Philippe ANDREY

Documents

Publications

	Non-random spatial organization of telomere varies during the cell cycle and requires LAP2 and BAF Debora Keller , Sonia Stinus , David Umlauf , Edith Gourbeyre , Eric Biot iScience, 2024, pp.109343. ⟨10.1016/j.isci.2024.109343⟩ Article dans une revue hal-04484063v1
	Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis Mohamed Oughou , Eric Biot , Nicolas Arnaud , Aude Maugarny-Calès , Patrick Laufs Quantitative Plant Biology, 2023, 4, pp.e1. ⟨10.1017/qpb.2022.23⟩ Article dans une revue hal-03780169v1
	TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images Elise Laruelle , Jean-Christophe Palauqui , Philippe Andrey , Alain Trubuil Plant Methods, 2023, 19, pp.128. ⟨10.1186/s13007-023-01106-x⟩ Article dans une revue hal-04398556v1
	Dopamine Modulates the Processing of Food Odour in the Ventral Striatum Olivier Rampin , Audrey Saint Albin Deliot , Christian Ouali , Jasmine Burguet , Elisa Gry Biomedicines, 2022, 10 (5), pp.1126. ⟨10.3390/biomedicines10051126⟩ Article dans une revue hal-03738444v1
	Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis Elise Laruelle , Katia Belcram , Alain Trubuil , Jean-Christophe Palauqui , Philippe Andrey eLife, 2022, 11, pp.e79224. ⟨10.7554/eLife.79224⟩ Article dans une revue hal-04301574v1
	Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin Javier Arpòn , Kaori Sakai , Valérie Gaudin , Philippe Andrey Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-020-79158-5⟩ Article dans une revue hal-03332371v1
	Edge correction for intensity estimation of 3D heterogeneous point processes from replicated data J. Burguet , P. Andrey Spatial Statistics, 2020, 36, pp.100421. ⟨10.1016/j.spasta.2020.100421⟩ Article dans une revue hal-03160300v1
	Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos Julien Moukhtar , Alain Trubuil , Katia Belcram , David D. Legland , Zhor Khadir PLoS Computational Biology, 2019, 15 (2), pp.e1006771. ⟨10.1371/journal.pcbi.1006771⟩ Article dans une revue hal-02393309v1
	On the presence and functional significance of sympathetic premotor neurons with collateralized spinal axons in the rat David G. S. Farmer , Natasha Pracejus , Bowen Dempsey , Anita Turner , Phillip Bokiniec The Journal of Physiology, 2019, 597 (13), pp.3407-3423. ⟨10.1113/JP277661⟩ Article dans une revue hal-02625857v1
	Heterogeneity and its multiscale integration in plant morphogenesis Léo Serra , Nicolas Arnaud , Faïçal Selka , Catherine Rechenmann , Philippe Andrey Current Opinion in Plant Biology, 2018, 46, pp.18-24. ⟨10.1016/j.pbi.2018.07.001⟩ Article dans une revue hal-02621377v1
	FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination Joiselle Blanche Fernandes , Marine Duhamel , Mathilde Seguéla-Arnaud , Nicole Froger , Chloé Girard PLoS Genetics, 2018, 14 (4), pp.e1007317. ⟨10.1371/journal.pgen.1007317⟩ Article dans une revue hal-02178025v1
	FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination Joiselle Blanche Fernandes , Marine Duhamel , Mathilde Seguéla-Arnaud , Nicole Froger , Chloé Girard PLoS Genetics, 2018, 14 (4), pp.e1007317. ⟨10.1371/journal.pgen.1007317⟩ Article dans une revue hal-04432010v1
	FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination Joiselle Blanche Fernandes , Marine Duhamel , Mathilde Seguéla-Arnaud , Nicole Froger , Chloé Girard PLoS Genetics, 2018, 14, ⟨10.1371/journal.pgen.1007317⟩ Article dans une revue hal-04455147v1
	A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain Ignacio Arganda-Carreras , Tudor Manoliu , Nicolas Mazuras , Florian Schulze , Juan Iglesias Frontiers in Neuroinformatics, 2018, 12, pp.13. ⟨10.3389/fninf.2018.00013⟩ Article dans une revue hal-01828331v1
	Human spinal ejaculation generator Clément Chéhensse , Patricia Facchinetti , Stéphane Bahrami , Philippe Andrey , Jean-Marc Soler Annals of Neurology, 2017, 81 (1), pp.35-45. ⟨10.1002/ana.24819⟩ Article dans une revue hal-01602656v1
	Immunohistochemical characterization of a spinal cord generator of ejaculation in human C. Chehensse , P. Facchinetti , S. Bahrami , Philippe Andrey , J. M. Soler Journal of Sexual Medicine, 2017, 14 (1), pp.18-18. ⟨10.1016/j.jsxm.2016.11.041⟩ Article dans une revue hal-02625067v1
	Strategy and software for the statistical spatial analysis of 3D intracellular distributions Eric Biot , Elizabeth Crowell Lecouey , Jasmine Burguet-de Curières , Herman Höfte , Samantha Vernhettes Plant Journal, 2016, 87 (2), pp.1-13. ⟨10.1111/tpj.13189⟩ Article dans une revue hal-01533894v1
	MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ David Legland , Ignacio Arganda Carreras , Philippe Andrey Bioinformatics, 2016, 32 (22), pp.3532-3534. ⟨10.1093/bioinformatics/btw413⟩ Article dans une revue hal-01438611v1
	NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei Axel Poulet , Ignacio Arganda-Carreras , David Legland , Aline V. Probst , Philippe Andrey Bioinformatics, 2015, 31 (7), pp.1144 - 1146. ⟨10.1093/bioinformatics/btu774⟩ Article dans une revue hal-01920000v1
	Statistical comparison of spatial point patterns in biological imaging Jasmine Burguet-de Curières , Philippe Andrey PLoS ONE, 2014, 9 (2), 12 p. ⟨10.1371/journal.pone.0087759⟩ Article dans une revue hal-01204001v1
	A generic classification-based method for segmentation of nuclei in 3D images of early embryos Jaza Gul-Mohammed , Ignacio Arganda Carreras , Philippe Andrey , Vincent Galy , Thomas Boudier BMC Bioinformatics, 2014, 15, pp.9. ⟨10.1186/1471-2105-15-9⟩ Article dans une revue hal-01204103v1
	Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana Stefania del Prete , Javier Arpon Diaz-Aldagalan , Kaori Sakai , Philippe Andrey , Valerie Gaudin Cytogenetic and Genome Research, 2014, 143 (1-3), pp.28-50. ⟨10.1159/000363724⟩ Article dans une revue hal-01204098v1
	Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange , Sonia Baconnais , Maryannick Harper , Nicola Minshall , Sylvie Souquere RNA, 2012, pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-01540245v1
	Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange , Sonia Baconnais , Maryannick Harper , Nicola Minshall , Sylvie Souquere RNA, 2012, 18 (9), pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-03065208v1
	Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange , Sonia Baconnais , Maryannick Harper , Nicola Minshall , Sylvie Souquere RNA, 2012, 18 (9), pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-02994882v1
	Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei Philippe Andrey , Kien Kiêu , Clémence Kress , Gaetan Lehmann , Leïla Tirichine PLoS Computational Biology, 2010, 6 (7), pp.e10000853 1-15. ⟨10.1371/journal.pcbi.1000853⟩ Article dans une revue hal-01203864v1
	Three-dimensional macronutrient-associated Fos expression patterns in the mouse brainstem Jessica Schwartz , Jasmine Burguet-de Curières , Olivier Rampin , Gilles Fromentin , Philippe Andrey PLoS ONE, 2010, 5 (2), ⟨10.1371/journal.pone.0008974⟩ Article dans une revue hal-01173379v1
	Three-dimensional statistical modeling of neuronal populations: Illustration with spatial localization of supernumerary neurons in the locus coeruleus of quaking mutant mice Jasmine Burguet , Philippe Andrey , Olivier Rampin , Yves Y. Maurin Journal of Comparative Neurology, 2009, 513 (5), pp.483-495. ⟨10.1002/cne.21954⟩ Article dans une revue hal-02659576v1
	3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei Leila Tirichine , Philippe Andrey , Eric Biot , Yves Y. Maurin , Valérie Gaudin Plant Methods, 2009, 5, 7 p. ⟨10.1186/1746-4811-5-11⟩ Article dans une revue hal-02664319v1
	Modeling the 3D functional architecture of the nucleus in animal and plant kingdoms Valérie Gaudin , Philippe Andrey , Eve Devinoy , Clémence Kress , Kiên K. Kiêu Comptes Rendus Biologies, 2009, 332 (11), pp.937-946. ⟨10.1016/j.crvi.2009.09.001⟩ Article dans une revue hal-02610642v1
	Joint registration and averaging of multiple 3D anatomical surface models Emeric Maschino , Yves Y. Maurin , Philippe Andrey Computer Vision and Image Understanding, 2006, 101, pp.16-30 Article dans une revue hal-02665683v1
	Free-D: an integrated environment for three-dimensional reconstruction from serial sections Philippe Andrey , Yves Maurin Journal of Neuroscience Methods, 2005, 145, pp.233-244 Article dans une revue hal-02681457v1
	Using image analysis for automated crystal positioning in a synchrotron X-ray beam for high-throughput macromolecular crystallography Philippe Andrey , B. Lavault , F. Cipriani , Yves Maurin Journal of Applied Crystallography, 2004, 37, pp.265-269 Article dans une revue hal-02674962v1
	Spatial segregation within the sacral parasympathetic nucleus of neurons innervating the bladder or the penis of the rat as revealed by three-dimensional reconstruction Bernadette B. Banrezes , Philippe Andrey , Emeric Maschino , A. Schirar , J. Peytevin Neuroscience, 2002, 115 (1), pp.97-109 Article dans une revue hal-02675828v1

	Beyond singularity in spatial analyses of plant cells and tissues Philippe Andrey 7th International Plant Computational Biology Workshop, Sep 2023, Cambridge, United Kingdom Communication dans un congrès hal-04457883v1
	Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis Mohamed Said Oughou , Eric Biot , Nicolas Arnaud , Aude Maugarny-Calès , Patrick Laufs First European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, INRAE; INRIA, Nov 2023, Poitiers, France Communication dans un congrès hal-04552791v1
	Computational analysis of cell division patterns in the shoot apical meristem Sandrine Lefranc , Chie Kodera , Eric Biot , Ayoub Ouddah , Alexandre Durrmeyer First European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, Nov 2022, Poitiers, France Communication dans un congrès hal-04552636v1
	Computational approaches to decipher cell division patterns in plant embryo Philippe Andrey 6th International Plant Computational Biology Workshop, Aug 2022, Lyon, France Communication dans un congrès hal-03776246v1
	Statistical modeling of spatial interactions in biological patterns, with application to plant nuclear organization Philippe Andrey Quantitative BioImaging Conference, Jan 2020, Oxford, United Kingdom Communication dans un congrès hal-03779479v1
	Deciphering cell division patterns in plant early embryogenesis by combining 3D image analysis and computer modelling Elise Laruelle , Julien Moukhtar , Alain Trubuil , Katia Belcram , David D. Legland Plant Growth and Form: International Symposium on Quantitative Plant Morphodynamics, Sep 2019, Heidelberg, Germany Communication dans un congrès hal-02786917v1
	Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis Julien Moukhtar El Demerdache , Elise Laruelle , Alain Trubuil , Katia Belcram , David D. Legland Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-02791564v1
	Dynamic atlasing of gene expression domains from individual images Mohamed Oughou , Eric Cunha , Eric Biot , Nicolas Arnaud , Patrick Laufs 16. IEEE International Symposium on Biomedical Imaging 2019 (ISBI1́9), Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759188⟩ Communication dans un congrès hal-02733986v1
	Mapping and comparing spatial distributions in biological imaging Jasmine Burguet , Philippe Andrey Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-03780303v1
	Surface parameterization and registration for statistical multiscale atlasing of organ development Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2019, Long Beach, Californie, United States. ⟨10.1109/CVPRW.2019.00022⟩ Communication dans un congrès hal-02733984v1
	Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis Faïçal Selka , Thomas T. Blein , Jasmine Burguet-de Curières , Eric Biot , Patrick Laufs Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-02786234v1
	Accurate dating of organs during growth can unmask invariant developmental patterns: illustration with plant leaf morphogenesis Mohamed Oughou , Eric Biot , Nicolas Arnaud , Aude Maugarny-Calès , Philippe Andrey 7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France Communication dans un congrès hal-02734090v1
	Statistical modeling of spatial interactions: new insights into the spatial organization of plant heterochromatin Philippe Andrey INDEPTH Cost Action Meeting: Impact of Chromatin Domains on Plant Phenotypes, Dec 2019, El Escorial, Spain Communication dans un congrès hal-03776229v1
	Statistical multi-scale atlasing of leaf morphogenesis Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs 7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France Communication dans un congrès hal-02733992v1
	Image analysis and computer modelling of cell divisions in plant early embryogenesis Philippe Andrey Phycomorph EU Cost Action Workshop: “Imaging seaweed cells and tissues”, Nov 2018, Roscoff, France Communication dans un congrès hal-02785870v1
	Modeling 3D cell division patterns in plant early embryogenesis Philippe Andrey CLIPS 2017 - Multiscale live imaging in human, animal and plant health, Sep 2017, Gif-sur-Yvette, France Communication dans un congrès hal-02785869v1
	Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis Faïçal Selka , Thomas T. Blein , Jasmine Burguet , Eric Biot , Patrick Laufs 16. IEEE International Conference on Computer Vision (ICCV 2017), Oct 2017, Venise, Italy. 3212 p., ⟨10.1109/ICCVW.2017.14⟩ Communication dans un congrès hal-02737139v1
	Spatial reorganization of Proopiomelanocortin (POMC)-expressing Neurons in the Arcuate Nucleus of POMC-EGFP Mice Resistant or Prone to Obesity Daniel D. Tomé , Marion Soto , Catherine C. Chaumontet , Mathilde Guillaumin , Simon Benoit Experimental Biology Meeting, Apr 2016, San Diego, Californie, United States. pp.2 Communication dans un congrès hal-02740851v1
	Spatial 3D modelling of nuclear architecture: application to A. thaliana leaf cell nuclei Javier Arpon Diaz-Aldagalan , Kaori Sakai , Stefania del Prete , Valérie Gaudin , Philippe Andrey Quantitative BioImaging Conference, Jan 2015, Paris, France Communication dans un congrès hal-02795803v1
	Computational modelling of cell division patterns during plant early embryogenesis Julien Moukhtar , Katia Belcram , Alain Trubuil , David D. Legland , Jean-Christophe Palauqui International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium Communication dans un congrès hal-02795769v1
	A spatial statistical approach to analyze and model nuclear architecture Javier Arpon Diaz-Aldagalan , Kaori Sakai , Stefania del Prete , Valérie Gaudin , Philippe Andrey International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium Communication dans un congrès hal-02795768v1
	Modeling spatial distributions and patterns in biological imaging Philippe Andrey Mini-symposium BioImage Informatics, GDR2588. FRA., Nov 2015, Paris, France Communication dans un congrès hal-02795146v1
	P186: Différences d’organisation spatiale des neurones pro-opiomélanocortine (POMC) dans le noyau arqué de l’hypothalamus de souris sensibles ou résistantes à l’obésité M. Soto , M. Guillaumin , J. Burguet , S. Benoit , Catherine C. Chaumontet 12es Journées Francophones de Nutrition, Dec 2014, Bruxelles, Belgium. pp.S165, ⟨10.1016/S0985-0562(14)70828-3⟩ Communication dans un congrès hal-01579240v1
	De l’image numérique à la donnée scientifique: Qu’est-ce qu’une image numérique? Marie Weiss , Marie Francoise M. F. Devaux , P. Andrey , David D. Legland Ecole Image INRA: De l'image numérique à la donnée scientifique : quelles démarches d'analyse et de traitement d'images ?, 2014, Lyon, France Communication dans un congrès hal-01336199v1
	Statistical groupwise comparison of spatial point patterns in biological imaging Jasmine Burguet-de Curières , Philippe Mailly , Philippe Andrey 10. International Symposium on Biomedical Imaging - From Nano to Macro, Institute of Electrical and Electronics Engineers (IEEE). USA., Apr 2013, San Francisco, United States. 1519 p., ⟨10.1109/ISBI.2013.6556510⟩ Communication dans un congrès hal-01204006v1
	Traitement central d'odeurs chez le rat vigile révélé par IRM améliorée par l'agent de contraste manganèse (MEMRI) Benoist Lehallier , O. Rampin , Gérard Coureaud , P. Andrey , A. Saint-Albin 1er congrès de la SFRMBM (Société Française de Résonance Magnétique en Biologie & Médecine), Mar 2012, Marseille, France Communication dans un congrès hal-00782677v1
	Reconstructing the three-dimensional surface of a branching and merging biological structure from a stack of coplanar contours Jasmine Burguet de Curières , Philippe Mailly , Yves Y. Maurin , Philippe Andrey 8. IEEE International Symposium on Biomedical Imaging (ISBI 2011), Mar 2011, Chicago, United States. ⟨10.1109/ISBI.2011.5872479⟩ Communication dans un congrès hal-02750403v1
	La modification du rapport NADH/NAD+ cytosolique durant la fécondation modifie la croissance des animaux et le poids de l'adulte chez la souris Bernadette B. Banrezes , Eugénie Canon , Thierry Sainte-Beuve , Philippe Andrey , J. Cancela 3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France Communication dans un congrès hal-02752198v1
	Architecture nucléaire : modélisation spatiale et application à la compréhension des mécanismes de différenciation Philippe Andrey , Valérie Gaudin , Eve Devinoy , Kiên Kiêu , Marie Pascale M. P. Debey Colloque interne des IFR144, 115 et 87, Apr 2009, Gif-sur-Yvette, France. n.p Communication dans un congrès hal-02818125v1
	Modélisation de la dynamique temporelle des signaux calciques dans l'embryon précoce de souris Philippe Andrey , Daria Andreoli , Bernadette B. Banrezes , Eugénie Canon , Thierry Sainte-Beuve 3. Journées d'Animation Scientifique du Département de Physiologie Animale et Système d'Elevage, Oct 2009, Tours, France Communication dans un congrès hal-02757997v1
	Three-dimensional statistical modeling of neuronal populations : illustration with spatial localization of supernumerary neurons in the locus coeruleus of quaking mutant mice. Jasmine Burguet de Curières , Philippe Andrey , Olivier Rampin , Yves Y. Maurin 9. Colloque de la Société des Neurosciences, May 2009, Bordeaux, France. ⟨10.1002/cne.21954⟩ Communication dans un congrès hal-02755219v1
	Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuli Jessica Schwarz , Nicolas Darcel , Olivier Rampin , Philippe Andrey , Jasmine Burguet-de Curières Experimental Biology 2008, Apr 2008, San Diego, United States Communication dans un congrès hal-01173368v1
	Dynamiques calciques de la fécondation: couplage entre approche expérimentale et de modélisation pour identifier l'origine des effets à long terme Bernadette B. Banrezes , Philippe Andrey , Eugénie Canon , Thierry Sainte-Beuve , José-Manuel Cancela 2. Journées de Restitution des Projets financés sur Crédits Incitatifs en 2006 et 2007, Nov 2008, Tours, France Communication dans un congrès hal-04519875v1
	Dynamiques calciques de la fécondation: couplage entre approche expérimentale et de modélisation pour identifier l'origine des effets à long terme Bernadette B. Banrezes , Philippe Andrey , Eugénie Canon , Thierry Sainte-Beuve , José-Manuel Cancela 2. Journées de Restitution des Projets financés sur Crédits Incitatifs en 2006 et 2007, Nov 2008, Tours, France Communication dans un congrès hal-02758364v1
	A new filter for spot extraction in N-dimensional biological imaging Eric Biot , Elizabeth Crowell , Hermanus H. Höfte , Yves Y. Maurin , Samantha S. Vernhettes 5. IEEE International Symposium on Biomedical imaging - from Nano to Macro, May 2008, Paris, France Communication dans un congrès hal-02758229v1
	Spatial normalisation of three-dimensional neuroanatomical models using shape registration, averaging, and warping Philippe Andrey , Emeric Maschino , Yves Y. Maurin 5. IEEE International Symposium on Biomedical imaging - from Nano to Macro, May 2008, Paris, France Communication dans un congrès hal-02756733v1
	Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuli Jessica Schwarz , Nicolas Darcel , Olivier Rampin , Philippe Andrey , Jasmine Burguet-de Curières 16. Annual meeting of the Society for the Study of Ingestive Behavior, Jul 2008, Paris, France Communication dans un congrès hal-01173371v1
	Cartographie statistique de populations de neurones Jasmine Burguet , Philippe Andrey , Olivier Rampin , Yves Y. Maurin Aromagri 2007, Oct 2007, Jouy-en-Josas, France. 1 p Communication dans un congrès hal-02816478v1
	Algorithm and software for the reconstruction, integration, and statistical analysis of 3D models in neuroanatomy Philippe Andrey , Emeric Maschino , Jasmine Burguet , Olivier Rampin , Yves Y. Maurin 8e Colloque de la Société des Neurosciences, May 2007, Montpellier, France Communication dans un congrès hal-02753925v1
	Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRI J.-M. Bonny , Gilles Gs Sicard , Y. Maurin , C. Keller , Benoist Schaal Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM) and of the European Society for Magnetic Resonance in Medicine and Biology (ESMRMB), May 2007, Berlin, Germany Communication dans un congrès hal-00160890v1
	Statistical three-dimensional estimation and mapping of neuronal distributions Jasmine Burguet , Yves Y. Maurin , Olivier Rampin , Philippe Andrey 8e Colloque de la Société des Neurosciences, May 2007, Montpellier, France Communication dans un congrès hal-02753768v1

	BIP, a new software design for batch analysis of biological images Eric Biot , Sandrine Lefranc , Ayoub Ouddah , Philippe Andrey First European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, Nov 2022, Poitiers, France. Poster de conférence hal-04552618v1
	Spatial normalisation of three-dimensional neuroanatomical models using shape registration Philippe Andrey , Emeric Maschino , Yves Y. Maurin 5. IEEE International Symposium on Biomedical Imaging (ISBI'08) : From Nano to Macro, May 2008, Paris, France. n.p., 2008 Poster de conférence hal-02814911v1
	Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRI J.-M. Bonny , Gilles Sicard , Yves Y. Maurin , Cecile Keller , Benoist Schaal Joint Annual Meeting ISMRM-ESMRM, May 2007, Berlin, Germany. 1 p., 2007 Poster de conférence hal-02814005v1

	A method for testing Random spatial models on nuclear object distributions Javier Arpon , Valérie Gaudin , Philippe Andrey Plant chromatin dynamics : Methods and protocols, 1675, Springer Protocol, Humana Press, 2018, Methods in Molecular Biology, 978-1-4939-7317-0. ⟨10.1007/978-1-4939-7318-7_29⟩ Chapitre d'ouvrage hal-02786989v1
	A method for testing random spatial model on nuclear object distributions Javier Arpon Diaz-Aldagalan , Valérie Gaudin , Philippe Andrey Methods in molecular biology: Plant chromatin dynamics, Springer International Publishing, 2017 Chapitre d'ouvrage hal-01603142v1
	Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach Ignacio Arganda Carreras , Philippe Andrey Light Microscopy, 1563, SPRINGER, pp.23, 2017, Methods in Molecular Biology, 978-1-4939-6810-7; 978-1-4939-6808-4. ⟨10.1007/978-1-4939-6810-7_13⟩ Chapitre d'ouvrage hal-02788784v1

	Spatial modeling of telomere intra-nuclear distribution reveals non-random organization that varies during cell cycle and depends on LAP2 and BAF Debora Keller , Sonia Stinus , David Umlauf , Edith Gourbeyre , Eric Biot 2024 Pré-publication, Document de travail hal-04457815v1
	Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis Elise Laruelle , Katia Belcram , Alain Trubuil , Jean-Christophe Palauqui , Philippe Andrey 2022 Pré-publication, Document de travail hal-03766429v1

	Analyse et modélisation d’organisations spatiales en imagerie biologique Philippe Andrey Sciences du Vivant [q-bio]. Université Pierre et Marie Curie - Paris 6, 2015 HDR tel-02795150v1

Philippe ANDREY

Publications

Non-random spatial organization of telomere varies during the cell cycle and requires LAP2 and BAF

Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis

TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images

Dopamine Modulates the Processing of Food Odour in the Ventral Striatum

Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis

Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin

Edge correction for intensity estimation of 3D heterogeneous point processes from replicated data

Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos

On the presence and functional significance of sympathetic premotor neurons with collateralized spinal axons in the rat

Heterogeneity and its multiscale integration in plant morphogenesis

FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination

FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination

FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination

A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain

Human spinal ejaculation generator

Immunohistochemical characterization of a spinal cord generator of ejaculation in human

Strategy and software for the statistical spatial analysis of 3D intracellular distributions

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei

Statistical comparison of spatial point patterns in biological imaging

A generic classification-based method for segmentation of nuclei in 3D images of early embryos

Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana

Multiple binding of repressed mRNAs by the P-body protein Rck/p54

Multiple binding of repressed mRNAs by the P-body protein Rck/p54

Multiple binding of repressed mRNAs by the P-body protein Rck/p54

Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei

Three-dimensional macronutrient-associated Fos expression patterns in the mouse brainstem

Three-dimensional statistical modeling of neuronal populations: Illustration with spatial localization of supernumerary neurons in the locus coeruleus of quaking mutant mice

3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei

Modeling the 3D functional architecture of the nucleus in animal and plant kingdoms

Joint registration and averaging of multiple 3D anatomical surface models

Free-D: an integrated environment for three-dimensional reconstruction from serial sections

Using image analysis for automated crystal positioning in a synchrotron X-ray beam for high-throughput macromolecular crystallography

Spatial segregation within the sacral parasympathetic nucleus of neurons innervating the bladder or the penis of the rat as revealed by three-dimensional reconstruction

Beyond singularity in spatial analyses of plant cells and tissues

Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis

Computational analysis of cell division patterns in the shoot apical meristem

Computational approaches to decipher cell division patterns in plant embryo

Statistical modeling of spatial interactions in biological patterns, with application to plant nuclear organization

Deciphering cell division patterns in plant early embryogenesis by combining 3D image analysis and computer modelling

Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis

Dynamic atlasing of gene expression domains from individual images

Mapping and comparing spatial distributions in biological imaging

Surface parameterization and registration for statistical multiscale atlasing of organ development

Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis

Accurate dating of organs during growth can unmask invariant developmental patterns: illustration with plant leaf morphogenesis

Statistical modeling of spatial interactions: new insights into the spatial organization of plant heterochromatin

Statistical multi-scale atlasing of leaf morphogenesis

Image analysis and computer modelling of cell divisions in plant early embryogenesis

Modeling 3D cell division patterns in plant early embryogenesis

Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis

Spatial reorganization of Proopiomelanocortin (POMC)-expressing Neurons in the Arcuate Nucleus of POMC-EGFP Mice Resistant or Prone to Obesity

Spatial 3D modelling of nuclear architecture: application to A. thaliana leaf cell nuclei

Computational modelling of cell division patterns during plant early embryogenesis

A spatial statistical approach to analyze and model nuclear architecture

Modeling spatial distributions and patterns in biological imaging

P186: Différences d’organisation spatiale des neurones pro-opiomélanocortine (POMC) dans le noyau arqué de l’hypothalamus de souris sensibles ou résistantes à l’obésité

De l’image numérique à la donnée scientifique: Qu’est-ce qu’une image numérique?

Statistical groupwise comparison of spatial point patterns in biological imaging

Traitement central d'odeurs chez le rat vigile révélé par IRM améliorée par l'agent de contraste manganèse (MEMRI)

Reconstructing the three-dimensional surface of a branching and merging biological structure from a stack of coplanar contours

La modification du rapport NADH/NAD+ cytosolique durant la fécondation modifie la croissance des animaux et le poids de l'adulte chez la souris

Architecture nucléaire : modélisation spatiale et application à la compréhension des mécanismes de différenciation

Modélisation de la dynamique temporelle des signaux calciques dans l'embryon précoce de souris

Three-dimensional statistical modeling of neuronal populations : illustration with spatial localization of supernumerary neurons in the locus coeruleus of quaking mutant mice.

Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuli

Dynamiques calciques de la fécondation: couplage entre approche expérimentale et de modélisation pour identifier l'origine des effets à long terme

Dynamiques calciques de la fécondation: couplage entre approche expérimentale et de modélisation pour identifier l'origine des effets à long terme

A new filter for spot extraction in N-dimensional biological imaging

Spatial normalisation of three-dimensional neuroanatomical models using shape registration, averaging, and warping

Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuli

Cartographie statistique de populations de neurones

Algorithm and software for the reconstruction, integration, and statistical analysis of 3D models in neuroanatomy

Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRI

Statistical three-dimensional estimation and mapping of neuronal distributions

BIP, a new software design for batch analysis of biological images

Spatial normalisation of three-dimensional neuroanatomical models using shape registration

Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRI