Philippe Deschamps

Documents

Publications

	Metagenome-derived virus-microbe ratios across ecosystems Purificación López-García , Ana Gutiérrez-Preciado , Mart Krupovic , Maria Ciobanu , Philippe Deschamps The International Society of Microbiologial Ecology Journal, inPress, ⟨10.1038/s41396-023-01431-y⟩ Article dans une revue hal-04108767v1
	BE3 is the major branching enzyme isoform required for amylopectin synthesis in Chlamydomonas reinhardtii Adeline Courseaux , Océane George , Philippe Deschamps , Coralie Bompard , Thierry Duchêne Frontiers in Plant Science, 2023, 14, pp.1201386. ⟨10.3389/fpls.2023.1201386⟩ Article dans une revue hal-04112980v1
	Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns Gwendoline David , Purificación López‐garcía , David Moreira , Benjamin Alric , Philippe Deschamps Molecular Ecology, 2021, 30 (9), pp.2162-2177. ⟨10.1111/mec.15864⟩ Article dans une revue hal-03327969v1
	Archaeal overdominance close to life-limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia Jodie Belilla , Miguel Iniesto , David Moreira , Karim Benzerara , José María López‐garcía Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15771⟩ Article dans une revue hal-03384106v1
	Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient Miguel Iniesto , David Moreira , Guillaume Reboul , Philippe Deschamps , Karim Benzerara Environmental Microbiology, 2021, 23, pp.51-68. ⟨10.1111/1462-2920.15252⟩ Article dans une revue hal-02988545v1
	Large-scale geography survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa A. Cornille , E. Jousselin , P. Deschamps , L. Jardillier , M. Miñarro Peer Community Journal, 2021, 1, pp.e34. ⟨10.24072/pcjournal.26⟩ Article dans une revue hal-03605093v1
	Functional shifts in microbial mats recapitulate early Earth metabolic transitions Ana Gutiérrez-Preciado , Aurélien Saghaï , David Moreira , Yvan Zivanovic , Philippe Deschamps Nature Ecology & Evolution, 2018, 2 (11), pp.1700-1708. ⟨10.1038/s41559-018-0683-3⟩ Article dans une revue hal-02996248v1
	Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry Rafael I Ponce-Toledo , David Moreira , Purificacion Lopez-Garcia , Philippe Deschamps Molecular Biology and Evolution, 2018, 35 (9), pp.2198-2204. ⟨10.1093/molbev/msy121⟩ Article dans une revue hal-02108901v1
	An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids Rafael I Ponce-Toledo , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Karim Benzerara Current Biology - CB, 2017, 27 (3), pp.386-391. ⟨10.1016/j.cub.2016.11.056⟩ Article dans une revue hal-01741643v1
	Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond Aurélien Saghaï , Ana Gutiérrez-Preciado , Philippe Deschamps , David Moreira , Paola Bertolino Environmental Microbiology, 2017, 19 (6), pp.2405-2421. ⟨10.1111/1462-2920.13754⟩ Article dans une revue hal-03872172v1
	The Chlamydomonas mex1 mutant shows impaired starch mobilization without maltose accumulation Justin Findinier , Hande Tunçay , Miriam Schulz-Raffelt , Philippe Deschamps , Corentin Spriet Journal of Experimental Botany, 2017, 68 (18), pp.5177-5189. ⟨10.1093/jxb/erx343⟩ Article dans une revue cea-02023216v1
	Resilience of Freshwater Communities of Small Microbial Eukaryotes Undergoing Severe Drought Events Marianne Simon , Purificación López-García , Philippe Deschamps , Gwendal Restoux , Paola Bertolino Frontiers in Microbiology, 2016, 7, pp.812. ⟨10.3389/fmicb.2016.00812⟩ Article dans une revue hal-01587905v1
	Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites Aurélien Saghaï , Yvan Zivanovic , Nina Zeyen , David Moreira , Karim Benzerara Frontiers in Microbiology, 2015, 6, pp.797. ⟨10.3389/fmicb.2015.00797⟩ Article dans une revue hal-01221204v1
	Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life C. Petitjean , P. Deschamps , P. Lopez-Garcia , D. Moreira , Céline Brochier-Armanet Molecular Biology and Evolution, 2015, 32, pp.1242-54 Article dans une revue hal-02025628v1
	Bacterial gene import and mesophilic adaptation in archaea Purificación López-García , Yvan Zivanovic , Philippe Deschamps , David Moreira Nature Reviews Microbiology, 2015, 13 (7), pp.447 - 456. ⟨10.1038/nrmicro3485⟩ Article dans une revue hal-01438307v1
	Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria Kamil M. Szafranski , Philippe Deschamps , Marina R. Cunha , Sylvie Marylène Gaudron , Sébastien Duperron Frontiers in Microbiology, 2015, 6, pp.162. ⟨10.3389/fmicb.2015.00162⟩ Article dans une revue hal-01221485v1
	Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems Marianne Simon , Ludwig Jardillier , Philippe Deschamps , David Moreira , Gwendal Restoux Environmental Microbiology, 2015, 17 (10), pp.3610-3627. ⟨10.1111/1462-2920.12591⟩ Article dans une revue hal-03022575v1
	Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study Charles Bachy , John R. Dolan , Purificación López-García , Philippe Deschamps , David Moreira The International Society of Microbiologial Ecology Journal, 2013, 7 (2), pp.244-255. ⟨10.1038/ismej.2012.106⟩ Article dans une revue hal-03502641v1
	Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Jonas Collén , Betina Porcel , Wilfrid Carré , Steven G Ball , Cristian Chaparro Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩ Article dans une revue hal-01073830v1
	Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea. Céline Brochier-Armanet , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Francisco Rodríguez-Valera The International Society of Microbiologial Ecology Journal, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩ Article dans une revue hal-00662567v1
	Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. Christophe Colleoni , Marc Linka , Philippe Deschamps , Michael G Handford , Paul Dupree Molecular Biology and Evolution, 2010, epub ahead of print. ⟨10.1093/molbev/msq158⟩ Article dans une revue hal-00495914v1
	Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii. David Dauvillée , Philippe Deschamps , Jean-Philippe Ral , Charlotte Plancke , Jean-Luc Putaux Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (50), pp.21126-21130. ⟨10.1073/pnas.0907424106⟩ Article dans une revue hal-00436589v1
	The heterotrophic dinoflagellate Crypthecodinium cohnii defines a model genetic system to investigate cytoplasmic starch synthesis. Philippe Deschamps , Delphine Guillebeault , Jimi Devassine , David Dauvillée , Sophie Haebel Eukaryotic Cell, 2008, 7 (5), pp.872-80. ⟨10.1128/EC.00461-07⟩ Article dans une revue hal-00267765v1
	Early Gene Duplication within Chloroplastida and its correspondence with Relocation of Starch Metabolism to Chloroplasts. Philippe Deschamps , Hervé Moreau , Alexandra Z Worden , David Dauvillée , Steven Ball Genetics, 2008, 178, pp.2373-2387. ⟨10.1534/genetics.108.087205⟩ Article dans une revue hal-00247313v1
	The relocation of starch metabolism to chloroplasts: when, why and how. Philippe Deschamps , Ilka Haferkamp , Christophe d'Hulst , H Ekkehard Neuhaus , Steven G Ball Trends in Plant Science, 2008, epub ahead of print. ⟨10.1016/j.tplants.2008.08.009⟩ Article dans une revue hal-00326081v1
	THE PATHWAY OF CYTOSOLIC STARCH SYNTHESIS IN THE MODEL GLAUCOPHYTE CYANOPHORA PARADOXA. Charlotte Plancke , Christophe Colleoni , Philippe Deschamps , David Dauvillée , Yasunori Nakamura Eukaryotic Cell, 2007, 7 (2), epub ahead of print. ⟨10.1128/EC.00373-07⟩ Article dans une revue hal-00198810v1
	Metabolic Symbiosis and the Birth of the Plant Kingdom. Philippe Deschamps , Christophe Colleoni , Yasunori Nakamura , Eiji Suzuki , Jean-Luc Putaux Molecular Biology and Evolution, 2007, 25 (3), epub ahead of print. ⟨10.1093/molbev/msm280⟩ Article dans une revue hal-00250123v1
	Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii Jean-Philippe Ral , Christophe Colleoni , Fabrice Wattebled , David Dauvillee , Clement Nempont Plant Physiology, 2006, 142, pp.305-317 Article dans une revue hal-00092079v1
	Molecular and Biochemical Analysis of Periplastidial Starch Metabolism in the Cryptophyte Guillardia theta Ilka Haferkamp , Philippe Deschamps , Michelle Ast , Wolfgang Jeblick , Uwe Maier Eukaryotic cell., 2006, 5, pp.964-971 Article dans une revue hal-00085428v1
	Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii David Dauvillee , Vincent Chochois , Martin Steup , Sophie Haebel , Nora Eckermann Plant Journal, 2006, 48, pp.274-285 Article dans une revue hal-00092272v1
	Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta. Philippe Deschamps , Ilka Haferkamp , David Dauvillée , Sophie Haebel , Martin Steup Eukaryotic Cell, 2006, 5 (6), pp.954-63. ⟨10.1128/EC.00380-05⟩ Article dans une revue hal-00198811v1

	The Comparative, Biochemistry, Genetics and Evolution of Starch Metabolism in Chlamydomonas reinhardtii Philippe Deschamps , Steven Ball , David Dauvillee Goodenough, Ursula; Grossman, Arthur; Wollman, Francis-André. The Chlamydomonas Sourcebook: Volume 2 Organellar and Metabolic Processes 3rd edition, Elsevier, 2022, 9780128224571. ⟨10.1016/C2019-0-02810-5⟩ Chapitre d'ouvrage hal-03798391v1
	Genome Sequence Databases: Types of Data and Bioinformatic Tools Ana Gutiérrez-Preciado , Philippe Deschamps , Tom Delmont , Claudia Chica , Nathan A.M. Chrismas Reference Module in Biomedical Sciences, Elsevier, 2019, ⟨10.1016/b978-0-12-801238-3.99223-7⟩ Chapitre d'ouvrage hal-02378810v1

Philippe Deschamps

Publications

Metagenome-derived virus-microbe ratios across ecosystems

BE3 is the major branching enzyme isoform required for amylopectin synthesis in Chlamydomonas reinhardtii

Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns

Archaeal overdominance close to life-limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia

Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient

Large-scale geography survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa

Functional shifts in microbial mats recapitulate early Earth metabolic transitions

Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry

An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids

Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond

The Chlamydomonas mex1 mutant shows impaired starch mobilization without maltose accumulation

Resilience of Freshwater Communities of Small Microbial Eukaryotes Undergoing Severe Drought Events

Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites

Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life

Bacterial gene import and mesophilic adaptation in archaea

Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria

Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis.

Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii.

The heterotrophic dinoflagellate Crypthecodinium cohnii defines a model genetic system to investigate cytoplasmic starch synthesis.

Early Gene Duplication within Chloroplastida and its correspondence with Relocation of Starch Metabolism to Chloroplasts.

The relocation of starch metabolism to chloroplasts: when, why and how.

THE PATHWAY OF CYTOSOLIC STARCH SYNTHESIS IN THE MODEL GLAUCOPHYTE CYANOPHORA PARADOXA.

Metabolic Symbiosis and the Birth of the Plant Kingdom.

Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii

Molecular and Biochemical Analysis of Periplastidial Starch Metabolism in the Cryptophyte Guillardia theta

Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii

Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta.

The Comparative, Biochemistry, Genetics and Evolution of Starch Metabolism in Chlamydomonas reinhardtii

Genome Sequence Databases: Types of Data and Bioinformatic Tools