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Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism

Daniel R. Reuss , Josef Altenbuchner , Ulrike Mäder , Hermann Rath , Till Ischebeck , et al.
Genome Research, 2017, 27 (2), pp.289-299. ⟨10.1101/gr.215293.116⟩
Article dans une revue hal-02626760v1

Female Maternal Investment in Response to Attractive Male Songs under Urban Noise Conditions in Domestic Canaries Serinus Canaria

Guillaume Huet Des Aunay , Marco Grenna , Hans Slabbekoorn , Pierre Nicolas , Laurent Nagle , et al.
VIIth European Conference on Behavioural Biology, Session: Environmental influences on avian vocal behaviour, Jul 2014, Prague, Czech Republic. 2014
Poster de conférence hal-01479367v1

Urban Noise Undermines Female Sexual Preferences for Low-Frequency Songs in Domestic Canaries

Guillaume Huet Des Aunay , Hans Slabbekoorn , Laurent Nagle , Floriane Passas , Pierre Nicolas , et al.
Animal Behaviour, 2014, 87, pp.67-75. ⟨10.1016/j.anbehav.2013.10.010⟩
Article dans une revue hal-01478459v1

Transcriptomic analysis of the adaptation of Listeria monocytogenes at low temperature in presence of exogenous unsaturated fatty acids

Aurore Quilleré , Angelos Papadochristopoulos , Pierre Nicolas , Maud Darsonval , Florence Dubois-Brissonnet
Foodmicro 2022, Aug 2022, Athens, France
Communication dans un congrès hal-03774023v1
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Complete Genome Sequence of Flavobacteriumpsychrophilum Strain OSU THCO2-90, Used for Functional Genetic Analysis.

Tatiana Rochat , Paul Barbier , Pierre Nicolas , Valentin Loux , David Perez Pascual , et al.
Genome Announcements, 2017, 5 (23), 2 p. ⟨10.1128/genomeA.01665-16⟩
Article dans une revue hal-01607798v1
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Online exploration of transcription profiles along B. subtilis and S. aureus

Sandra Derozier , Pierre Nicolas , Ulrike Mäder , Cyprien Guerin
JOBIM 2020, Jun 2020, Virtuel, France
Poster de conférence hal-02904188v1

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis

Vladimir Bidnenko , Pierre Nicolas , Aleksandra Grylak-Mielnicka , Olivier Delumeau , Sandrine Auger , et al.
PLoS Genetics, 2017, 13 (7), pp.e1006909. ⟨10.1371/journal.pgen.1006909⟩
Article dans une revue hal-03343062v1

Spatio-temporal transcriptome profiling unveils multi-scale heterogeneity levels between subpopulations of Bacillus subtilis surface-associated communities.

Yasmine Dergham , Dominique Le Coq , Pierre Nicolas , Kassem Hamze , Romain Briandet
21st International Conference on Bacilli and Gram-Positive Bacteria, Jun 2022, Prague, Czech Republic
Communication dans un congrès hal-04312501v1
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Transcriptome architecture and regulation at environmental transitions in flavobacteria: the case of an important fish pathogen

Cyprien Guérin , Bo-Hyung Lee , Benjamin Fradet , Erwin van Dijk , Bogdan Mirauta , et al.
ISME Communications, 2021, 1 (1), ⟨10.1038/s43705-021-00029-9⟩
Article dans une revue hal-03356343v1

Inference in a metapopulation model of paratuberculosis in cattle via a composite-likelihood approximation

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu
Modelling in Animal Health conference (ModAH), Jun 2017, Nantes, France. 69 p
Communication dans un congrès hal-01608112v1
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Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase

Vladimir Bidnenko , Pierre Nicolas , Cyprien Guérin , Sandra Dérozier , Arnaud Chastanet , et al.
PLoS Genetics, 2023, 19 (2), pp.e1010618. ⟨10.1371/journal.pgen.1010618⟩
Article dans une revue hal-03974108v1
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Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase

Vladimir Bidnenko , Pierre Nicolas , Cyprien Guérin , Sandra Dérozier , Arnaud Chastanet , et al.
2022
Pré-publication, Document de travail hal-03931118v1
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Mismatch repair in Bacillus subtilis compensates for the correction bias of PolC exonuclease

Ira Tanneur , Etienne Dervyn , Matthieu Jules , Pierre Nicolas
Society for Molecular Biology and Evolution ( SMBE ) 2023, Jul 2023, Ferrara, Italy. 2023
Poster de conférence hal-04163622v1

Phenotypic and Genetic Characterization of Flavobacterium psychrophilum Recovered from Diseased Salmonids in China

Shaowu Li , Jingru Chai , Christopher Knupp , Pierre Nicolas , Di Wang , et al.
Microbiology Spectrum, 2021, 9 (2), ⟨10.1128/Spectrum.00330-21⟩
Article dans une revue hal-03356345v1
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Greedy reduction of Bacillus subtilis genome yields emergent phenotypes

Etienne Dervyn , Anne-Gaëlle Planson , Kosei Tanaka , Victor Chubukov , Cyprien Guérin , et al.
BACELL2023, Nov 2023, Kobe, Japan.
Poster de conférence hal-04316425v1

Structure, Synthesis, and Molecular Cloning of Dermaseptins B, a Family of Skin Peptide Antibiotics

Stéphane Charpentier , Mohamed Amiche , Jan Mester , Véronique Vouille , Jean-Pierre Le Caer , et al.
Journal of Biological Chemistry, 1998, 273 (24), pp.14690-14697. ⟨10.1074/jbc.273.24.14690⟩
Article dans une revue hal-02160836v1

Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions

Ulrike Mäder , Pierre Nicolas , Maren Depke , Jan Pané-Farré , Michel Debarbouille , et al.
PLoS Genetics, 2016, 12 (4), pp.e1005962. ⟨10.1371/journal.pgen.1005962⟩
Article dans une revue hal-03273507v1

Nation-wide and local diversity of the fish pathogen Flavobacterium psychrophilum in Japan revealed by MLST analysis

Erina Fujiwara-Nagata , Pierre Nicolas , Céline Chantry-Darmon , Jean-François Bernardet , Mitsuru Eguchi , et al.
Flavobacterium 2012, University of Turku. Abo Akademie, Turku, FIN., 2012, Turku, Finland
Communication dans un congrès hal-02805452v1

Dealing with stochasticity: credibility intervals for a point-estimate using a composite likelihood approximation

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu
IDDconf 2019, Sep 2019, Ambleside, United Kingdom. , 2019
Poster de conférence hal-02786726v1

Statistical modeling of bacterial promoter sequences for regulatory motif discovery using expression data

Islam Sultan , Sophie Schbath , Pierre Nicolas
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès hal-02734855v1
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The mutational landscape of Bacillus subtilis conditional hypermutators suggests how proofreading inherently skews polymerase error rates

Ira Tanneur , Etienne Dervyn , Cyprien Guérin , Guillaume Kon Kam King , Matthieu Jules , et al.
2023
Pré-publication, Document de travail hal-04366758v1
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Statistical modelling of bacterial promoter sequences for regulatory motif discovery with the help of transcriptome data: application to Listeria monocytogenes

Ibrahim Sultan , Vincent Fromion , Sophie Schbath , Pierre Nicolas
Journal of the Royal Society Interface, 2020, 17 (171), pp.20200600. ⟨10.1098/rsif.2020.0600⟩
Article dans une revue hal-03270230v1

Approche combinées RNAseq/imagerie pour la caractérisation transcriptionnelle de sous populations au sein de biofilms de B. subtilis

Yasmine Dergham , Dominique Le Coq , Pierre Nicolas , Eugénie Huillet , Pilar Sanchez , et al.
Journées Nutritions Ecosystèmes Microbiens (NEM), Apr 2022, Jouy-en-Josas, France
Communication dans un congrès hal-03652600v1

Bacillus subtilis and the beanstalk

Romain Briandet , Yasmine Dergham , Arnaud Bridier , Pilar Sanchez-Vizuete , Julien Deschamps , et al.
Asia-Pacific Biofilms, Oct 2022, Guandzou, China
Communication dans un congrès hal-04337980v1

Les techniques MLST et PFGE pour l’étude de Flavobacterium psychrophilum sur isolats cliniques et non cliniques

Ségolène Calvez , Charlène Nguedia-Siekoula , Pierre Nicolas , Éric Duchaud
4. Journées de la Recherche Filières Piscicoles, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2014, Paris, France
Communication dans un congrès hal-02744351v1
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Direct comparison of spatial transcriptional heterogeneity across diverse Bacillus subtilis biofilm communities

Yasmine Dergham , Dominique Le Coq , Pierre Nicolas , Elena Bidnenko , Sandra Dérozier , et al.
Nature Communications, 2023, 14 (1), pp.7546. ⟨10.1038/s41467-023-43386-w⟩
Article dans une revue hal-04296907v1

Non‐Linear Optical Activity of Chiral Bipyrimidine‐Based Thin Films

Prescillia Nicolas , Stephania Abdallah , Ahmet Dok , Yovan de Coene , Olivier Jeannin , et al.
Chemistry - An Asian Journal, 2024, Chemistry-An Asian Journal, pp.e202400112. ⟨10.1002/asia.202400112⟩
Article dans une revue hal-04479211v1
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C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair.

Stephen Mcgovern , Sonia Baconnais , Pierre Roblin , Pierre Nicolas , Pascal Drevet , et al.
Nucleic Acids Research, 2016, 44 (10), pp.4785-4806. ⟨10.1093/nar/gkw149⟩
Article dans une revue hal-01457533v1

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models

Bogdan Mirauta , Pierre Nicolas , Hugues Richard
Bioinformatics, 2014, 30 (10), pp.1409-1416. ⟨10.1093/bioinformatics/btu042⟩
Article dans une revue hal-01528412v1
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New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains

Devon Kavanaugh , Benjamin Glasset , Rozenn Dervyn , Cyprien Guérin , Sandra Plancade , et al.
Clinical Microbiology and Infection, 2022, 28 (1), pp.137.e1-137.e8. ⟨10.1016/j.cmi.2021.05.035⟩
Article dans une revue hal-03356344v1