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Pierrick Haffray

26
Documents
Identifiants chercheurs

Présentation

After 3 years as biologist in the INRA-Ifremer experimental station of marine salmonids (SEMII, Camaret, France) and in the rainbow trout companies Pisciculture Bellet (Angoulême, France) and Truite de Bretagne (Morlaix, France), I joined (1990) the French association of poultry and aquaculture breeders (SYSAAF, Rennes, France) to develop first commercial breeding programs in the French aquaculture, primarily in salmonids as rainbow trout or charrs, followed by marine fishes as sea bass, sea bream or meagre (1992), sturgeons (1996), Pacific or flat oyster and clam (2001) and shrimps (2009). I'm now managing a team of 6 geneticist and 3 PhD students at the Aquaculture section of SYSAAF that advise 25 breeding companies selecting 18 aquaculture species in France and in Madagascar, Mozambique, Mexico, Thailand and in the past in Indonesia. My main research interests were the adaptation of principles of domestication and genetic selection to aquaculture species in using DNA-parentage assignment in combining mass and sib-selection, the development of high through put technologies to phenotype quality traits (micro-wave, artificial vision, ultrasound, MRI, RMN), the optimisation of gametes collection and larval conservation and cryoconservation, the monosexing and the triploidisation and recently (since 2014) the improvement of disease resistances to nine different diseases based on challenge tests (OHsV1, IPN, VHS, VNN, F. psychrophilum, P. piscicidae, E. tarda, V. harveyi, V. tapetis) and sib selection. My current primary research interests are the development and the application of genomic tools in genomic selection in different species (rainbow trout, sea bass, sea bream, Pacific oyster, white leg shrimp), the application of spectrometry (NIR, Raman) to target new traits as fatty acid composition to improve aquaculture nutritional value and since the two years the breeding of pearl oyster. Past Board member of the European Forum for Farm Animal Breeders (EFFAB), the European platform on Farm Animal Breeding and REproduction (FABRE) and the Labogena genotyping laboratory, I'm co-authored over 100 scientific publications and I was awarded (2019) by the French Academy of Agriculture for my inputs in the development of breeding programs in aquaculture.

Publications

anastasia-bestin
"mathilde-dupont-nivet"
Image document

How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture, 2020, 519, pp.734877. ⟨10.1016/j.aquaculture.2019.734877⟩
Article dans une revue hal-03150887v1

Genetic architecture and genomic selection of female reproduction traits in rainbow trout

J. D’ambrosio , Romain Morvezen , S. Brard-Fudulea , Anastasia Bestin , A. Acin Perez
BMC Genomics, 2020, 21 (1), pp.1-14. ⟨10.1186/s12864-020-06955-7⟩
Article dans une revue hal-02938176v1
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Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding

Jonathan D’ambrosio , Florence Phocas , Pierrick Haffray , Anastasia Bestin , Sophie Brard-Fudulea
Genetics Selection Evolution, 2019, 51 (1), pp.26. ⟨10.1186/s12711-019-0468-4⟩
Article dans une revue hal-02151750v1
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First evidence of realized selection response on fillet yield in Rainbow trout Oncorhynchus mykiss, Using Sib selection or based on correlated ultrasound measurements

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamellou
Frontiers in Genetics, 2019, 10, pp.1-13. ⟨10.3389/fgene.2019.01225⟩
Article dans une revue hal-02627462v1

How to genetically increase fillet yield in fish: New insights from simulations based on field data

Clémence Fraslin , Mathilde Dupont-Nivet , Pierrick Haffray , Anastasia Bestin , Marc Vandeputte
Aquaculture, 2018, 486, pp.175-183. ⟨10.1016/j.aquaculture.2017.12.012⟩
Article dans une revue hal-01674984v1

How to genetically increase fillet yield in fish: relevant genetic parameters and methods for the estimation of genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Communication dans un congrès hal-03187446v1
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Development of genomic predictions for female reproduction traits in rainbow trout (Oncorhynchus mykiss)

Jonathan d'Ambrosio , Romain Morvezen , S. Brard-Fudulea , Anastasia Bestin , Pierrick Haffray
Gordon Research conference - Quantitative genetics and genomics, Feb 2019, Lucca, Italy
Communication dans un congrès hal-02787972v1

Intégration de caractères de résistance à cinq pathologies dans les schémas de sélection commerciale de truite, bar et daurade

Anastasia Bestin , Yoannah François , Thierry Morin , Mathilde Dupont-Nivet , Marc Vandeputte
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02264929v1

Interaction génotype x aliment: que sait-on, où va-t-on ?

Marc Vandeputte , Pierrick Haffray , Anastasia Bestin , François Allal , Mathilde Dupont-Nivet
Journée du SFAM, Mar 2019, Montpellier, France
Communication dans un congrès hal-03187439v1

Successful realized selection response for fillet yield in rainbow trout Oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sébastien Courant
World Aquaculture 2018, European Aquaculture Society (EAS)., Aug 2019, Montpellier, France
Communication dans un congrès hal-02264916v1
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Factors of variation of genomic selection accuracy for female reproduction traits with a constant reference population size of rainbow trouts

Jonathan d'Ambrosio , Romain Morvezen , S. Brard-Fudulea , Anastasia Bestin , Pierrick Haffray
Gordon Research Conference - Quantitative genetics and genomics, Feb 2019, Lucca, Italy
Communication dans un congrès hal-02788345v1

Réponse à la sélection sur le rendement de filet chez la truite arc-en-ciel

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamelou
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02734410v1

Genetic parameters of resistance to gastroenteritis (rtge) and rainbow trout fry syndrome (rtfs) in rainbow trout oncorhynchus mykiss and their genetic correlations with production traits

Pierrick Haffray , Anastasia Bestin , Florian Enez , Sébastien Courant , Daniel Guemene
World Aquaculture 2018, Aug 2018, Montpellier, France
Communication dans un congrès hal-02738108v1
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A first demonstration of realized selection response for fillet yield in fish, in rainbow trout oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sebastien Courant
13. International Symposium for Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Communication dans un congrès hal-02264933v1
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Heterogeneity of genetic diversity throughout the genome in rainbow trout populations

Jonathan d'Ambrosio , Florence Phocas , Pierrick Haffray , Edwige Quillet , Anastasia Bestin
International symposium of Genetics in Aquaculture, International Association for Genetics in Aquaculture (IAGA). INT., Jul 2018, Cairns, Australia
Communication dans un congrès hal-02735029v1

Genomic estimates of diversity between and within french rainbow trout populations

J. d'Ambrosio , Florence Phocas , Pierrick Haffray , Edwige Quillet , Anastasia Bestin
Aqua 2018 - World Aquaculture Society Meeting, Aug 2018, Montpellier, France
Communication dans un congrès hal-02193895v1
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Peut-on sélectionner sur le rendement de filet chez les poissons ? (et chez le bar en particulier)

Marc Vandeputte , Clémence Fraslin , Jérôme Bugeon , François Allal , Antonio Puledda
Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France
Communication dans un congrès hal-03155369v1

Can we select fish for improved fillet yield? A simulation study using base data from three different species

Clémence Fraslin , Mathilde Dupont-Nivet , Anastasia Bestin , Pierrick Haffray , Marc Vandeputte
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom
Communication dans un congrès hal-01605575v1

How can we select for fillet yield in fish ? A simulation study

Clémence Fraslin , Mathilde Dupont-Nivet , Anastasia Bestin , Pierrick Haffray , Marc Vandeputte
Fish Breeders' Round Table, Jun 2016, Tromso, Norway
Communication dans un congrès hal-02799957v1
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Genotype by diet interactions on growth and processing traits in rainbow trout ([i]Oncorhynchus mykiss[/i]), European sea bass ([i]Dicentrarchus labrax[/i]), gilthead sea bream ([i]Sparus aurata[/i]) and meagre [i](Argyrosomus regius)[/i] fed diets with almost complete substitution of both fish meal and fish oil by vegetal ingredients

Anastasia Bestin , Mathilde Dupont-Nivet , Pierrick Haffray , Françoise Médale , Edwige Quillet
10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada
Communication dans un congrès hal-01194150v1
Image document

Development of genomic predictions for female reproduction traits in rainbow trout (Oncorhynchus mykiss)

Jonathan D’ambrosio , Romain Morvezen , Sophie Brard-Fudulea , Anastasia Bestin , Pierrick Haffray
Gordon Research Conference on Quantitative Genetics and Genomics, Feb 2019, Lucca (Barga), Italy
Poster de conférence hal-04386578v1

Déterminisme génétique et sélection génomique des caractères de reproduction femelle chez la truite arc-en-ciel

J. d'Ambrosio , Romain Morvezen , A. Perez , S. Brard-Fudulea , Anastasia Bestin
6. Journées de la Recherche Piscicole, Jul 2019, Paris, France. , 2019
Poster de conférence hal-02193908v1

Estimation de la diversité génétique entre et intra lignées françaises de truite arc en ciel

Jonathan d'Ambrosio , Florence Phocas , Pierrick Haffray , Edwige Quillet , Anastasia Bestin
6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. , 2019, Journées de la Recherche Filière Piscicole
Poster de conférence hal-02264930v1
Image document

Factors of variation of genomic selection accuracy for female reproduction traits with a constant reference population size of rainbow trouts

Jonathan D’ambrosio , Romain Morvezen , Sophie Brard-Fudulea , Anastasia Bestin , Pierrick Haffray
Gordon Research Conference on Quantitative Genetics and Genomics, Feb 2019, Lucca (Barga), France
Poster de conférence hal-04386586v1

Variabilité génétique de la capacité de quatre espèces piscicoles à utiliser de l'aliment à forts taux de végétaux

Anastasia Bestin , Mathilde Dupont-Nivet , Françoise Médale , Edwige Quillet , Marc Vandeputte
4. Journées de la Recherche Filière Piscicole, Jul 2014, Paris, France. , 2014, 4èmes Journées de la Recherche Filière Piscicole
Poster de conférence hal-01193851v1

Comparative additive genetic basis of high feed substitution by plant ingredients in four major fish species farmed in temperate and southern Europe

Anastasia Bestin , Mathilde Dupont-Nivet , Françoise Médale , Edwige Quillet , Marc Vandeputte
Aquaculture Europe 2014, Oct 2014, Saint Sébastien, Spain. , pp.136, 2014, Adding value. Abstracts
Poster de conférence hal-01193981v1