Researcher identifiers

Domains

Keywords

Co-authors

Journal names

Number of documents

110

Phil Oger @ HAL


 

Education

2007 Habilitation (University of Lyon)

1995 PhD summa cum laude in Plant Pathology (Paris University X1- Orsay) 1991 MS Plant Pathology (Paris University X1- Orsay)
1991 Engineer degree in Agronomy (National Institute ofr Agronomy, Paris)

Professional experience

 

2016-present    CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon

2000-2015        CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon 

1999-2000        Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette 

1996-1999        Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA) 

Teaching

2014 -              2nd and 3rd year BS at INSA de Lyon and ENS de Lyon

2005 - 2014     4th year BS and MS level at ENS de Lyon and University of Lyon 

1992 - 1995     1st year BS at University of Paris XI-Orsay 

Teaching

2014 -
2005 - 2014 1992 - 1995

CNRS Scientist, Head Adaptation to Extreme Environment group, UMR 5240, INSA Lyon CNRS Scientist, Head Geomicrobiology group, Earth Sciences Laboratory, ENS Lyon Post-Doctoral Investigator, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette Post-Doctoral Investigator, University of Illinois, Urbana-Champaign (USA)

2nd and 3rd year BS at INSA de Lyon and ENS de Lyon
4th year BS and MS level at ENS de Lyon and University of Lyon 1st year BS at University of Paris XI-Orsay

Research interests

Research in my group aims at deciphering from the atomic to the genetic level the behavior and adaptation of Archaea in response to environmental stresses. Our aim is to explore the limits of life in the deep-biosphere, with an emphasis on the adaptation to hydrostatic pressure, temperature and salinity variations in deep-sea hydrothermal vents. Over the years we have developped the two widely accepted hypethermophilic archaea, e.g. Thermococcus barophilus and Pyrococcus yayanosii, as genetic models for the study of high-hydrostatic pressure adaptation in deep-sea hydrothermal vents. Our approaches are multi- and trans-disciplinary since we aim at understanding the physics behind the physiologic adaptation of cells. To this avail we use techniques ranging from spectral physics (Xray and Neutron diffraction and diffusion) to meta-omics (RNASeq and Proteomics, in order to track the genetic imprint of these adaptations from the cell level to the molecule.

This combination of approaches has led to two major scientific discoveries over the last two years. First, we have described the first atomistic model of of high hydrostatic pressure adaptation (Martinez Sci Rep 2016; Cario Sci Rep 2016) and described a novel membrane ultrstructure as a new adaptation strategy to high hydrostatic pressure and temperature in hyperthermohpiv Archaea (Cario Front Microbiol 2105). 


Journal articles95 documents

  • Haoqiang Shi, Qi Gan, Donghao Jiang, Yuqi Wu, Youcheng Yin, et al.. Biochemical characterization and mutational studies of the thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. International Journal of Biological Macromolecules, Elsevier, In press, ⟨10.1016/j.ijbiomac.2019.05.073⟩. ⟨hal-02130096⟩
  • Haoqiang Shi, Yanchao Huang, Qi Gan, Mianwen Rui, Hongxun Chen, et al.. Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. Applied Microbiology and Biotechnology, Springer Verlag, 2019, ⟨10.1007/s00253-019-09736-9⟩. ⟨hal-02091415⟩
  • S. Uroz, Phil M. Oger. Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]. Systematic and Applied Microbiology, Elsevier, 2019, ⟨10.1016/j.syapm.2019.03.001⟩. ⟨hal-02122345⟩
  • Y. Wang, L. Zhang, X. Zhu, Y. Li, H. Shi, et al.. Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5. Int J Biol Macromol, 2018, 117, pp.17-24. ⟨hal-02001372⟩
  • P. M. Oger. Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea. Genome Announc, 2018, 6 (8). ⟨hal-02001367⟩
  • M. Golub, N. Martinez, G. Michoud, J. Ollivier, M. Jebbar, et al.. The Effect of Crowding on Protein Stability, Rigidity, and High Pressure Sensitivity in Whole Cells. Langmuir, 2018, 34 (35), pp.10419-10425. ⟨hal-02001365⟩
  • P. M. Oger, N. Callac, C. Oger-Desfeux, S. Hughes, B. Gillet, et al.. Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin. Genome Announc, 2017, 5 (7). ⟨hal-02001357⟩
  • E. Lelièvre-Berna, B. Demé, J. Gonthier, J-P. Gonzales, J. Maurice, et al.. 700 MPa sample stick for studying liquid samples or solid-gas reactions down to 1.8 K and up to 550 K. Journal of Neutron Research, 2017, 19 (1/2), pp.77-84. ⟨hal-02001352⟩
  • F. Lormieres, P. M. Oger. Epsilonproteobacteria dominate bacterial diversity at a natural tar seep. C R Biol, 2017, 340 (4), pp.238-243. ⟨hal-02001356⟩
  • Phil M. Oger. Coping with the pressure: Microbial adaptation to high hydrostatic pressure in deep sea hydrothermal vents. Journal of Physics: Conference Series, IOP Publishing, 2017, 950, pp.032016. ⟨10.1088/1742-6596/950/3/032016⟩. ⟨hal-02122369⟩
  • Jean-Loup Cadiou, Sylvain Pichat, Victor P. Bondanese, Alexandre Soulard, Toshiyuki Fujii, et al.. Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells. Scientific Reports, Nature Publishing Group, 2017, 7, ⟨10.1038/srep44533⟩. ⟨hal-01632761⟩
  • Stéphane Uroz, P. Oger. Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.. Systematic and Applied Microbiology, Elsevier, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩. ⟨hal-01644024⟩
  • Nicolas Reina, Sophie Putman, Romain Desmarchelier, El Hadi Sari Ali, Philippe Chiron, et al.. Can a target zone safer than Lewinnek's safe zone be defined to prevent instability of total hip arthroplasties? Case-control study of 56 dislocated THA and 93 matched controls. Orthopaedics and Traumatology - Surgery and Research, Elsevier, 2017, 103 (5), pp. 657-661. ⟨10.1016/j.otsr.2017.05.015⟩. ⟨hal-01587112⟩
  • F. Albarede, P. Telouk, V. Balter, V. P. Bondanese, E. Albalat, et al.. Medical applications of Cu, Zn, and S isotope effects. Metallomics, 2016, 8 (10), pp.1056-1070. ⟨hal-02001326⟩
  • P. Oger, T. G. Sokolova, D. A. Kozhevnikova, E. A. Taranov, P. Vannier, et al.. Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate. Genome Announc, 2016, 4 (1). ⟨hal-02001341⟩
  • R. Bosmans, P. Oger, P. Ponel. Altella emilieae Lissner, 2016 (Araneae: Dictynidae) is a Junior Synonym of Chaerea maritimus Simon, 1884 and a Widespread Mediterranean Halophilous Species. Arachnology, 2016. ⟨hal-01473812⟩
  • N. Callac, P. Oger, F. Lesongeur, J. E. Rattray, P. Vannier, et al.. Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol, 2016, 66 (8), pp.3142-9. ⟨hal-02001330⟩
  • A. Cario, M. Jebbar, A. Thiel, N. Kervarec, P. M. Oger. Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus. Sci Rep, 2016, 6, pp.29483. ⟨hal-02001331⟩
  • C. Dalmasso, P. Oger, G. Selva, D. Courtine, S. L'Haridon, et al.. Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise. Syst Appl Microbiol, 2016, 39 (7), pp.440-444. ⟨hal-02001335⟩
  • C. Dalmasso, P. Oger, D. Courtine, M. Georges, K. Takai, et al.. Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures. Genome Announc, 2016, 4 (4). ⟨hal-02001334⟩
  • V. P. Bondanese, A. Lamboux, M. Simon, J. E. Lafont, E. Albalat, et al.. Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner. Metallomics, 2016, 8 (11), pp.1177-1184. ⟨hal-02001329⟩
  • C. Dalmasso, P. Oger, D. Courtine, M. Georges, K. Takai, et al.. Erratum for Dalmasso et al., Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures. Genome Announc, 2016, 4 (5). ⟨hal-02001333⟩
  • S. Uroz, P. Oger, E. Tisserand, A. Cebron, M. -P. Turpault, et al.. Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities. Scientific Reports, Nature Publishing Group, 2016, 6, ⟨10.1038/srep27756⟩. ⟨hal-01579579⟩
  • Victor Bondanese, Aline Lamboux, Mélanie Simon, Jérôme Lafont, Emmanuelle Albalat, et al.. Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner. Metallomics, Royal Society of Chemistry, 2016, 8 (11), pp.1177-1184. ⟨10.1039/c6mt00102e⟩. ⟨hal-02132068⟩
  • Natalia Guschinskaya, Romain Brunel, Maxime Tourte, Gina L. Lipscomb, Michael W. W. Adams, et al.. Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation. Scientific Reports, Nature Publishing Group, 2016, 6, pp.36711. ⟨10.1038/srep36711⟩. ⟨hal-01917847⟩
  • Nicolas Martinez, G. Michoud, A. Cario, J. Ollivier, Bruno Franzetti, et al.. High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes. Scientific Reports, Nature Publishing Group, 2016, 6, ⟨10.1038/srep32816⟩. ⟨hal-01427793⟩
  • J. Braschi, P. Ponel, E. Krebs, Hervé Jourdan, A. Passetti, et al.. Eradications simultanées du rat noir (Rattus rattus) et des griffes de sorcière (Carpobrotus spp.) sur l'île de Bagaud (parc national de Port-Cros, Provence, France) : résultats préliminaires des conséquences sur les communautés d'arthropodes. Revue d'Ecologie, Terre et Vie, Société nationale de protection de la nature, 2015, 70, pp.91--98. ⟨hal-01452461⟩
  • Vincent Grossi, Anaïs Cario, Philippe Schaeffer, Philippe M. Oger. Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus . Frontiers in microbiology, Frontiers Research Foundation, 2015, Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus, 6, ⟨10.3389/fmicb.2015.01152⟩. ⟨hal-01366758⟩
  • Margaux Meslé, Gilles Dromart, Frank Haeseler, Philippe Oger. Classes of organic molecules targeted by a methanogenic microbial consortium grown on sedimentary rocks of various maturities. Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, ⟨10.3389/fmicb.2015.00589⟩. ⟨hal-01256322⟩
  • Gilles Dromart, Charlotte Mesle Margaux; Periot, Philippe Oger. Methanogenic microbial community of the Eastern Paris Basin: Potential for energy production from organic-rich shales . International Journal of Coal Geology, Elsevier, 2015, 149, pp.67-76. ⟨10.1016/j.coal.2015.07.002⟩. ⟨hal-01360887⟩
  • Anaïs Cario, Alex Mizgier, Axel Thiel, Mohamed Jebbar, Phil M. Oger. Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus. Biochimie, Elsevier, 2015, 118, pp.286-293. ⟨10.1016/j.biochi.2015.05.011⟩. ⟨hal-02122725⟩
  • Stéphane Uroz, Phil Oger. Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability. Genome Announcements, American Society for Microbiology, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩. ⟨hal-01577943⟩
  • Mohamed Jebbar, Bruno Franzetti, Eric Girard, Philippe Oger. Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.. Extremophiles, Springer Verlag, 2015, 19 (4), pp.721-40. ⟨hal-01199266⟩
  • Pauline Vannier, Grégoire Michoud, Phil M. Oger, Viggó þór Marteinsson, Mohamed Jebbar. Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions. Research in Microbiology, Elsevier, 2015, 166 (9), pp.717-725. ⟨10.1016/j.resmic.2015.07.006⟩. ⟨hal-02122706⟩
  • Anaïs Cario, Florence Lormières, Xiao Xiang, Phil M. Oger. High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus. Research in Microbiology, Elsevier, 2015, 166 (9), pp.710-716. ⟨10.1016/j.resmic.2015.07.004⟩. ⟨hal-02122717⟩
  • Judith Peters, Nicolas Martinez, Grégoire Michoud, Anaïs Cario, Bruno Franzetti, et al.. Deep sea microbes probed by incoherent neutron scattering under high hydrostatic pressure.. Zeitschrift für Physikalische Chemie, Oldenbourg Verlag, 2014, 228, pp.1121-1133. ⟨hal-01149032⟩
  • Phil M. Oger, Anaïs Cario. La vie sous pression des microorganismes piézophiles. Biologie Aujourd'hui, EDP sciences, 2014, 208 (3), pp.193-206. ⟨10.1051/jbio/2014023⟩. ⟨hal-02122751⟩
  • Phil M. Oger, Corinne Dorel. iGEM Europe 2013: Des gènes et des machines. Biofutur, Elsevier - Cachan : Lavoisier, 2013, 349, pp.50-51. ⟨hal-02122782⟩
  • Anaïs Cario, Phil M. Oger. Adaptation of the membrane in Archaea. Biophysical Chemistry, Elsevier, 2013, 183, pp.42-56. ⟨10.1016/j.bpc.2013.06.020⟩. ⟨hal-02122759⟩
  • M. Meslé, C. Périot, G. Dromart, Phil M. Oger. Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales. Journal of Applied Microbiology, Wiley, 2013, 114 (1), pp.55-70. ⟨10.1111/jam.12015⟩. ⟨hal-02122792⟩
  • Margaux Mesle, Gilles Dromart, Phil M. Oger. Microbial methanogenesis in subsurface oil and coal. Research in Microbiology, Elsevier, 2013, 164 (9), pp.959-972. ⟨10.1016/j.resmic.2013.07.004⟩. ⟨hal-02122787⟩
  • Eric Prestel, Christophe Regeard, James Andrews, Philippe M. Oger, Michael Dubow. A novel bacteriophage morphotype with a ribbon-like structure at the tail extremity. Research Journal of Microbiology, 2012, 7 (1), pp.75. ⟨10.3923/jm.2012.75.81⟩. ⟨hal-00714242⟩
  • Philippe Oger, Bruno Franzetti. Des microbes repoussent les limites de la vie. Biofutur, Elsevier - Cachan : Lavoisier, 2012, pp.36-39. ⟨hal-00829758⟩
  • C. Lepleux, M. Turpault, Phil M. Oger, P. Frey-Klett, S. Uroz. Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩. ⟨hal-02122800⟩
  • Stéphane Uroz, P. Oger, Emmanuelle Morin, P. Frey-Klett. Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩. ⟨hal-01268355⟩
  • Phil M. Oger. Methanization of fossil fuel: a possible sustainable future energy source for mankind. Fermentation, MDPI, 2012, 1, pp.e110. ⟨hal-02122818⟩
  • Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne A Goodwin, et al.. Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (21), pp.5974-5. ⟨10.1128/JB.01430-12⟩. ⟨hal-00773159⟩
  • Jean-Louis Birrien, Xiang Zeng, Mohamed Jebbar, Marie-Anne Cambon-Bonavita, Joël Quérellou, et al.. Pyrococcus yayanosii sp. nov.,the first obligate piezophilic hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2011, Epub ahead of print. ⟨10.1099/ijs.0.024653-0⟩. ⟨hal-00609785⟩
  • Anne-Marie Aucour, Sylvain Pichat, M. R. Macnair, Philippe Oger. Fractionation of Stable Zinc Isotopes in the Zinc Hyperaccumulator Arabidopsis halleri and Nonaccumulator Arabidopsis petraea. Environmental Science and Technology, American Chemical Society, 2011, 45 (21), pp.9212-9217. ⟨10.1021/es200874x⟩. ⟨insu-00683310⟩
  • Pauline Vannier, Viggo Thor Marteinsson, Olafur Hedinn Fridjonsson, Philippe Oger, Mohamed Jebbar. Complete Genome Sequence of the Hyperthermophilic, Piezophilic, Heterotrophic, and Carboxydotrophic Archaeon Thermococcus barophilus MP. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (6), pp.1481-1482. ⟨10.1128/JB.01490-10⟩. ⟨insu-00683928⟩
  • Philippe Oger, Tatyana G. Sokolova, Darya A. Kozhevnikova, Nikolay A. Chernyh, Douglas H. Bartlett, et al.. Complete Genome Sequence of the Hyperthermophilic Archaeon Thermococcus sp Strain AM4, Capable of Organotrophic Growth and Growth at the Expense of Hydrogenogenic or Sulfidogenic Oxidation of Carbon Monoxide. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (24), pp.7019-7020. ⟨10.1128/JB.06259-11⟩. ⟨insu-00682014⟩
  • Xu Jun, Lupeng Liu, Minjuan Xu, Philippe Oger, Fengping Wang, et al.. Complete Genome Sequence of the Obligate Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii CH1. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (16), pp.4297-4298. ⟨10.1128/JB.05345-11⟩. ⟨insu-00683340⟩
  • A. Picard, Isabelle Daniel, D. Testemale, I. Kieffer, P. Bleuet, et al.. Monitoring microbial redox transformations of metal and metalloid elements under high pressure using in situ X-ray absorption spectroscopy. Geobiology, Wiley, 2011, 9 (2), pp.196-204. ⟨10.1111/j.1472-4669.2010.00270.x⟩. ⟨hal-00659828⟩
  • Stéphane Uroz, Philippe Oger, Cendrella Lepleux, Christelle Collignon, Pascale Frey-Klett, et al.. Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems. Research in Microbiology, Elsevier, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩. ⟨insu-00682028⟩
  • Bruno Garcia, V. Beaumont, Erwan Perfetti, V. Rouchon, D. Blanchet, et al.. Experiments and geochemical modelling of CO(2) sequestration by olivine: Potential, quantification. Applied Geochemistry, Elsevier, 2010, 25 (9), pp.1383-1396. ⟨10.1016/j.apgeochem.2010.06.009⟩. ⟨insu-00677011⟩
  • Philippe M. Oger, Isabelle Daniel, Aude Picard. In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure. Annals of the New York Academy of Sciences, Wiley, 2010, 1189, pp.113-120. ⟨10.1111/j.1749-6632.2009.05176.x⟩. ⟨hal-00681774⟩
  • A. Picard, Isabelle Daniel, Philippe Oger, Denis Testemale, Jean-Louis Hazemann. Microbial selenium and iron reduction under high pressure. Geochimica et Cosmochimica Acta, Elsevier, 2010, 74, pp.A816. ⟨insu-00681531⟩
  • Philippe Oger, Mohamed Jebbar. The many ways of coping with pressure. Research in Microbiology, Elsevier, 2010, 161 (10), pp.799-809. ⟨10.1016/j.resmic.2010.09.017⟩. ⟨hal-00618586⟩
  • X. Zeng, J.-L. Birrien, Y. Fouquet, G. Cherkashov, M. Jebbar, et al.. Pyrococcus CH1, an obligate piezophilic hyperthermophile extending the upper pressure-temperature limits for life. The ISME journal, International Society for Microbial Ecology 2009, pp.1 - 4. ⟨hal-00406501⟩
  • Stéphane Uroz, Yves Dessaux, Phil M. Oger. Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication. ChemBioChem, Wiley-VCH Verlag, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩. ⟨hal-02122861⟩
  • Ramón Penyalver, Phil M. Oger, Shengchang Su, Belén Alvarez, Carmina Salcedo, et al.. The S -Adenosyl- l -Homocysteine Hydrolase Gene ahcY of Agrobacterium radiobacter K84 Is Required for Optimal Growth, Antibiotic Production, and Biocontrol of Crown Gall Disease. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2009, 22 (6), pp.713-724. ⟨10.1094/MPMI-22-6-0713⟩. ⟨hal-02122845⟩
  • S. Uroz, Philippe Oger, E. Chapelle, M.-T. Adeline, D. Faure, et al.. A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.. Applied and Environmental Microbiology, American Society for Microbiology, 2008, 74, pp.1357-1366. ⟨hal-00342712⟩
  • Philippe Oger, Isabelle Daniel, Alexandre Simionovici, A. Picard. Micro-X-ray absorption near edge structure as a suitable probe to monitor live organisms.. Spectrochimica Acta Part B: Atomic Spectroscopy, Elsevier, 2008, 63(4), pp.512-517. ⟨10.1016/j.sab.2007.12.013⟩. ⟨hal-00341800⟩
  • A. Picard, Isabelle Daniel, Gilles Montagnac, Philippe Oger. In situ monitoring by quantitative Raman spectroscopy of alcoholic fermentation by Saccharomyces cerevisiae under high pressure.. Extremophiles, Springer Verlag, 2007, 11, pp.445-452. ⟨hal-00341399⟩
  • A. Picard, Isabelle Daniel, Gilles Montagnac, Philippe Oger. In situ monitoring of alcohol fermentation by Saccharomyces cerevisiae under high pressure by quantitative Raman spectroscopy.. Extremophiles, Springer Verlag, 2007, 11, pp.445-452. ⟨hal-00342705⟩
  • Philippe Oger, Isabelle Daniel, Aude Picard. Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T. Biochimica et biophysica acta, 2006, 1764, pp.434-442. ⟨10.1016/j.bbapap.2005.11.009⟩. ⟨hal-00093586⟩
  • Stéphane Uroz, Yves Dessaux, Philippe Oger, Siri Ram Chhabra, Miguel Cámara, et al.. N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.. Archives of Microbiology, Springer Verlag, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩. ⟨hal-00119105⟩
  • Isabelle Daniel, Philippe Oger, R. Winter. Origins of life and biochemistry under high-pressure conditions.. Chemical Society Reviews, Royal Society of Chemistry, 2006, 35(10), pp.858-875. ⟨hal-00341807⟩
  • Isabelle Daniel, Philippe Oger, R. Winter. Origin of life and biochemistry under high pressure-conditions.. Chemical Society Reviews, Royal Society of Chemistry, 2006, 35, pp.858-875. ⟨hal-00342697⟩
  • L. Vial, C. Cuny, K. Gluchoff-Fiasson, G. Comte, Philippe Oger, et al.. AHL-mediated quorum-sensing in Azospirillum: an exception rather than a rule.. Microbial Ecology, Springer Verlag, 2006, 58, pp.155-168. ⟨hal-00342700⟩
  • Philippe Oger, Isabelle Daniel, A. Picard. Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.. Biochimica et Biophysica Acta Proteins and Proteomics, Elsevier, 2006, 1764(3), pp.434-442. ⟨hal-00341802⟩
  • Ludovic Vial, Caroline Cuny, Katia Gluchoff-Fiasson, Gilles Comte, Phil M. Oger, et al.. N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule.. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58, pp.155-168. ⟨10.1111/j.1574-6941.2006.00153.x⟩. ⟨hal-00119123⟩
  • Ludovic Vial, Caroline Cuny, Katia Gluchoff-Fiasson, Gilles Comte, Philippe Oger, et al.. N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, pp.155-168. ⟨hal-00112574⟩
  • Aude Picard, Philippe Oger, Isabelle Daniel, Hervé Cardon, Gilles Montagnac, et al.. A sensitive pressure sensor for diamond anvil cell experiments up to 2 GPa: FluoSpheres®. Journal of Applied Physics, American Institute of Physics, 2006, 100, ⟨10.1063/1.2234821⟩. ⟨hal-00093036⟩
  • Stéphane Uroz, Siri Ram Chhabra, Miguel Cámara, Paul Williams, Philippe Oger, et al.. N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.. Microbiology, Microbiology Society, 2005, 151, pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩. ⟨hal-00019097⟩
  • Philippe Oger, H. Mansouri, X. Nesme, Y. Dessaux. Engineering root exudation of Lotus towards the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere.. Microbiol. Ecol., 2004, 47 (1), pp.96-103. ⟨10.1007/s00248-003-2012-9⟩. ⟨hal-00122258⟩
  • S. Teyssier-Cuvelle, Phil M. Oger, C. Mougel, K. Groud, S. Farrand, et al.. A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems. Microbial Ecology, Springer Verlag, 2004, 48 (1), pp.10-18. ⟨10.1007/s00248-003-2023-6⟩. ⟨hal-02123026⟩
  • Phil M. Oger, I. Daniel, B. Cournoyer, A. Simionovici. In situ micro X-ray absorption near edge structure study of microbiologically reduced selenite (SeO32−). Spectrochimica Acta Part B: Atomic Spectroscopy, Elsevier, 2004, 59 (10-11), pp.1681-1686. ⟨10.1016/j.sab.2004.07.021⟩. ⟨hal-02123018⟩
  • S. Farrand, Peter Van Berkum, Phil M. Oger. Agrobacterium is a definable genus of the family Rhizobiaceae. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2003, 53 (5), pp.1681-1687. ⟨10.1099/ijs.0.02445-0⟩. ⟨hal-02123030⟩
  • Stéphane Uroz, Cathy d'Angelo-Picard, Aurélien Carlier, Miena Elasri, Carine Sicot, et al.. Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.. Microbiology, Microbiology Society, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩. ⟨hal-00135468⟩
  • Martina Reitz, Phil M. Oger, Andreas Meyer, Karsten Niehaus, Stephen Farrand, et al.. Importance of the O-antigen, core-region and lipid A of rhizobial lipopolysaccharides for the induction of systemic resistance in potato to Globodera pallida. Nematology, Brill Academic Publishers, 2002, 4 (1), pp.73 - 79. ⟨10.1163/156854102760082221⟩. ⟨hal-01759659⟩
  • Hounayda Mansouri, Annik Petit, Phil Oger, Yves Dessaux. Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.. Applied and Environmental Microbiology, American Society for Microbiology, 2002, 68 (5), pp.2562-6. ⟨10.1128/AEM.68.5.2562-2566.2002⟩. ⟨hal-00145331⟩
  • Michael A Savka, Yves Dessaux, Philippe Oger, Silvia Rossbach. Engineering bacterial competitiveness and persistence in the phytosphere.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2002, 15 (9), pp.866-74. ⟨hal-00145850⟩
  • Phil M. Oger, S. Farrand. Two Opines Control Conjugal Transfer of an Agrobacterium Plasmid by Regulating Expression of Separate Copies of the Quorum-Sensing Activator Gene traR. Journal of Bacteriology, American Society for Microbiology, 2002, 184 (4), pp.1121-1131. ⟨10.1128/jb.184.4.1121-1131.2002⟩. ⟨hal-02123037⟩
  • Phil M. Oger, Stephen Farrand. Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system. Molecular Microbiology, Wiley, 2001, 41 (5), pp.1173-1185. ⟨10.1046/j.1365-2958.2001.02584.x⟩. ⟨hal-02123045⟩
  • M. Elasri, S. Delorme, P. Lemanceau, G. Stewart, B. Laue, et al.. Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp.. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (3), pp.1198-209. ⟨10.1128/AEM.67.3.1198-1209.2001⟩. ⟨hal-00150154⟩
  • R. Penyalver, Phil M. Oger, M. Lopez, S. Farrand. Iron-Binding Compounds from Agrobacterium spp.: Biological Control Strain Agrobacterium rhizogenes K84 Produces a Hydroxamate Siderophore. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (2), pp.654-664. ⟨10.1128/AEM.67.2.654-664.2001⟩. ⟨hal-02123047⟩
  • P. Oger, H. Mansouri, Y. Dessaux. Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines.. Molecular Ecology, Wiley, 2000, 9 (7), pp.881-90. ⟨10.1046/j.1365-294x.2000.00940.x⟩. ⟨hal-00165030⟩
  • K. Palanichelvam, P. Oger, S. J. Clough, C. Cha, A. F. Bent, et al.. A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2000, 13 (10), pp.1081-91. ⟨hal-00165069⟩
  • J. Zhu, Phil M. Oger, B. Schrammeijer, J. Hooykaas, S. Farrand, et al.. The Bases of Crown Gall Tumorigenesis. Journal of Bacteriology, American Society for Microbiology, 2000, 182 (14), pp.3885-3895. ⟨10.1128/JB.182.14.3885-3895.2000⟩. ⟨hal-02123051⟩
  • Phil M. Oger, Kun-Soo Kim, Rebecca Sackett, Kevin Piper, Stephen Farrand. Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer. Molecular Microbiology, Wiley, 1998, 27 (2), pp.277-288. ⟨10.1046/j.1365-2958.1998.00671.x⟩. ⟨hal-02123057⟩
  • Phil Oger, Yves Dessaux, Annick Petit, Louis Gardan, Charles Manceau, et al.. Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations. Genetics Selection Evolution, BioMed Central, 1998, 30 (Suppl), pp.S311-S321. ⟨hal-00894248⟩
  • Phil M. Oger, Annik Petit, Yves Dessaux. Genetically engineered plants producing opines alter their biological environment. Nature Biotechnology, Nature Publishing Group, 1997, 15 (4), pp.369-372. ⟨10.1038/nbt0497-369⟩. ⟨hal-02123062⟩
  • Phil M. Oger, Annik Petit, Yves Dessaux. A simple technique for direct transformation and regeneration of the diploid legume species Lotus japonicus. Plant Science, Elsevier, 1996, 116 (2), pp.159-168. ⟨10.1016/0168-9452(96)04391-9⟩. ⟨hal-02123064⟩
  • Y. Dessaux, Miena Elasri, E. Glickmann, Phil M. Oger, Annick Petit, et al.. The use of digoxigenin-lebbelled probes to detect DNA sequences specific for plant pathogenic bacteria. Cellular and Molecular Biology, R. Wegmann, 1995, 41 (7), pp.993-943. ⟨hal-02123170⟩

Book sections12 documents

  • Phil M. Oger. Vivre sous pression dans la biosphère profonde. 101 secrets de l'ADN, A paraître. ⟨hal-02122323⟩
  • M. Salvador Castell, Phil M. Oger, Judith Peters. High-pressure Adaptation of Extremophiles and Biotechnological Applications. Physiological and Biotechnological aspects of extremophiles, In press. ⟨hal-02122331⟩
  • Judith Peters, Ruth Prassl, Phil M. Oger. Probing the Structure and Dynamics of Cells, Cell Components and Endogenous Nanoparticles Under Extreme Conditions with Neutrons. Biological, Physical and Technical Basics of Cell Engineering, Springer Singapore, pp.401-420, 2018. ⟨hal-02122309⟩
  • Stéphane Uroz, Phil M. Oger. Screening for N-AHSL-Based-Signaling Interfering Enzymes. METAGENOMICS: METHODS AND PROTOCOLS, 1539, Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩. ⟨hal-01688921⟩
  • Phil M. Oger. Homeoviscous Adaptation of Membranes in Archaea. High Pressure Bioscience, pp.383-403, 2015. ⟨hal-02122094⟩
  • Bernard Ollivier, Jean Borgomano, Philippe Oger. Petroleum: from formation to microbiology.. Microbial life in the deep biosphere, De Gruyter, pp.161 -185, 2014. ⟨hal-00989881⟩
  • Daniel Prieur, D. Bartlett, C. Kato, Ph. Oger, Mohamed Jebbar. Piezophilic Prokaryotes. Philippe Sébert. Comparative High Pressure Biology, Science Publishers, pp.285-322, 2010. ⟨hal-00620691⟩
  • Phil M. Oger, Stéphane Uroz. Screening for N-AHSL-Based-Signaling Interfering Enzymes. Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010. ⟨hal-02122828⟩
  • Bénédicte Ménez, S Dupraz, Emmanuelle Gérard, François Guyot, Céline Rommevaux, et al.. Impact of the deep biosphere on CO2 storage performance. Geotechnologien Science Reports, 9, pp.150-163, 2007, French-German Symposium on Geological storage of CO2. ⟨hal-02122968⟩
  • Phil M. Oger, Jean-Claude Chervin, Olivier Grasset, Jean-Marie Perrier-Cornet. METROLOGIE : CALIBRANTS DE PRESSION POUR LA GAMME 0 - 2 GPA. Outils et méthodes pour la recherche à haute pression, Réseau CNRS des Hautes Pressions, pp.1-30, 2005. ⟨hal-02123176⟩
  • Phil Oger, Yves Dessaux. Agrobacterium-mediated transformation of Lotus species. P.K. Jaiwal, R.P. Singh. Applied Genetics of Leguminosae Biotechnology, Springer, pp.255-281, 2004, Focus on Biotechnology Vol. 10B. ⟨hal-00134557⟩
  • Stephen Farrand, Yinping Qin, Phil M. Oger. Quorum-sensing system of Agrobacterium plasmids: Analysis and utility. Methods in Enzymology, pp.452-484, 2002. ⟨hal-02123042⟩

Patents3 documents

  • Phil M. Oger, Gilles Dromart. METHOD FOR PRODUCING METHANE GAS. France, Patent n° : WO2011089151. 2011. ⟨hal-02123181⟩
  • Denis Blanchet, Gilles Dromart, F. Haeseler, Phil M. Oger. Integrated method of producing calcite and biomass using cyanobacteria for energy valorization and mineral sequestration of co2. France, Patent n° : US20140099692A1. 2010. ⟨hal-02122741⟩
  • Phil M. Oger, Gilles Dromart. Procédé de production de gaz méthane. France, N° de brevet: FR 2 955 355. 2010. ⟨hal-02123180⟩