c-GAMMA: Comparative Genome Analysis of Molecular Markers
Pierre Peterlongo
,
Jacques Nicolas
,
Dominique Lavenier
,
Raoul Vorc'H
,
Joël Querellou
Communication dans un congrès
inria-00425373v1
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GATB: Genome Assembly & Analysis Tool Box
Erwan Drezen
,
Guillaume Rizk
,
Rayan Chikhi
,
Charles Deltel
,
Claire Lemaitre
,
et al.
Article dans une revue
hal-01088571v1
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Pattern matching under DTW distance
Garance Gourdel
,
Anne Driemel
,
Pierre Peterlongo
,
Tatiana Starikovskaya
SPIRE 2022 - 29th International Symposium on String Processing and Information Retrieval , Nov 2022, Concepción, Chile. pp.315--330
Communication dans un congrès
hal-03763091v1
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fimpera: drastic improvement of Approximate Membership Query data-structures with counts
Lucas Robidou
,
Pierre Peterlongo
Article dans une revue
hal-03912993v1
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Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
Antoine Limasset
,
Jean-François Flot
,
Pierre Peterlongo
RECOMB 2018 , Apr 2018, Paris, France
Communication dans un congrès
hal-01644163v1
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Discovering Millions of Plankton Genomic Markers from the Atlantic Ocean and the Mediterranean Sea
Majda Arif
,
Jérémy Gauthier
,
Kevin Sugier
,
Daniele Iudicone
,
Olivier Jaillon
,
et al.
Article dans une revue
hal-01987200v1
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A de novo approach to disentangle partner identity and function in holobiont systems
Arnaud Meng
,
Camille Marchet
,
Erwan Corre
,
Pierre Peterlongo
,
Adriana A. Alberti
,
et al.
Article dans une revue
hal-01643153v2
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Daniel Richter
,
Romain Watteaux
,
Thomas Vannier
,
Jade Leconte
,
Paul Frémont
,
et al.
Article dans une revue
hal-02399723v2
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BlastGraph: intensive approximate pattern matching in string graphs and de-Bruijn graphs
Guillaume Holley
,
Pierre Peterlongo
PSC 2012 , Aug 2012, Prague, Czech Republic
Communication dans un congrès
hal-00711911v1
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kmdiff, large-scale and user-friendly differential k-mer analyses
Téo Lemane
,
Rayan Chikhi
,
Pierre Peterlongo
Article dans une revue
hal-03885124v1
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Genotyping Structural Variations using Long Read data
Lolita Lecompte
,
Pierre Peterlongo
,
Dominique Lavenier
,
Claire Lemaitre
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2019, Nantes, France. pp.1-8
Communication dans un congrès
hal-02288091v1
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SVJedi : Structural variation genotyping using long reads
Lolita Lecompte
,
Pierre Peterlongo
,
Dominique Lavenier
,
Claire Lemaitre
HiTSeq 2019 - Conference on High Throughput Sequencing , Jul 2019, Basel, Switzerland
Poster de conférence
hal-02290884v1
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From genomics to metagenomics: benchmark of variation graphs
Kévin da Silva
,
Nicolas Pons
,
Magali Berland
,
Florian Plaza Oñate
,
Mathieu Almeida
,
et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2019, Nantes, France
Poster de conférence
hal-02284559v1
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Lossless filter for multiple repeats with bounded edit distance
Pierre Peterlongo
,
Gustavo Akio Tominaga Sacomoto
,
Alair Pereira Do Lago
,
Nadia Pisanti
,
Marie-France Sagot
Article dans une revue
hal-00784457v1
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Mapsembler, targeted assembly of larges genomes on a desktop computer
Pierre Peterlongo
,
Rayan Chikhi
[Research Report] RR-7565, INRIA. 2011, pp.17
Rapport
inria-00577218v1
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In-place update of suffix array while recoding words
Matthias Gallé
,
Pierre Peterlongo
,
François Coste
Article dans une revue
inria-00471599v1
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metaVaR: introducing metavariant species models for reference-free metagenomic-based population genomics
Romuald Laso-Jadart
,
Christophe Ambroise
,
Pierre Peterlongo
,
Mohammed-Amin Madoui
Article dans une revue
hal-02464983v1
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Lire les lectures : analyse de données de séquençage
Pierre Peterlongo
Bio-informatique [q-bio.QM]. Université rennes1, 2016
HDR
tel-01278275v1
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COMMET: comparing and combining multiple metagenomic datasets
Nicolas Maillet
,
Guillaume Collet
,
Thomas Vannier
,
Dominique Lavenier
,
Pierre Peterlongo
IEEE BIBM 2014 , Nov 2014, Belfast, United Kingdom
Communication dans un congrès
hal-01080050v1
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Compareads: comparing huge metagenomic experiments
Nicolas Maillet
,
Claire Lemaitre
,
Rayan Chikhi
,
Dominique Lavenier
,
Pierre Peterlongo
RECOMB Comparative Genomics 2012 , Oct 2012, Niterói, Brazil
Communication dans un congrès
hal-00720951v1
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kmtricks: Efficient construction of Bloom filters for large sequencing data collections
Téo Lemane
,
Paul Medvedev
,
Rayan Chikhi
,
Pierre Peterlongo
Article dans une revue
hal-03166007v1
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kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets
Téo Lemane
,
Nolan Lezzoche
,
Julien Lecubin
,
Eric Pelletier
,
Magali Lescot
,
et al.
2023
Pré-publication, Document de travail
cea-04321497v1
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Genome specific expression in the liver of mule and hinny duck hybrids
Christian Diot
,
Frédéric Herault
,
Julien Navarro
,
Laure Le Calvez
,
Elisabeth Baéza
,
et al.
10. European Symposium on Poultry Genetics (ESPG) , Jun 2017, Saint-Malo, France. pp.1, 2017, Proceedings of the 10th European symposium on poultry genetics
Poster de conférence
hal-01594559v1
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DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics
Jérémy Gauthier
,
Charlotte Mouden
,
Tomasz Suchan
,
Nadir Alvarez
,
Nils Arrigo
,
et al.
Article dans une revue
hal-01634232v4
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Lossless filter for multiple repetitions with Hamming distance
Pierre Peterlongo
,
Nadia Pisanti
,
Frédéric Boyer
,
Alair Pereira Do Lago
,
Marie-France Sagot
Article dans une revue
inria-00179731v1
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Indexing gapped-factors using a tree
Pierre Peterlongo
,
Julien Allali
,
Marie-France Sagot
Article dans une revue
inria-00179719v1
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Identifying SNPs without a reference genome by comparing raw reads
Pierre Peterlongo
,
Nicolas Schnel
,
Nadia Pisanti
,
Marie-France Sagot
,
Vincent Lacroix
Communication dans un congrès
inria-00514887v1
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Finding all maximal perfect haplotype blocks in linear time
Jarno N Alanko
,
Hideo Bannai
,
Bastien Cazaux
,
Pierre Peterlongo
,
Jens Stoye
Article dans une revue
hal-02187246v1
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Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
Antoine Limasset
,
Jean-François Flot
,
Pierre Peterlongo
Article dans une revue
hal-02407243v1
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findere: fast and precise approximate membership query
Lucas Robidou
,
Pierre Peterlongo
SPIRE 2021 - The 28th annual Symposium on String Processing and Information Retrieval , Oct 2021, Lille / Virtual, France.
⟨10.1101/2021.05.31.446182⟩
Communication dans un congrès
hal-03243791v2
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