Liste des publications

Pierre Poulain, Jean‐michel Camadro. AutoClassWeb: a simple web interface for Bayesian clustering of omics data. BMC Research Notes, BioMed Central, 2022, 15 (1), pp.241. ⟨10.1186/s13104-022-06129-6⟩. ⟨hal-03718406⟩

Fabrizio d'Ortenzio, V. Taillandier, Hervé Claustre, Laurent Coppola, P. Conan, et al.. BGC‐Argo Floats Observe Nitrate Injection and Spring Phytoplankton Increase in the Surface Layer of Levantine Sea (Eastern Mediterranean). Geophysical Research Letters, American Geophysical Union, 2021, 48 (8), ⟨10.1029/2020GL091649⟩. ⟨hal-03217440⟩

Nicolas Sénécaut, Gelio Alves, Hendrik Weisser, Laurent Lignières, Samuel Terrier, et al.. Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy. Journal of Proteome Research, American Chemical Society, 2021, 20 (3), pp.1476-1487. ⟨10.1021/acs.jproteome.0c00478⟩. ⟨hal-03266586⟩

Hubert Santuz, Amélie Bacle, Pierre Poulain, Patrick F J Fuchs. buildH: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters. Journal of Open Source Software, Open Journals, 2021, 6 (65), pp.3521. ⟨10.21105/joss.03521⟩. ⟨hal-03481632⟩

Jean-Michel Camadro, Pierre Poulain. AutoClassWrapper: a Python wrapper for AutoClass C classification. Journal of Open Source Software, Open Journals, 2019, 4 (39), pp.1390. ⟨10.21105/joss.01390⟩. ⟨hal-02389319⟩

Thomas Denecker, William Durand, Julien Maupetit, Charles Hébert, Jean-Michel Camadro, et al.. Pixel: a content management platform for quantitative omics data. PeerJ, PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩. ⟨hal-03100146⟩

Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, et al.. Meet-U: educating through research immersion. PLoS Computational Biology, Public Library of Science, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩. ⟨hal-01722019⟩

C. Guicheteau, L. Boyer, D. A. Somé, J. Leveque, P. Poulain, et al.. Tolérance du dispositif intra-utérin au cuivre chez les patientes nullipares : étude prospective unicentrique. Gynécologie Obstétrique & Fertilité, Elsevier Masson, 2015, 43 (2), pp.144--150. ⟨10.1016/j.gyobfe.2015.01.003⟩. ⟨hal-01147373⟩

Benjamin Boyer, Johann Ezelin, Pierre Poulain, Adrien Saladin, Martin Zacharias, et al.. An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA. PLoS ONE, Public Library of Science, 2015, 10 (3), pp.e0116414. ⟨10.1371/journal.pone.0116414⟩. ⟨hal-01230983⟩

Pierrick Craveur, Agnel Praveen Joseph, Pierre Poulain, Joseph Rebehmed, Alexandre de Brevern. Cis-trans isomerization of omega dihedrals in proteins.. Amino Acids, Springer Verlag, 2013, 45 (2), pp.279-89. ⟨10.1007/s00726-013-1511-3⟩. ⟨inserm-00926521⟩

Vincent Jallu, Pierre Poulain, Patrick F. J. Fuchs, Cécile Kaplan, Alexandre de Brevern. Modeling and molecular dynamics of HPA-1a and -1b polymorphisms: effects on the structure of the β3 subunit of the αIIbβ3 integrin.. PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e47304. ⟨10.1371/journal.pone.0047304⟩. ⟨inserm-00926600⟩

Giovanni M Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, et al.. Ten simple rules for getting help from online scientific communities.. PLoS Computational Biology, Public Library of Science, 2011, 7 (9), pp.e1002202. ⟨10.1371/journal.pcbi.1002202⟩. ⟨inserm-00664605⟩

Jerome Clasadonte, Pierre Poulain, Naresh K. Hanchate, Gabriel Corfas, Sergio R. Ojeda, et al.. Prostaglandin E2 release from astrocytes triggers gonadotropin-releasing hormone (GnRH) neuron firing via EP2 receptor activation.. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2011, 108 (38), pp.16104-9. ⟨10.1073/pnas.1107533108⟩. ⟨inserm-00626467⟩

Pierre Poulain, Jean-Christophe Gelly, Delphine Flatters. Detection and architecture of small heat shock protein monomers.. PLoS ONE, Public Library of Science, 2010, 5 (4), pp.e9990. ⟨10.1371/journal.pone.0009990⟩. ⟨inserm-00474076⟩

Adrien Saladin, Christopher Amourda, Pierre Poulain, Nicolas Férey, Marc Baaden, et al.. Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.. Nucleic Acids Research, Oxford University Press, 2010, 38 (19), pp.6313-23. ⟨10.1093/nar/gkq459⟩. ⟨hal-00533099⟩

Florent Calvo, Pierre Poulain. Transitions between secondary structures in isolated polyalanines. The European Physical Journal D : Atomic, molecular, optical and plasma physics, EDP Sciences, 2009, 51 (1), pp.15-23. ⟨10.1140/epjd/e2008-00096-0⟩. ⟨inserm-00320828⟩

Adrien Saladin, Sébastien Fiorucci, Pierre Poulain, Chantal Prévost, Martin Zacharias. PTools: an opensource molecular docking library.. BMC Structural Biology, BioMed Central, 2009, 9, pp.27. ⟨10.1186/1472-6807-9-27⟩. ⟨inserm-00474185⟩

J.-P. Schaal, M. Dreyfus, F. Bretelle, B. Carbonne, O. Dupuis, et al.. Length of pushing efforts: pushing is not playing. Reply to the article of C. Le Ray and F. Audibert. Journal de Gynécologie Obstétrique et Biologie de la Reproduction, Elsevier Masson, 2008, 37 (7), pp.715-723. ⟨10.1016/j.jgyn.2008.08.001⟩. ⟨hal-00493417⟩

Pierre Poulain, Adrien Saladin, Brigitte Hartmann, Chantal Prévost. Insights on protein-DNA recognition by coarse grain modelling.. Journal of Computational Chemistry, Wiley, 2008, 29 (15), pp.2582-92. ⟨10.1002/jcc.21014⟩. ⟨inserm-00320808⟩

Rodolphe Antoine, Michel Broyer, Julia Chamot-Rooke, Claude Dedonder, Charles Desfrançois, et al.. Comparison of the fragmentation pattern induced by collisions, laser excitation and electron capture. Influence of the initial excitation.. Rapid Communications in Mass Spectrometry, Wiley, 2006, 20 (11), pp.1648-52. ⟨10.1002/rcm.2489⟩. ⟨inserm-00264369⟩

P. Poulain, R. Antoine, M. Broyer, P. Dugourd. Monte Carlo simulations of flexible molecules in a static electric field: electric dipole and conformation. Chemical Physics Letters, Elsevier, 2005, 401, pp.1--6. ⟨10.1016/j.cplett.2004.11.025⟩. ⟨hal-00018545⟩

Marie-Caroline Michalski, Valérie Briard-Bion, F. Michel, F Tasson, P. Poulain. Size distribution of fat globules in human colostrum, breast milk, and infant formula. Journal of Dairy Science, American Dairy Science Association, 2005, 88, pp.1927-1940. ⟨hal-01453966⟩

Odile Viltart, Olivia Mullier, François Bernet, Pierre Poulain, Saadia Ba-M'Hamed, et al.. Motor cortical control of cardiovascular bulbar neurones projecting to spinal autonomic areas.. Journal of Neuroscience Research, Wiley, 2003, 73 (1), pp.122-35. ⟨10.1002/jnr.10598⟩. ⟨hal-00332926⟩

H. Sequeira, O. Viltart, S. Ba-M'Hamed, P. Poulain. Cortical control of somato-cardiovascular integration: neuroanatomical studies.. Brain Research Bulletin, Elsevier, 2000, 53 (1), pp.87-93. ⟨hal-00332937⟩

Jérémy Tuloup, Claire Vandiedonck, Sandrine Caburet, Pierre Poulain. Plasma : plateforme d'e-learning pour l'analyse interactive de données. Journées Réseaux de l'Enseignement et de la Recherche (JRES), May 2022, Marseille, France. ⟨hal-03563658v2⟩

F. Desbrousses, S. Rouquette, J.M. Chapplain, P. Poulain. 7 – Mastite du post-partum à streptocoque ß-hémolytique du groupe A : à propos d’un cas. 33° Journées de la Société Française de Sénologie et de Pathologie Mammaire (SFSPM), Marseille, 2011. Cancer du sein : surdiagnostic, surtraitement. A la recherche d'un nouvel équilibre, Nov 2011, Marseille, France. pp.248. ⟨hal-03575862⟩

V. Mansuy, Sarah Geller, J.P. Rey, P. Poulain, M. Giacomini, et al.. Impact of hypothalamic astrocytes on GnV-3 GnRH secreting cells: functional and transcriptomic analysis. 92. Annual Meeting & Expo of the Endocrine Society (ENDO 2010), Jun 2010, San Diego, United States. ⟨hal-02757522⟩

Sarah Geller, V. Mansuy, P. Poulain, J.P. Rey, M. Giacomini, et al.. Hypothalamic astrocytes induce the neuronal maturation and function of GnRH-expressing GnV cells. 7. International Congress of Neuroendocrinology - A Satellite Symposium "Plasticity of Neuroendocrine Systems", Jul 2010, Tours, France. ⟨hal-02754605⟩

Sarah Geller, P. Poulain, Nicolas Peineau, Anne Duittoz, V. Prevot. Rôle des astrocytes dans la maturation neuronale de la lignée hypothalamique adulte GnV sécrétant la GnRH. 36. Colloque de la Société de Neuroendocrinologie, Sep 2009, Nice, France. ⟨hal-02753378⟩

Hélène Chiapello, Thomas Denecker, Gildas Le Corguillé, Pierre Poulain, Denis Puthier, et al.. The IFB e-Learning Working Group. JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France. ⟨hal-03296617⟩

Patrick F J Fuchs, Pierre Poulain. Programmation en Python pour les sciences de la vie. Dunod, 2019, 9782100796021. ⟨hal-03337954⟩

Pierre Poulain. La classe inversée. Exemple 2 : Retour d'expérience sur une classe inversée en bio-informatique. Jean-François Parmentier, Quentin Vicens. Enseigner et former - 2e édition Psychologie appliquée et pédagogies actives, secondaire, supérieur, formation professionnelle, Dunod, 2022. ⟨hal-03737367⟩

Thibault Poinsignon, Pierre Poulain, Mélina Gallopin, Gaëlle Lelandais. Working with omics data, an interdisciplinary challenge at the crossroads of biology and computer science. Machine Learning for Brain Disorders, In press. ⟨hal-03738102⟩

Pierre Poulain, Jean-Michel Camadro. AutoClassWeb: a simple web interface for Bayesian clustering. 2022. ⟨hal-03580909v2⟩

Pierre Poulain. Structure et dynamique de protéines isolées : approches statistiques. Biophysique [physics.bio-ph]. Université Claude Bernard - Lyon I, 2006. Français. ⟨tel-00094458v2⟩

Pierre Poulain. Recyclage des données de la recherche en biologie : vers une bioinformatique écologique ?. Bio-informatique [q-bio.QM]. Université Paris Cité, 2022. ⟨tel-03737350⟩

Patrick F. J. Fuchs, Pierre Poulain. Introduction à la programmation Python pour la biologie. Master. Programmation Python, Paris, France. 2021, pp.289. ⟨hal-03264103v2⟩

Tamara Servi, Pierre Poulain. Modélisation mathématique en biologie (MOMAB). Licence. Modélisation mathématique en biologie (MOMAB), Paris, France. 2020, pp.193. ⟨hal-03263031⟩

Hubert Santuz, Amélie Bâcle, Pierre Poulain, Patrick Fuchs. buildH. 2019, ⟨swh:1:dir:4c63d5ca3497726a1e54ac152ce1667d7c004d2b;origin=https://github.com/patrickfuchs/buildH/;visit=swh:1:snp:a63a8d07dbebeb442a06707be476817cec44ac72;anchor=swh:1:rev:9f05672515e1cdb0064eeb34f63844296193bc0d⟩. ⟨hal-03467422⟩