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Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria

 Eva C. Boritsch , Varun Khanna , Alexandre Pawlik , Nadine Honoré , Victor Navas , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (35), pp.9876-9881. ⟨10.1073/pnas.1604921113⟩
Article dans une revue pasteur-02618520v1
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Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates.

 Caroline Allix-Béguec , Céline Wahl , Madeleine Hanekom , Vladyslav Nikolayevskyy , Francis Drobniewski , et al.
Journal of Clinical Microbiology, 2014, 52 (1), pp.164-72. ⟨10.1128/JCM.02519-13⟩
Article dans une revue pasteur-01011025v1

New VNTR-MIRU markers used for typing M avium ssp paratuberculosis and M avium SSP avium strains: comparison with IS900 RFLP and IS1245 RFLP typing, session 1 : Génomique - Approches globales - Biologie intégrative

 Virginie Thibault , Maggy Grayon , P Overduin , María Laura Boschiroli , C Hubbans , et al.
4e Rencontres des Microbiologistes de l’INRA, Jun 2006, Dourdan, France. pp.Inconnu, 2006
Poster de conférence hal-02814405v1
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GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes

 Daniel J Wilson , Philip Supply , The Cryptic Consortium
Molecular Biology and Evolution, 2020, 37 (8), pp.2450-2460. ⟨10.1093/molbev/msaa069⟩
Article dans une revue hal-03054005v1

A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex

 Bazezew Yenew , Arash Ghodousi , Getu Diriba , Ephrem Tesfaye , Andrea Maurizio Cabibbe , et al.
Nature Communications, 2023, 14 (1), pp.7519. ⟨10.1038/s41467-023-42755-9⟩
Article dans une revue hal-04467426v1

The Biology and Epidemiology of Mycobacterium canettii

 Philip Supply , Roland Brosch
Sebastien Gagneux. Strain Variation in the Mycobacterium tuberculosis Complex:Its Role in Biology, Epidemiology and Control, 1019, Springer, pp.27-41, 2017, Advances in Experimental Medicine and Biology, 978-3-319-64371-7. ⟨10.1007/978-3-319-64371-7_2⟩
Chapitre d'ouvrage pasteur-02046359v1
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Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex.

 Konstantinos Papadimitriou , Rania Anastasiou , Eleni Mavrogonatou , Jochen Blom , Nikos Papandreou , et al.
BMC Genomics, 2014, 15 (1), pp.272. ⟨10.1186/1471-2164-15-272⟩
Article dans une revue inserm-00978580v1

Molecular typing approaches for epidemiological investigations of Paratuberculosis

 Cv Thibault , Maggy Grayon , Ml Boschiroli , E Willery , C Allix , et al.
Journées d’Animation Scientifique du Département Santé Animale, 2009, Port d'Albret, France. pp.Inconnu, 2009
Poster de conférence hal-02815015v1
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Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia.

 Isdore C. Shamputa , Levan Jugheli , Nikoloz Sadradze , Eve Willery , Françoise Portaels , et al.
Respiratory Research, 2006, 7, pp.99. ⟨10.1186/1465-9921-7-99⟩
Article dans une revue inserm-00089426v1
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Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs

 Agathe Jouet , Cyril Gaudin , Nelly Badalato , Caroline Allix-Béguec , Stéphanie Duthoy , et al.
European Respiratory Journal, 2021, 57, pp.2002338. ⟨10.1183/13993003.02338-2020⟩
Article dans une revue hal-03053938v2
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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

 Philip Supply , Michael Marceau , Sophie Mangenot , David Roche , Carine Rouanet , et al.
Nature Genetics, 2013, 45 (2), pp.172-179. ⟨10.1038/ng.2517⟩
Article dans une revue pasteur-02615220v1

Z oonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon

 Salam El Achkar , Christine Demanche , Marwan Osman , Rayane Rafei , Mohamad Bachar Ismail , et al.
European Respiratory Journal, 2019, pp.1900513. ⟨10.1183/13993003.00513-2019⟩
Article dans une revue hal-02347081v1

Inter- and intra-subtype genotypic differences that differentiative Mycobacterium avium subspecies paratuberculosis strains

 Franck Biet , Iker A. Sevilla , Thierry Cochard , Louise Lefrançois , Joseba M. Garrido , et al.
Journées d'Animation Scientifique du Département Santé Animale, Apr 2013, Cap d'Agde, France. 2013, Santé animale et santé publique
Poster de conférence hal-02748382v1
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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

 Timothy Walker , Paolo Miotto , Claudio Köser , Philip Fowler , Jeff Knaggs , et al.
The Lancet Microbe, 2022, 3 (4), pp.e265-e273. ⟨10.1016/S2666-5247(21)00301-3⟩
Article dans une revue hal-03837142v1
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How Well Do Routine Molecular Diagnostics Detect Rifampin Heteroresistance in Mycobacterium tuberculosis ?

 Kamela C. S. Ng , Philip Supply , Frank G. J. Cobelens , Cyril Gaudin , Julian Gonzalez-Martin , et al.
Journal of Clinical Microbiology, 2019, 57 (11), pp.e00717-19. ⟨10.1128/JCM.00717-19⟩
Article dans une revue hal-02347029v1
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Precision tuberculosis control by genome sequencing: Benefit and challenges of a new standard

 Philip Supply
EBioMedicine, 2018, 36, pp.14-15. ⟨10.1016/j.ebiom.2018.08.052⟩
Article dans une revue hal-02346846v1
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Acquisition through horizontal gene transfer of plasmid pSMA198 by [i]Streptococcus macedonicus[/i] ACA-DC 198 points towards the dairy origin of the species

 Konstantinos Papadimitriou , Rania Anastasiou , Eleni Maistrou , Thomas Plakas , Nikos C. Papandreou , et al.
PLoS ONE, 2015, 10 (1), ⟨10.1371/journal.pone.0116337⟩
Article dans une revue hal-01204464v1
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Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation

 Florence Levillain , Yannick Poquet , Ludovic Mallet , Serge Mazeres , Michael Marceau , et al.
PLoS Pathogens, 2017, 13 (11), pp.e1006752. ⟨10.1371/journal.ppat.1006752⟩
Article dans une revue hal-01708481v1

Determination of Genotypic Diversity of Mycobacterium avium Subspecies from Human and Animal Origins by Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat and IS1311 Restriction Fragment Length Polymorphism Typing Methods

 Nicolas Radomski , Vc Thibault , C Karoui , K de Cruz , Thierry Cochard , et al.
Journal of Clinical Microbiology, 2010, 48 (4), pp.1026-1034. ⟨10.1128/JCM.01869-09⟩
Article dans une revue hal-02663507v1

New variable-number tandem-repeat markers for typing Mycobacterium avium subsp paratuberculosis and M-avium strains: Comparison with IS900 and IS1245 restriction fragment length polymorphism typing

 Virginie Thibault , Maggy Grayon , Maria-Laura Boschiroli , Chrisitne Hubbans , Pieter Overduin , et al.
Journal of Clinical Microbiology, 2007, 45 (8), pp.2404-2410. ⟨10.1128/JCM.00476-07⟩
Article dans une revue hal-02667726v1
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A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region

 Jean Claude Semuto Ngabonziza , Chloé Loiseau , Michael Marceau , Agathe Jouet , Fabrizio Menardo , et al.
Nature Communications, 2020, 11 (1), pp.2917. ⟨10.1038/s41467-020-16626-6⟩
Article dans une revue hal-03053965v1

Nouveaux marqueurs VNTR-MIRU utilisés pour le typage des souches de M avium subsp paratuberculosis et M avium : comparaison avec les typages RFLP-IS900 et RFLP-IS1245

 Vc Thibault , Maggy Grayon , Ml Boschiroli , C Hubbans , P Overduin , et al.
Journées d’Animation Scientifique du Département de Santé Animale, 2007, Tours, France. pp.Inconnu, 2007
Poster de conférence hal-02817961v1
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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics

 Alice Brankin , Kerri M. Malone , Ivan Barilar , Simone Battaglia , Emanuele Borroni , et al.
PLoS Biology, 2022, 20 (8), pp.e3001721. ⟨10.1371/journal.pbio.3001721⟩
Article dans une revue hal-03837104v1
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Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

 Matthias Merker , Maxime Barbier , Helen Cox , Jean-Philippe Rasigade , Silke Feuerriegel , et al.
eLife, 2018, 7, pp.e38200. ⟨10.7554/eLife.38200⟩
Article dans une revue hal-01919482v1
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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

 Conor J. Meehan , Galo A. Goig , Thomas A. Kohl , Lennert Verboven , Anzaan Dippenaar , et al.
Nature Reviews Microbiology, 2019, 17 (9), pp.533-545. ⟨10.1038/s41579-019-0214-5⟩
Article dans une revue hal-02347018v1

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

 Cryptic And The 100,000 Genomes Project Consortium , Philip Supply
New England Journal of Medicine, 2018, 379 (15), pp.1403-1415. ⟨10.1056/NEJMoa1800474⟩
Article dans une revue hal-02346911v1
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MAC-INMV-plus : a web application dedicated to genotyping of Mycobacterium avium subsp. paratuberculosis strains and other MAC members

 Thierry Cochard , Maxime Branger , Virginie Thibault , Philip Supply , Srinand Sreevatsan , et al.
13. International Colloquium on Paratuberculosis (ICP 2016), Jun 2016, Nantes, France. , 82 p., 2016
Poster de conférence hal-02740412v1
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Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis

 Matthias Merker , Jean-Philippe Rasigade , Maxime Barbier , Helen Cox , Silke Feuerriegel , et al.
Nature Communications, 2022, 13 (1), pp.5105. ⟨10.1038/s41467-022-32455-1⟩
Article dans une revue hal-03837079v1
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Accuracy of whole genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

 Roland Diel , Thomas Kohl , Florian Maurer , Matthias Merker , Karen Meywald Walter , et al.
European Respiratory Journal, 2019, pp.1901154. ⟨10.1183/13993003.01154-2019⟩
Article dans une revue hal-02347059v1

A web tool for analysis the genotyping of mycobacterium avium subsp. paratuberculosis strains and other mac members

 Thierry Cochard , Maxime Branger , Virginie Thibault , Philip Supply , Franck Biet
12. International Colloquium on Paratuberculosis, Jun 2014, Parme, Italy. 234 p., 2014
Poster de conférence hal-02743915v1
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