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New VNTR-MIRU markers used for typing M avium ssp paratuberculosis and M avium SSP avium strains: comparison with IS900 RFLP and IS1245 RFLP typing, session 1 : Génomique - Approches globales - Biologie intégrative

Virginie Thibault , Maggy Grayon , P Overduin , María Laura Boschiroli , C Hubbans , et al.
4e Rencontres des Microbiologistes de l’INRA, Jun 2006, Dourdan, France. pp.Inconnu, 2006
Poster de conférence hal-02814405v1

Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria

Eva C. Boritsch , Varun Khanna , Alexandre Pawlik , Nadine Honoré , Victor Navas , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (35), pp.9876-9881. ⟨10.1073/pnas.1604921113⟩
Article dans une revue pasteur-02618520v1
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Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates.

Caroline Allix-Béguec , Céline Wahl , Madeleine Hanekom , Vladyslav Nikolayevskyy , Francis Drobniewski , et al.
Journal of Clinical Microbiology, 2014, 52 (1), pp.164-72. ⟨10.1128/JCM.02519-13⟩
Article dans une revue pasteur-01011025v1

Molecular typing approaches for epidemiological investigations of Paratuberculosis

Cv Thibault , Maggy Grayon , Ml Boschiroli , E Willery , C Allix , et al.
Journées d’Animation Scientifique du Département Santé Animale, 2009, Port d'Albret, France. pp.Inconnu, 2009
Poster de conférence hal-02815015v1
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Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia.

Isdore C. Shamputa , Levan Jugheli , Nikoloz Sadradze , Eve Willery , Françoise Portaels , et al.
Respiratory Research, 2006, 7, pp.99. ⟨10.1186/1465-9921-7-99⟩
Article dans une revue inserm-00089426v1
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Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs

Agathe Jouet , Cyril Gaudin , Nelly Badalato , Caroline Allix-Béguec , Stéphanie Duthoy , et al.
European Respiratory Journal, 2021, 57, pp.2002338. ⟨10.1183/13993003.02338-2020⟩
Article dans une revue hal-03053938v2

Z oonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon

Salam El Achkar , Christine Demanche , Marwan Osman , Rayane Rafei , Mohamad Bachar Ismail , et al.
European Respiratory Journal, 2019, pp.1900513. ⟨10.1183/13993003.00513-2019⟩
Article dans une revue hal-02347081v1
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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

Philip Supply , Michael Marceau , Sophie Mangenot , David Roche , Carine Rouanet , et al.
Nature Genetics, 2013, 45 (2), pp.172-179. ⟨10.1038/ng.2517⟩
Article dans une revue pasteur-02615220v1
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GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes

Daniel J Wilson , Philip Supply , The Cryptic Consortium
Molecular Biology and Evolution, 2020, 37 (8), pp.2450-2460. ⟨10.1093/molbev/msaa069⟩
Article dans une revue hal-03054005v1

A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex

Bazezew Yenew , Arash Ghodousi , Getu Diriba , Ephrem Tesfaye , Andrea Maurizio Cabibbe , et al.
Nature Communications, 2023, 14 (1), pp.7519. ⟨10.1038/s41467-023-42755-9⟩
Article dans une revue hal-04467426v1

The Biology and Epidemiology of Mycobacterium canettii

Philip Supply , Roland Brosch
Sebastien Gagneux. Strain Variation in the Mycobacterium tuberculosis Complex:Its Role in Biology, Epidemiology and Control, 1019, Springer, pp.27-41, 2017, Advances in Experimental Medicine and Biology, 978-3-319-64371-7. ⟨10.1007/978-3-319-64371-7_2⟩
Chapitre d'ouvrage pasteur-02046359v1
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Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex.

Konstantinos Papadimitriou , Rania Anastasiou , Eleni Mavrogonatou , Jochen Blom , Nikos Papandreou , et al.
BMC Genomics, 2014, 15 (1), pp.272. ⟨10.1186/1471-2164-15-272⟩
Article dans une revue inserm-00978580v1

Inter- and intra-subtype genotypic differences that differentiative Mycobacterium avium subspecies paratuberculosis strains

Franck Biet , Iker A. Sevilla , Thierry Cochard , Louise Lefrançois , Joseba M. Garrido , et al.
Journées d'Animation Scientifique du Département Santé Animale, Apr 2013, Cap d'Agde, France. 2013, Santé animale et santé publique
Poster de conférence hal-02748382v1
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A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region

Jean Claude Semuto Ngabonziza , Chloé Loiseau , Michael Marceau , Agathe Jouet , Fabrizio Menardo , et al.
Nature Communications, 2020, 11 (1), pp.2917. ⟨10.1038/s41467-020-16626-6⟩
Article dans une revue hal-03053965v1
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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

Timothy Walker , Paolo Miotto , Claudio Köser , Philip Fowler , Jeff Knaggs , et al.
The Lancet Microbe, 2022, 3 (4), pp.e265-e273. ⟨10.1016/S2666-5247(21)00301-3⟩
Article dans une revue hal-03837142v1
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How Well Do Routine Molecular Diagnostics Detect Rifampin Heteroresistance in Mycobacterium tuberculosis ?

Kamela C. S. Ng , Philip Supply , Frank G. J. Cobelens , Cyril Gaudin , Julian Gonzalez-Martin , et al.
Journal of Clinical Microbiology, 2019, 57 (11), pp.e00717-19. ⟨10.1128/JCM.00717-19⟩
Article dans une revue hal-02347029v1
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Precision tuberculosis control by genome sequencing: Benefit and challenges of a new standard

Philip Supply
EBioMedicine, 2018, 36, pp.14-15. ⟨10.1016/j.ebiom.2018.08.052⟩
Article dans une revue hal-02346846v1
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Acquisition through horizontal gene transfer of plasmid pSMA198 by [i]Streptococcus macedonicus[/i] ACA-DC 198 points towards the dairy origin of the species

Konstantinos Papadimitriou , Rania Anastasiou , Eleni Maistrou , Thomas Plakas , Nikos C. Papandreou , et al.
PLoS ONE, 2015, 10 (1), ⟨10.1371/journal.pone.0116337⟩
Article dans une revue hal-01204464v1
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Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation

Florence Levillain , Yannick Poquet , Ludovic Mallet , Serge Mazeres , Michael Marceau , et al.
PLoS Pathogens, 2017, 13 (11), pp.e1006752. ⟨10.1371/journal.ppat.1006752⟩
Article dans une revue hal-01708481v1

Determination of Genotypic Diversity of Mycobacterium avium Subspecies from Human and Animal Origins by Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat and IS1311 Restriction Fragment Length Polymorphism Typing Methods

Nicolas Radomski , Vc Thibault , C Karoui , K de Cruz , Thierry Cochard , et al.
Journal of Clinical Microbiology, 2010, 48 (4), pp.1026-1034. ⟨10.1128/JCM.01869-09⟩
Article dans une revue hal-02663507v1

New variable-number tandem-repeat markers for typing Mycobacterium avium subsp paratuberculosis and M-avium strains: Comparison with IS900 and IS1245 restriction fragment length polymorphism typing

Virginie Thibault , Maggy Grayon , Maria-Laura Boschiroli , Chrisitne Hubbans , Pieter Overduin , et al.
Journal of Clinical Microbiology, 2007, 45 (8), pp.2404-2410. ⟨10.1128/JCM.00476-07⟩
Article dans une revue hal-02667726v1
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A re-evaluation of M. prototuberculosis": continuing the debate.

Sylvain Brisse , Philip Supply , Roland Brosch , Veronique Vincent , M Cristina Gutierrez
PLoS Pathogens, 2006, 2 (9), pp.e95. ⟨10.1371/journal.ppat.0020095⟩
Article dans une revue pasteur-00146923v1
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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Martin Hunt , Phelim Bradley , Simon Grandjean Lapierre , Simon Heys , Mark Thomsit , et al.
Wellcome Open Research, 2019, 4, pp.191. ⟨10.12688/wellcomeopenres.15603.1⟩
Article dans une revue hal-03057175v1
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Origin and Global Expansion of Mycobacterium tuberculosis Complex Lineage 3

Yassir Shuaib , Christian Utpatel , Thomas Kohl , Ivan Barilar , Margo Diricks , et al.
Genes, 2022, 13 (6), pp.990. ⟨10.3390/genes13060990⟩
Article dans une revue hal-03837119v1
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Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France

Maxime Barbier , Oana Dumitrescu , Catherine Pichat , Gérard Carret , Anne-Sophie Ronnaux-Baron , et al.
Scientific Reports, 2018, 8 (1), pp.5855. ⟨10.1038/s41598-018-24034-6⟩
Article dans une revue hal-01908989v1
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Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment

Claudio U. Köser , Alexandra Aubry , Laure Fournier Le Ray , Catherine Pierre-Audigier , Philip Supply , et al.
European Respiratory Journal, 2022, 59 (4), pp.2200166. ⟨10.1183/13993003.00166-2022⟩
Article dans une revue hal-03837138v1
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Analysis of Mycobacterium tuberculosis genetic lineages circulating in Riga and Riga region, Latvia, isolated between 2008 and 2012

Ilva Pole , Julija Trofimova , Inga Norvaisa , Philip Supply , Girts Skenders , et al.
Infection, Genetics and Evolution, 2020, 78, pp.104126. ⟨10.1016/j.meegid.2019.104126⟩
Article dans une revue hal-03054014v1

Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms

The Cryptic Consortium , Philip Supply
PLoS Biology, 2022, 20 (8), pp.e3001755. ⟨10.1371/journal.pbio.3001755⟩
Article dans une revue hal-03837098v1
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Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains.

Franck Biet , Iker Sevilla , Thierry Cochard , Louise Lefrançois , Joseba Garrido , et al.
BMC Microbiology, 2012, 12 (1), pp.264. ⟨10.1186/1471-2180-12-264⟩
Article dans une revue inserm-00777139v1

First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains.

Jessica L de Beer , Kristin Kremer , Csaba Ködmön , Philip Supply , Dick van Soolingen , et al.
Journal of Clinical Microbiology, 2012, 50 (3), pp.662-9. ⟨10.1128/JCM.00607-11⟩
Article dans une revue hal-00762210v1