GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes
Daniel J Wilson
,
Philip Supply
,
The Cryptic Consortium
Article dans une revue
hal-03054005v1
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The Biology and Epidemiology of Mycobacterium canettii
Philip Supply
,
Roland Brosch
Sebastien Gagneux.
Strain Variation in the Mycobacterium tuberculosis Complex:Its Role in Biology, Epidemiology and Control , 1019, Springer, pp.27-41, 2017, Advances in Experimental Medicine and Biology, 978-3-319-64371-7.
⟨10.1007/978-3-319-64371-7_2⟩
Chapitre d'ouvrage
pasteur-02046359v1
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A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex
Bazezew Yenew
,
Arash Ghodousi
,
Getu Diriba
,
Ephrem Tesfaye
,
Andrea Maurizio Cabibbe
,
et al.
Article dans une revue
hal-04467426v1
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Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex.
Konstantinos Papadimitriou
,
Rania Anastasiou
,
Eleni Mavrogonatou
,
Jochen Blom
,
Nikos Papandreou
,
et al.
Article dans une revue
inserm-00978580v1
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Molecular typing approaches for epidemiological investigations of Paratuberculosis
Cv Thibault
,
Maggy Grayon
,
Ml Boschiroli
,
E Willery
,
C Allix
,
et al.
Journées d’Animation Scientifique du Département Santé Animale , 2009, Port d'Albret, France. pp.Inconnu, 2009
Poster de conférence
hal-02815015v1
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Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia.
Isdore C. Shamputa
,
Levan Jugheli
,
Nikoloz Sadradze
,
Eve Willery
,
Françoise Portaels
,
et al.
Article dans une revue
inserm-00089426v1
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Z oonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon
Salam El Achkar
,
Christine Demanche
,
Marwan Osman
,
Rayane Rafei
,
Mohamad Bachar Ismail
,
et al.
Article dans une revue
hal-02347081v1
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Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs
Agathe Jouet
,
Cyril Gaudin
,
Nelly Badalato
,
Caroline Allix-Béguec
,
Stéphanie Duthoy
,
et al.
Article dans une revue
hal-03053938v2
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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Philip Supply
,
Michael Marceau
,
Sophie Mangenot
,
David Roche
,
Carine Rouanet
,
et al.
Article dans une revue
pasteur-02615220v1
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New VNTR-MIRU markers used for typing M avium ssp paratuberculosis and M avium SSP avium strains: comparison with IS900 RFLP and IS1245 RFLP typing, session 1 : Génomique - Approches globales - Biologie intégrative
Virginie Thibault
,
Maggy Grayon
,
P Overduin
,
María Laura Boschiroli
,
C Hubbans
,
et al.
4e Rencontres des Microbiologistes de l’INRA , Jun 2006, Dourdan, France. pp.Inconnu, 2006
Poster de conférence
hal-02814405v1
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Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates.
Caroline Allix-Béguec
,
Céline Wahl
,
Madeleine Hanekom
,
Vladyslav Nikolayevskyy
,
Francis Drobniewski
,
et al.
Article dans une revue
pasteur-01011025v1
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Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria
Eva C. Boritsch
,
Varun Khanna
,
Alexandre Pawlik
,
Nadine Honoré
,
Victor Navas
,
et al.
Proceedings of the National Academy of Sciences of the United States of America , 2016, 113 (35), pp.9876-9881.
⟨10.1073/pnas.1604921113⟩
Article dans une revue
pasteur-02618520v1
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Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms
The Cryptic Consortium
,
Philip Supply
Article dans une revue
hal-03837098v1
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Analysis of Mycobacterium tuberculosis genetic lineages circulating in Riga and Riga region, Latvia, isolated between 2008 and 2012
Ilva Pole
,
Julija Trofimova
,
Inga Norvaisa
,
Philip Supply
,
Girts Skenders
,
et al.
Article dans une revue
hal-03054014v1
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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
Martin Hunt
,
Phelim Bradley
,
Simon Grandjean Lapierre
,
Simon Heys
,
Mark Thomsit
,
et al.
Article dans une revue
hal-03057175v1
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Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains.
Franck Biet
,
Iker Sevilla
,
Thierry Cochard
,
Louise Lefrançois
,
Joseba Garrido
,
et al.
Article dans une revue
inserm-00777139v1
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A re-evaluation of M. prototuberculosis": continuing the debate.
Sylvain Brisse
,
Philip Supply
,
Roland Brosch
,
Veronique Vincent
,
M Cristina Gutierrez
Article dans une revue
pasteur-00146923v1
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Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France
Maxime Barbier
,
Oana Dumitrescu
,
Catherine Pichat
,
Gérard Carret
,
Anne-Sophie Ronnaux-Baron
,
et al.
Article dans une revue
hal-01908989v1
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Origin and Global Expansion of Mycobacterium tuberculosis Complex Lineage 3
Yassir Shuaib
,
Christian Utpatel
,
Thomas Kohl
,
Ivan Barilar
,
Margo Diricks
,
et al.
Article dans une revue
hal-03837119v1
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Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis
Thierry Wirth
,
Marine Bergot
,
Jean-Philippe Rasigade
,
Bruno Pichon
,
Maxime Barbier
,
et al.
Article dans une revue
hal-03056509v1
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Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment
Claudio U. Köser
,
Alexandra Aubry
,
Laure Fournier Le Ray
,
Catherine Pierre-Audigier
,
Philip Supply
,
et al.
Article dans une revue
hal-03837138v1
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First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains.
Jessica L de Beer
,
Kristin Kremer
,
Csaba Ködmön
,
Philip Supply
,
Dick van Soolingen
,
et al.
Article dans une revue
hal-00762210v1
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Development of VNTR typing of M avium ssp paratuberculosis : comparison of results with those obtained by IS900 RFLP
Franck Biet
,
V Thibault
,
Maggy Grayon
,
Philip Supply
,
Laurence L.A. Guilloteau
8th International Colloquium on Paratuberculosis , 2005, Copenhagen, Denmark. pp.Inconnu
Communication dans un congrès
hal-02827974v1
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MAC-INMV-SSR: a web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains
Thierry Cochard
,
Maxime Branger
,
Philip Supply
,
Srinand Sreevatsan
,
Franck Biet
Article dans une revue
hal-02347088v1
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Multidrug-resistant tuberculosis outbreak in South Africa – Authors' reply
Ndivhuho Makhado
,
Maphoshane Nchabeleng
,
Philip Supply
,
Bouke C de Jong
,
Emmanuel André
Article dans une revue
hal-02346987v1
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Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres
Emily Lai-Ho Maclean
,
Paolo Miotto
,
Lice González Angulo
,
Matteo Chiacchiaretta
,
Timothy Walker
,
et al.
Article dans une revue
hal-04269204v1
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Mycobacterium avium subspecies strains from human and animal origin studied by RFLP-IS1311 and MIRUs-VNTR
N. Radomski
,
Valérie Thibault
,
C. Karoui
,
K. de Cruz
,
T. Cochard
,
et al.
30th annual congress of European Society of Mycobacteriology (ESM) , 2009, Porto, Portugal
Communication dans un congrès
hal-00755584v1
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Prevalence and drivers of false-positive rifampicin-resistant Xpert MTB/RIF results: a prospective observational study in Rwanda
Jean Claude Semuto Ngabonziza
,
Tom Decroo
,
Patrick Migambi
,
Yves Mucyo Habimana
,
Armand van Deun
,
et al.
Article dans une revue
hal-03055066v1
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Second worldwide proficiency study on variable number of tandem repeats typing of Mycobacterium tuberculosis complex.
J. L. de Beer
,
C. Ködmön
,
J. van Ingen
,
P. Supply
,
D. van Soolingen
,
et al.
Article dans une revue
pasteur-01024982v1
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A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates
Philip Fowler
,
Carla Wright
,
Helen Spiers
,
Tingting Zhu
,
Elisabeth Ml Baeten
,
et al.
Article dans une revue
hal-03837128v1
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