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Tracking heterogeneous particle motions in dense intra-cellular environments

 Philippe Roudot , Liya Ding , Khuloud Jaqaman , Charles Kervrann , Danuser Gaudenz
SIAM Conference on Imaging Science, SIAM, May 2016, Albuquerque, United States
Communication dans un congrès hal-01575767v1

Semi-parametric robust Gaussian fitting

 Philippe Roudot , Charles Kervrann , François Waharte
IEEE ISBI 2012 Workshop: Particle Tracking Challenge, May 2012, Barcelona, Spain
Communication dans un congrès hal-00763820v1
Image document

A sparse-to-dense method for 3D optical flow estimation in 3D light microscopy image sequences

 Sandeep Manandhar , Patrick Bouthemy , Erik Welf , Philippe Roudot , Charles Kervrann
ISBI 2018 - IEEE 15th International Symposium on Biomedical Imaging, Apr 2018, Washington DC, United States. pp.952-956, ⟨10.1109/ISBI.2018.8363728⟩
Communication dans un congrès hal-01960109v1

3D Optical Flow Estimation Combining 3D Census Signature and Total Variation Regularization

 Sandeep Manandhar , Patrick Bouthemy , Eric Welf , Philippe Roudot , Charles Kervrann
ISBI 2020 - IEEE 17th International Symposium on Biomedical Imaging, Apr 2020, Iowa City, United States. pp.965-968, ⟨10.1109/ISBI45749.2020.9098690⟩
Communication dans un congrès hal-03085956v1

3D motion estimation in 3D light microscopy image sequences: application to cell migration

 Sandeep Manandhar , Patrick Bouthemy , Philippe Roudot , Charles Kervrann
QBI 2019 - Quantitative BioImaging Conference, Jan 2019, Rennes, France
Communication dans un congrès hal-02424694v1
Image document

Lifetime estimation of moving vesicles in frequency-domain fluorescence lifetime imaging microscopy

 Philippe Roudot , Charles Kervrann , François Waharte
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, May 2012, Barcelona, Spain. pp.668-671, ⟨10.1109/ISBI.2012.6235636⟩
Communication dans un congrès hal-00763790v1
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Piecewise-stationary motion modeling and iterative smoothing to track heterogeneous particle motions in dense environments

 Philippe Roudot , Liya Ding , Khuloud Jaqaman , Charles Kervrann , Gaudenz Danuser
IEEE Transactions on Image Processing, 2017, 26 (11), pp.5395 - 5410. ⟨10.1109/TIP.2017.2707803⟩
Article dans une revue hal-01575754v1

u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions

 Philippe Roudot , Wesley Legant , Qiongjing Zou , Kevin Dean , Tadamoto Isogai , et al.
Cell Reports Methods, 2023, 3 (12), pp.100655. ⟨10.1016/j.crmeth.2023.100655⟩
Article dans une revue hal-04434297v1
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Approximate Bayesian Computation, stochastic algorithms and non-local means for complex noise models

 Charles Kervrann , Philippe Roudot , François Waharte
IEEE International Conference on Image Processing, Oct 2014, Paris, France. pp.4
Communication dans un congrès hal-01103322v1
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3D Flow Field Estimation and Assessment for Live Cell Fluorescence Microscopy

 Sandeep Manandhar , Patrick Bouthemy , Erik Welf , Gaudenz Danuser , Philippe Roudot , et al.
Bioinformatics, 2020, 36 (5), pp.1317-1325. ⟨10.1093/bioinformatics/btz780⟩
Article dans une revue hal-02308001v1
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A detector-independent quality score for cell segmentation without ground truth in 3D live fluorescence microscopy

 Jules Vanaret , Victoria Dupuis , Pierre-François Lenne , Frédéric Jp Richard , Sham Tlili , et al.
2023
Pré-publication, Document de travail hal-03923509v2
Image document

Lifetime estimation on moving sub-cellular objects in frequency domain FLIM imaging

 Philippe Roudot , Charles Kervrann , Cedric Blouin , Francois Waharte
Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2015, 32 (10), pp.15. ⟨10.1364/JOSAA.32.001821⟩
Article dans une revue hal-01246392v1
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Image Processing Methods for Dynamical Intracellular Processes Analysis in QuantitativeFluorescence Microscopy

 Philippe Roudot
Image Processing [eess.IV]. Universite Rennes 1, 2014. English. ⟨NNT : ⟩
Thèse tel-01103887v1
Image document

Lifetime MAP reconstruction in frequency-domain fluorescence lifetime imaging microscopy

 Philippe Roudot , Charles Kervrann , François Waharte , Jérôme Boulanger
IEEE International Conference on Image Processing, ICIP 2012, Oct 2012, Orlando, FL, United States
Communication dans un congrès hal-00763803v1

Noise modeling for intensified camera in fluorescence imaging: application to image denoising

 Philippe Roudot , Charles Kervrann , Jérôme Boulanger , François Waharte
ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.600-603, ⟨10.1109/ISBI.2013.6556546⟩
Communication dans un congrès hal-00931360v1
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Objective comparison of particle tracking methods

 Nicolas Chenouard , Ihor Smal , Fabrice de Chaumont , Martin Maska , Ivo F. Sbalzarini , et al.
Nature Methods, 2014, 11 (3), pp.281-289. ⟨10.1038/nmeth.2808⟩
Article dans une revue hal-00932869v1
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