmanuelle Albalat
Metallomics, 2016, 8 (11), pp.1177-1184. ⟨10.1039/c6mt00102e⟩
Article dans une revue hal-02132068v1

Methanogenic microbial community of the Eastern Paris Basin: Potential for energy production from organic-rich shales

Margaux Meslé , Charlotte Periot , Gilles Dromart , Philippe Oger
International Journal of Coal Geology, 2015, 149, pp.67-76. ⟨10.1016/j.coal.2015.07.002⟩
Article dans une revue hal-01360887v1
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Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Vincent Grossi , Philippe Schaeffer , Philippe M. Oger
Frontiers in Microbiology, 2015, 6, pp.1152. ⟨10.3389/fmicb.2015.01152⟩
Article dans une revue hal-01366758v1

High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Florence Lormières , Xiao Xiang , Phil M. Oger
Research in Microbiology, 2015, 166 (9), pp.710-716. ⟨10.1016/j.resmic.2015.07.004⟩
Article dans une revue hal-02122717v1

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

Stephane Uroz , Phil Oger
Genome Announcements, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩
Article dans une revue hal-02916120v1

Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Alex Mizgier , Axel Thiel , Mohamed Jebbar , Phil M. Oger
Biochimie, 2015, 118, pp.286-293. ⟨10.1016/j.biochi.2015.05.011⟩
Article dans une revue hal-02122725v1
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Classes of organic molecules targeted by a methanogenic microbial consortium grown on sedimentary rocks of various maturities

Margaux Meslé , Gilles Dromart , Frank Haeseler , Philippe Oger
Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.00589⟩
Article dans une revue hal-01256322v1

Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions

Pauline Vannier , Grégoire Michoud , Phil M. Oger , Viggó Þór Marteinsson , Mohamed Jebbar
Research in Microbiology, 2015, 166 (9), pp.717-725. ⟨10.1016/j.resmic.2015.07.006⟩
Article dans une revue hal-02122706v1

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Mohamed Jebbar , Bruno Franzetti , Eric Girard , Philippe Oger
Extremophiles, 2015, 19 (4), pp.721-40
Article dans une revue hal-01199266v1

La vie sous pression des microorganismes piézophiles

Phil M. Oger , Anaïs Cario
Biologie Aujourd'hui, 2014, 208 (3), pp.193-206. ⟨10.1051/jbio/2014023⟩
Article dans une revue hal-02122751v1
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Deep sea microbes probed by incoherent neutron scattering under high hydrostatic pressure.

Judith Peters , Nicolas Martinez , Grégoire Michoud , Anaïs Cario , Bruno Franzetti
Zeitschrift für Physikalische Chemie, 2014, 228, 10-12, pp.1121-1133. ⟨10.1515/zpch-2014-0547⟩
Article dans une revue hal-01149032v1

Adaptation of the membrane in Archaea

Anaïs Cario , Phil M. Oger
Biophysical Chemistry, 2013, 183, pp.42-56. ⟨10.1016/j.bpc.2013.06.020⟩
Article dans une revue hal-02122759v1

Microbial methanogenesis in subsurface oil and coal

Margaux Mesle , Gilles Dromart , Phil M. Oger
Research in Microbiology, 2013, 164 (9), pp.959-972. ⟨10.1016/j.resmic.2013.07.004⟩
Article dans une revue hal-02122787v1

iGEM Europe 2013: Des gènes et des machines

Phil M. Oger , Corinne Dorel
Biofutur, 2013, 349, pp.50-51
Article dans une revue hal-02122782v1

Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales

M. Meslé , C. Périot , G. Dromart , Phil M. Oger
Journal of Applied Microbiology, 2013, 114 (1), pp.55-70. ⟨10.1111/jam.12015⟩
Article dans une revue hal-02122792v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stéphane Uroz , P. Oger , Emmanuelle Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-01268355v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stephane Uroz , P. Oger , E. Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-02916135v1

A novel bacteriophage morphotype with a ribbon-like structure at the tail extremity

Eric Prestel , Christophe Regeard , James Andrews , Philippe M. Oger , Michael Dubow
Research Journal of Microbiology, 2012, 7 (1), pp.75. ⟨10.3923/jm.2012.75.81⟩
Article dans une revue hal-00714242v1

Methanization of fossil fuel: a possible sustainable future energy source for mankind

Phil M. Oger
Fermentation, 2012, 1, pp.e110
Article dans une revue hal-02122818v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , Phil M. Oger , P. Frey-Klett , S. Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02122800v1

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.

Susan Lucas , James Han , Alla Lapidus , Jan-Fang Cheng , Lynne A Goodwin
Journal of Bacteriology, 2012, 194 (21), pp.5974-5. ⟨10.1128/JB.01430-12⟩
Article dans une revue hal-00773159v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , P. Oger , P. Frey-Klett , Stephane Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp. 7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02916134v1

Des microbes repoussent les limites de la vie

Philippe M. Oger , Bruno Franzetti
Biofutur, 2012, 336, pp.36-39
Article dans une revue hal-00829758v1

Fractionation of Stable Zinc Isotopes in the Zinc Hyperaccumulator Arabidopsis halleri and Nonaccumulator Arabidopsis petraea

Anne-Marie Aucour , Sylvain Pichat , M. R. Macnair , Philippe M. Oger
Environmental Science and Technology, 2011, 45 (21), pp.9212-9217. ⟨10.1021/es200874x⟩
Article dans une revue insu-00683310v1

Monitoring microbial redox transformations of metal and metalloid elements under high pressure using in situ X-ray absorption spectroscopy

Augustin Picard , Isabelle Daniel , D. Testemale , I. Kieffer , P. Bleuet
Geobiology, 2011, 9 (2), pp.196-204. ⟨10.1111/j.1472-4669.2010.00270.x⟩
Article dans une revue hal-00659828v1

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Stéphane Uroz , Philippe M. Oger , Cendrella Lepleux , Christelle Collignon , Pascale P. Frey-Klett
Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩
Article dans une revue insu-00682028v1

Complete Genome Sequence of the Hyperthermophilic, Piezophilic, Heterotrophic, and Carboxydotrophic Archaeon Thermococcus barophilus MP

Pauline Vannier , Viggo Thor Marteinsson , Olafur Hedinn Fridjonsson , Philippe . Oger , Mohamed Jebbar
Journal of Bacteriology, 2011, 193 (6), pp.1481-1482. ⟨10.1128/JB.01490-10⟩
Article dans une revue insu-00683928v1

Pyrococcus yayanosii sp. nov.,the first obligate piezophilic hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.

Jean-Louis Birrien , Xiang Zeng , Mohamed Jebbar , Marie-Anne Cambon-Bonavita , Joël Quérellou
International Journal of Systematic and Evolutionary Microbiology, 2011, Epub ahead of print. ⟨10.1099/ijs.0.024653-0⟩
Article dans une revue hal-00609785v1

Complete Genome Sequence of the Hyperthermophilic Archaeon Thermococcus sp Strain AM4, Capable of Organotrophic Growth and Growth at the Expense of Hydrogenogenic or Sulfidogenic Oxidation of Carbon Monoxide

Philippe M. Oger , Tatyana G. Sokolova , Darya A. Kozhevnikova , Nikolay A. Chernyh , Douglas H. Bartlett
Journal of Bacteriology, 2011, 193 (24), pp.7019-7020. ⟨10.1128/JB.06259-11⟩
Article dans une revue insu-00682014v1

Complete Genome Sequence of the Obligate Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii CH1

Xu Jun , Lupeng Liu , Minjuan Xu , Philippe Oger , Fengping Wang
Journal of Bacteriology, 2011, 193 (16), pp.4297-4298. ⟨10.1128/JB.05345-11⟩
Article dans une revue insu-00683340v1
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The many ways of coping with pressure

Philippe Oger , Mohamed Jebbar
Research in Microbiology, 2010, 161 (10), pp.799-809. ⟨10.1016/j.resmic.2010.09.017⟩
Article dans une revue hal-00618586v1

Experiments and geochemical modelling of CO(2) sequestration by olivine: Potential, quantification

Bruno Garcia , V. Beaumont , Erwan Perfetti , V. Rouchon , D. Blanchet
Applied Geochemistry, 2010, 25 (9), pp.1383-1396. ⟨10.1016/j.apgeochem.2010.06.009⟩
Article dans une revue insu-00677011v1

In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure

Philippe M. Oger , Isabelle Daniel , Aude Picard
Annals of the New York Academy of Sciences, 2010, 1189, pp.113-120. ⟨10.1111/j.1749-6632.2009.05176.x⟩
Article dans une revue hal-00681774v1

The S -Adenosyl- l -Homocysteine Hydrolase Gene ahcY of Agrobacterium radiobacter K84 Is Required for Optimal Growth, Antibiotic Production, and Biocontrol of Crown Gall Disease

Ramón Penyalver , Phil M. Oger , Shengchang Su , Belén Alvarez , Carmina Salcedo
Molecular Plant-Microbe Interactions, 2009, 22 (6), pp.713-724. ⟨10.1094/MPMI-22-6-0713⟩
Article dans une revue hal-02122845v1

Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication

Stéphane Uroz , Yves Dessaux , Phil M. Oger
ChemBioChem, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩
Article dans une revue hal-02122861v1

Pyrococcus CH1, an obligate piezophilic hyperthermophile extending the upper pressure-temperature limits for life

X. Zeng , J.-L. Birrien , Y. Fouquet , G. Cherkashov , M. Jebbar
The International Society of Microbiologial Ecology Journal, 2009, pp.1 - 4
Article dans une revue hal-00406501v1
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A Rhodococcus qsdA-Encoded Enzyme Defines a Novel Class of Large-Spectrum Quorum-Quenching Lactonases

Stéphane S. Uroz , Phil M. Oger , Emilie Chapelle , Marie-Thérèse Adeline , Denis Faure
Applied and Environmental Microbiology, 2008, 74 (5), pp.1357-1366. ⟨10.1128/AEM.02014-07⟩
Article dans une revue hal-02665934v1

Micro-X-ray absorption near edge structure as a suitable probe to monitor live organisms.

Philippe M. Oger , Isabelle Daniel , Alexandre Simionovici , A. Picard
Spectrochimica Acta Part B: Atomic Spectroscopy, 2008, 63(4), pp.512-517. ⟨10.1016/j.sab.2007.12.013⟩
Article dans une revue hal-00341800v1

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.

S. Uroz , Philippe M. Oger , E. Chapelle , M.-T. Adeline , D. Faure
Applied and Environmental Microbiology, 2008, 74, pp.1357-1366
Article dans une revue hal-00342712v1

In situ monitoring of alcohol fermentation by Saccharomyces cerevisiae under high pressure by quantitative Raman spectroscopy.

A. Picard , Isabelle Daniel , Gilles Montagnac , Philippe M. Oger
Extremophiles, 2007, 11, pp.445-452
Article dans une revue hal-00342705v1

In situ monitoring by quantitative Raman spectroscopy of alcoholic fermentation by Saccharomyces cerevisiae under high pressure.

A. Picard , Isabelle Daniel , Gilles Montagnac , Philippe M. Oger
Extremophiles, 2007, 11, pp.445-452
Article dans une revue hal-00341399v1

A sensitive pressure sensor for diamond anvil cell experiments up to 2 GPa: FluoSpheres®

Aude Picard , Philippe M. Oger , Isabelle Daniel , Hervé Cardon , Gilles Montagnac
Journal of Applied Physics, 2006, 100, ⟨10.1063/1.2234821⟩
Article dans une revue hal-00093036v1
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Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T

Philippe M. Oger , Isabelle Daniel , Aude Picard
BBA - Biochimica et Biophysica Acta, 2006, 1764, pp.434-442. ⟨10.1016/j.bbapap.2005.11.009⟩
Article dans une revue hal-00093586v1

N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule.

Ludovic Vial , Caroline Cuny , Katia Gluchoff-Fiasson , Gilles Comte , Phil M. Oger
FEMS Microbiology Ecology, 2006, 58, pp.155-168. ⟨10.1111/j.1574-6941.2006.00153.x⟩
Article dans une revue hal-00119123v1

Origins of life and biochemistry under high-pressure conditions.

Isabelle Daniel , Philippe M. Oger , R. Winter
Chemical Society Reviews, 2006, 35(10), pp.858-875
Article dans une revue hal-00341807v1

Origin of life and biochemistry under high pressure-conditions.

Isabelle Daniel , Philippe M. Oger , R. Winter
Chemical Society Reviews, 2006, 35, pp.858-875
Article dans une revue hal-00342697v1

Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.

Philippe M. Oger , Isabelle Daniel , A. Picard
Biochimica et Biophysica Acta Proteins and Proteomics, 2006, 1764(3), pp.434-442
Article dans une revue hal-00341802v1

AHL-mediated quorum-sensing in Azospirillum: an exception rather than a rule.

L. Vial , C. Cuny , K. Gluchoff-Fiasson , G. Comte , Philippe M. Oger
Microbial ecology, 2006, 58, pp.155-168
Article dans une revue hal-00342700v1

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.

Stéphane Uroz , Yves Dessaux , Philippe M. Oger , Siri Ram Chhabra , Miguel Cámara
Archives of Microbiology, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩
Article dans une revue hal-00119105v1

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.

Stéphane Uroz , Siri Ram Chhabra , Miguel Cámara , Paul Williams , Philippe M. Oger
Microbiology, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩
Article dans une revue hal-00019097v1

Engineering root exudation of Lotus towards the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere.

Philippe M. Oger , H. Mansouri , X. Nesme , Y. Dessaux
Microbiol. Ecol., 2004, 47 (1), pp.96-103. ⟨10.1007/s00248-003-2012-9⟩
Article dans une revue hal-00122258v1

In situ micro X-ray absorption near edge structure study of microbiologically reduced selenite (SeO32−)

Phil M. Oger , I. Daniel , B. Cournoyer , A. Simionovici
Spectrochimica Acta Part B: Atomic Spectroscopy, 2004, 59 (10-11), pp.1681-1686. ⟨10.1016/j.sab.2004.07.021⟩
Article dans une revue hal-02123018v1

A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems

S. Teyssier-Cuvelle , Phil M. Oger , Christophe Mougel , K. Groud , S. Farrand
Microbial ecology, 2004, 48 (1), pp.10-18. ⟨10.1007/s00248-003-2023-6⟩
Article dans une revue hal-02123026v1

Agrobacterium is a definable genus of the family Rhizobiaceae

S. Farrand , Peter van Berkum , Phil M. Oger
International Journal of Systematic and Evolutionary Microbiology, 2003, 53 (5), pp.1681-1687. ⟨10.1099/ijs.0.02445-0⟩
Article dans une revue hal-02123030v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468v1

Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.

Hounayda Mansouri , Annik Petit , Phil Oger , Yves Dessaux
Applied and Environmental Microbiology, 2002, 68 (5), pp.2562-6. ⟨10.1128/AEM.68.5.2562-2566.2002⟩
Article dans une revue hal-00145331v1

Two Opines Control Conjugal Transfer of an Agrobacterium Plasmid by Regulating Expression of Separate Copies of the Quorum-Sensing Activator Gene traR

Phil M. Oger , S. Farrand
Journal of Bacteriology, 2002, 184 (4), pp.1121-1131. ⟨10.1128/jb.184.4.1121-1131.2002⟩
Article dans une revue hal-02123037v1

Importance of the O-antigen, core-region and lipid A of rhizobial lipopolysaccharides for the induction of systemic resistance in potato to Globodera pallida

Martina Reitz , Phil M. Oger , Andreas A Meyer , Karsten Niehaus , Stephen Farrand
Nematology, 2002, 4 (1), pp.73 - 79. ⟨10.1163/156854102760082221⟩
Article dans une revue hal-01759659v1

Engineering bacterial competitiveness and persistence in the phytosphere.

Michael A Savka , Yves Dessaux , Philippe M. Oger , Silvia Rossbach
Molecular Plant-Microbe Interactions, 2002, 15 (9), pp.866-74
Article dans une revue hal-00145850v1

Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system

Phil M. Oger , Stephen Farrand
Molecular Microbiology, 2001, 41 (5), pp.1173-1185. ⟨10.1046/j.1365-2958.2001.02584.x⟩
Article dans une revue hal-02123045v1

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp

M. Elasri , S. Delorme , Philippe P. Lemanceau , G. Stewart , B. Laue
Applied and Environmental Microbiology, 2001, 67 (3), pp.1198-1209
Article dans une revue hal-02671516v1

Iron-Binding Compounds from Agrobacterium spp.: Biological Control Strain Agrobacterium rhizogenes K84 Produces a Hydroxamate Siderophore

R. Penyalver , Phil M. Oger , M. Lopez , S. Farrand
Applied and Environmental Microbiology, 2001, 67 (2), pp.654-664. ⟨10.1128/AEM.67.2.654-664.2001⟩
Article dans une revue hal-02123047v1

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp.

M. Elasri , S. Delorme , P. Lemanceau , G. Stewart , B. Laue
Applied and Environmental Microbiology, 2001, 67 (3), pp.1198-209. ⟨10.1128/AEM.67.3.1198-1209.2001⟩
Article dans une revue hal-00150154v1

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid.

K. Palanichelvam , P. Oger , S. J. Clough , C. Cha , A. F. Bent
Molecular Plant-Microbe Interactions, 2000, 13 (10), pp.1081-91
Article dans une revue hal-00165069v1

The Bases of Crown Gall Tumorigenesis

J. Zhu , Phil M. Oger , B. Schrammeijer , J. Hooykaas , S. Farrand
Journal of Bacteriology, 2000, 182 (14), pp.3885-3895. ⟨10.1128/JB.182.14.3885-3895.2000⟩
Article dans une revue hal-02123051v1

Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines.

P. Oger , H. Mansouri , Y. Dessaux
Molecular Ecology, 2000, 9 (7), pp.881-90. ⟨10.1046/j.1365-294x.2000.00940.x⟩
Article dans une revue hal-00165030v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Phil Oger , Yves Dessaux , Annick Petit , Louis Gardan , Charles Manceau
Genetics Selection Evolution, 1998, 30 (Suppl), pp.S311-S321
Article dans une revue hal-00894248v1

Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer

Phil M. Oger , Kun-Soo Kim , Rebecca Sackett , Kevin Piper , Stephen Farrand
Molecular Microbiology, 1998, 27 (2), pp.277-288. ⟨10.1046/j.1365-2958.1998.00671.x⟩
Article dans une revue hal-02123057v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Philippe Oger , Yves Dessaux , A. Petit , L. Gardan , Charles Manceau
Genetics Selection Evolution, 1998, 30 (suppl. 1), pp.S311-S321
Article dans une revue hal-02698473v1

Genetically engineered plants producing opines alter their biological environment

Phil M. Oger , Annik Petit , Yves Dessaux
Nature Biotechnology, 1997, 15 (4), pp.369-372. ⟨10.1038/nbt0497-369⟩
Article dans une revue hal-02123062v1

A simple technique for direct transformation and regeneration of the diploid legume species Lotus japonicus

Phil M. Oger , Annik Petit , Yves Dessaux
Plant Science, 1996, 116 (2), pp.159-168. ⟨10.1016/0168-9452(96)04391-9⟩
Article dans une revue hal-02123064v1

The use of digoxigenin-lebbelled probes to detect DNA sequences specific for plant pathogenic bacteria

Y. Dessaux , Miena Elasri , E. Glickmann , Phil M. Oger , Annick Petit
Cellular and Molecular Biology, 1995, 41 (7), pp.993-943
Article dans une revue hal-02123170v1

“The Legacy of Pyrococcus abyssi : from 1 to 100 Thermococcales genomes”

Violette Da Cunha , Catherine Badel , P. Oger , Loïs Maignien , Ghislaine Magdelenat
The 20th MicroScope anniversary, Alexandra CALTEAU, Aurélie LAJUS, David ROCHE, David VALLENET, Sep 2023, Évry-Courcouronnes, France
Communication dans un congrès hal-04360030v1

Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils

Stéphane S. Uroz , Marc Buée , Aurélie Cébron , Wietse de Boer , Pascale P. Frey-Klett
MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France
Communication dans un congrès hal-02796164v1

Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil

Cendrella Lepleux , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett , Stéphane S. Uroz
14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark
Communication dans un congrès hal-02745200v1

Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers

Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Christelle Collignon , Wietse de Boer
Colloque FRB 2011, Sep 2011, Montpellier, France
Communication dans un congrès hal-02744770v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Philippe Oger , Yves Dessaux , A. Petit , L. Gardan , Charles Manceau
Colloque BRG/USTL. Méthodologies de gestion et de conservation des ressources génétiques, Oct 1997, Lille, France
Communication dans un congrès hal-02840574v1
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High-pressure Adaptation of Extremophiles and Biotechnological Applications

M. Salvador Castell , P. Oger , Judith Peters
Physiological and Biotechnological aspects of extremophiles, Elsevier, pp.105-122, 2020, 978-0-12-818322-9. ⟨10.1016/C2018-0-03860-8⟩
Chapitre d'ouvrage hal-02122331v1
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Vivre sous pression dans la biosphère profonde

Philippe Oger
101 secrets de l'ADN, 4, CNRS Editions, pp.151-153, 2019, 9782271123237
Chapitre d'ouvrage hal-02122323v1

Probing the Structure and Dynamics of Cells, Cell Components and Endogenous Nanoparticles Under Extreme Conditions with Neutrons

Judith Peters , Ruth Prassl , P. Oger
Biological, Physical and Technical Basics of Cell Engineering, Springer Singapore, pp.401-420, 2018
Chapitre d'ouvrage hal-02122309v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩
Chapitre d'ouvrage hal-01688921v1

Homeoviscous Adaptation of Membranes in Archaea

Phil M. Oger
High Pressure Bioscience, pp.383-403, 2015
Chapitre d'ouvrage hal-02122094v1

Petroleum: from formation to microbiology.

Bernard Ollivier , Jean Borgomano , Philippe Oger
Microbial life in the deep biosphere, De Gruyter, pp.161 -185, 2014
Chapitre d'ouvrage hal-00989881v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010
Chapitre d'ouvrage hal-02122828v1

Piezophilic Prokaryotes

Daniel Prieur , D. Bartlett , C. Kato , Ph. Oger , Mohamed Jebbar
Philippe Sébert. Comparative High Pressure Biology, Science Publishers, pp.285-322, 2010
Chapitre d'ouvrage hal-00620691v1

Impact of the deep biosphere on CO2 storage performance

Bénédicte Ménez , Sébastien Dupraz , Emmanuelle Gérard , François Guyot , Céline Rommevaux
Geotechnologien Science Reports, 9, pp.150-163, 2007, French-German Symposium on Geological storage of CO2
Chapitre d'ouvrage hal-02122968v1

Métrologie : calibrants de pression pour la gamme 0 - 2 GPA

Phil M. Oger , Jean-Claude Chervin , Olivier Grasset , Jean-Marie Perrier-Cornet
Outils et méthodes pour la recherche à haute pression, Réseau CNRS des Hautes Pressions, pp.1-30, 2005
Chapitre d'ouvrage hal-02123176v1

Agrobacterium-mediated transformation of Lotus species

Phil Oger , Yves Dessaux
P.K. Jaiwal, R.P. Singh. Applied Genetics of Leguminosae Biotechnology, Springer, pp.255-281, 2004, Focus on Biotechnology Vol. 10B
Chapitre d'ouvrage hal-00134557v1

Quorum-sensing system of Agrobacterium plasmids: Analysis and utility

Stephen Farrand , Yinping Qin , Phil M. Oger
Methods in Enzymology, pp.452-484, 2002
Chapitre d'ouvrage hal-02123042v1