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    CV Perrine Paul-Gilloteaux


    I'm a CNRS Research Engineer, specialized in computer vision and bio image analysis.
    After my electrical engineering studies, with a computer vision option, I did my PhD with a company (Medtronic Surgical Navigation, Boulder USA) and the ViSages team (INRIA, INSERM, CNRS) under the supervision of Dr. Pierre Jannin.
    I was working on the tracking of deformations of the brain during craniotomy in brain surgery, in order to relocate information from different exams of the patient , in particular indicated functional areas, such as language or motor area of the brain and to display them in the surgical microscope. For this, I was creating stereoscopic reconstruction from the surgical microscope binocular, and I developed a new method for the tracking of surface deformation, based on an hybrid approach of point cloud registration and of video tracking.
    I did a first postdoc as experienced Researcher in a Marie-Curie network, ARIS*ER to work on augmented reality in surgery, and in particular the segmentation of tumors in ultrasound based on wavelet analysis of the ultrasound raw signal.
    I then got a post-doc position in Maynooth, Ireland (close to Dublin), in the Hamilton Institute which is an applied mathematics institute. I was in the Systems Biology group, where I've developed with my colleagues an intelligent fluorescent microscope, taking the decision of the area to image and of the frequency of acquisition, based on real time analysis of the image content (cell segmentation and cell tracking).
    In 2010, I joined the CNRS as research Engineer in the PICT IBISA cell and tissue microscopy facility in Institut Curie, Paris, France. My job was to support the biologists in image analysis, by adapting existing sofwtare or developping new methods.
    In June 2015, I've joined the Structure Federative de Recherche in Health of Nantes (France), where I work for the facility, and on my own research activities

    I am now leading R&D activities in multimodal image analysis, through the ANR CROCOVAL , and  heading MicroPICell, a microscopy facility performing services and R& D in histology, photonic microscopy and image analysis and management. I am one of the co-funder of COST action NEUBIAS, for which I lead the group creating biii.eu and edam bio imaging and is part of the core group managing the full network, and vice chair and the COMULIS COST action.


    Journal articles48 documents

    • Marco Castagna, Sébastien Levilly, Perrine Paul-Gilloteaux, Saïd Moussaoui, Jean-Marc Rousset, et al.. An LDV based method to quantify the error of PC-MRI derived Wall Shear Stress measurement. Scientific Reports, Nature Publishing Group, 2021, 11 (1), ⟨10.1038/s41598-021-83633-y⟩. ⟨hal-03149044⟩
    • Ilias Kounatidis, Megan Stanifer, Michael Phillips, Perrine Paul-Gilloteaux, Xavier Heiligenstein, et al.. 3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway. Cell, Elsevier, 2020, ⟨10.1016/j.cell.2020.05.051⟩. ⟨hal-02886173⟩
    • Sébastien Levilly, Marco Castagna, Jérôme Idier, Félicien Bonnefoy, David Le Touzé, et al.. Towards Quantitative Evaluation of Wall Shear Stress from 4D Flow Imaging. Magnetic Resonance Imaging, Elsevier, 2020. ⟨hal-02564861⟩
    • Beth Cimini, Simon Nørrelykke, Marion Louveaux, Nataša Sladoje, Perrine Paul-Gilloteaux, et al.. The NEUBIAS Gateway: a hub for bioimage analysis methods and materials. F1000Research, Faculty of 1000, 2020, 9, pp.613. ⟨10.12688/f1000research.24759.1⟩. ⟨hal-02903660⟩
    • Marine Malloci, Stéphanie Blandin, Philippe Hulin, Paul Dorval, Steven Nedellec, et al.. Imagerie tri-dimensionnelle d’échantillons par une technique de serial block face imaging amovible. Revue Française d'Histotechnologie, Association française d'histotechnologie, 2020, 32 (1), pp.187-197. ⟨hal-03196150⟩
    • Gloria Volohonsky, Perrine Paul-Gilloteaux, Jitka Štáfková, Julien Soichot, Jean Salamero, et al.. Kinetics of Plasmodium midgut invasion in Anopheles mosquitoes. PLoS Pathogens, Public Library of Science, 2020, 16 (9), ⟨10.1371/journal.ppat.1008739⟩. ⟨hal-03093938⟩
    • Andreas Walter, Perrine Paul-Gilloteaux, Birgit Plochberger, Ludek Sefc, Paul Verkade, et al.. Correlated Multimodal Imaging in Life Sciences: Expanding the Biomedical Horizon. Frontiers in Physics, Frontiers, 2020, 8, ⟨10.3389/fphy.2020.00047⟩. ⟨hal-02539357⟩
    • M Feyeux, A Reignier, M Mocaer, J Lammers, D Meistermann, et al.. Development of automated annotation software for human embryo morphokinetics. Human Reproduction, Oxford University Press (OUP), 2020, ⟨10.1093/humrep/deaa001⟩. ⟨hal-02509917⟩
    • Ulysse Rubens, Romain Mormont, Lassi Paavolainen, Volker Bäcker, Benjamin Pavie, et al.. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns, Cell Press Elsevier, 2020, 1, pp.100040. ⟨10.1016/j.patter.2020.100040⟩. ⟨hal-02799349⟩
    • A. David, D. Le Touzé, K. Warin-Fresse, P. Paul-Gilloteaux, F. Bonnefoy, et al.. In-vitro validation of 4D flow MRI measurements with an experimental pulsatile flow model. Diagnostic and Interventional Imaging, Elsevier, 2019, 100 (1), pp.17-23. ⟨10.1016/j.diii.2018.08.012⟩. ⟨hal-02267542⟩
    • Guillaume Potier, Romain Capoulade, Jean Mérot, Frédéric Lavancier, Xavier Heiligenstein, et al.. Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal Acquisitions.. Microscopy and Microanalysis, Cambridge University Press (CUP), 2019, 25 (S2), pp.1020-1021. ⟨10.1017/S143192761900583X⟩. ⟨hal-02267554⟩
    • Igor Ilinsky, Andreas Horn, Perrine Paul-Gilloteaux, Pierre Gressens, Catherine Verney, et al.. Human Motor Thalamus Reconstructed in 3D from Continuous Sagittal Sections with Identified Subcortical Afferent Territories. eNeuro, Society for Neuroscience, 2018, 5 (3), pp.ENEURO.0060-18.2018. ⟨10.1523/ENEURO.0060-18.2018⟩. ⟨hal-02267562⟩
    • G. Delpon, J. N'Guessan, Perrine Paul-Gilloteaux, K. Clément-Colmou, V. Potiron, et al.. EP-1998: In silico modelling of the impact of the fractionation for hypofractionated prostate treatments. Radiotherapy and Oncology, Elsevier, 2018, 127 (S2), pp.S1086-S1087. ⟨10.1016/S0167-8140(18)32307-7⟩. ⟨hal-02736053⟩
    • Xavier Heiligenstein, Perrine Paul-Gilloteaux, Graça Raposo, Jean Salamero. eC-CLEM: A multidimension, multimodel software to correlate intermodal images with a focus on light and electron microscopy.. Methods in Cell Biology, Elsevier, 2018, pp.335-352. ⟨10.1016/bs.mcb.2017.03.014⟩. ⟨hal-01712180⟩
    • Elvira Infante, Alessia Castagnino, Robin Ferrari, Pedro Monteiro, Sonia Agüera-González, et al.. LINC complex-Lis1 interplay controls MT1-MMP matrix digest-on-demand response for confined tumor cell migration. Nature Communications, Nature Publishing Group, 2018, 9 (1), ⟨10.1038/s41467-018-04865-7⟩. ⟨hal-02267545⟩
    • Perrine Paul-Gilloteaux, Xavier Heiligenstein, Martin Belle, Marie-Charlotte Domart, Banafshe Larijani, et al.. eC-CLEM: flexible multidimensional registration software for correlative microscopies. Nature Methods, Nature Publishing Group, 2017, 14 (2), pp.102 - 103. ⟨10.1038/nmeth.4170⟩. ⟨hal-01712184⟩
    • T. Vanhaecke, P. Aubert, P. Grohard, T. Durand, P. Hulin, et al.. L. fermentum CECT 5716 prevents stress-induced intestinal barrier dysfunction in newborn rats. Neurogastroenterology & Motility, Wiley, 2017, 29 (8), ⟨10.1111/nmo.13069⟩. ⟨hal-01712194⟩
    • Perrine Paul-Gilloteaux, Vincent Potiron, Grégory Delpon, Stéphane Supiot, Sophie Chiavassa, et al.. Optimizing radiotherapy protocols using computer automata to model tumour cell death as a function of oxygen diffusion processes. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.2280. ⟨10.1038/s41598-017-01757-6⟩. ⟨inserm-01550008⟩
    • Xavier Heiligenstein, Perrine Paul-Gilloteaux, Martin Belle, Graca Raposo, Jean Salamero. eC-CLEM: Flexible Multidimensional Registration Software for Correlative Microscopies with Refined Accuracy Mapping. Microscopy and Microanalysis, Cambridge University Press (CUP), 2017, 23 (S1), pp.360-361. ⟨10.1017/S1431927617002483⟩. ⟨hal-02735782⟩
    • Elodie Gazquez, Yuli Watanabe, Florence Broders-Bondon, Perrine Paul-Gilloteaux, Julie Heysch, et al.. Endothelin-3 stimulates cell adhesion and cooperates with β1-integrins during enteric nervous system ontogenesis. Scientific Reports, Nature Publishing Group, 2016, 6, pp.37877. ⟨10.1038/srep37877⟩. ⟨hal-01426076⟩
    • Florence Bondon Broders, Florence Broders-Bondon, Perrine Paul-Gilloteaux, Elodie Gazquez, Julie Heysch, et al.. Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin. Developmental Biology, Elsevier, 2016, 414 (1), pp.85-99. ⟨10.1016/j.ydbio.2016.03.022⟩. ⟨hal-03043888⟩
    • Florence Bondon Broders, Elodie Gazquez, Yuli Watanabe, Florence Broders-Bondon, Perrine Paul-Gilloteaux, et al.. Endothelin-3 stimulates cell adhesion and cooperates with β1-integrins during enteric nervous system ontogenesis. Scientific Reports, Nature Publishing Group, 2016, 6 (1), ⟨10.1038/srep37877⟩. ⟨hal-03043883⟩
    • Marco Biondini, Amel Sadou-Dubourgnoux, Perrine Paul-Gilloteaux, Giulia Zago, Melis D Arslanhan, et al.. Direct interaction between exocyst and Wave complexes promotes cell protrusions and motility.. Journal of Cell Science, Company of Biologists, 2016, 129 (20), pp.3756-3769. ⟨10.1242/jcs.187336⟩. ⟨hal-01452011⟩
    • Florence Broders-Bondon, Perrine Paul-Gilloteaux, Elodie Gazquez, Julie Heysch, Matthieu Piel, et al.. Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin. Developmental Biology, Elsevier, 2016, 414 (1), pp.85 - 99. ⟨10.1016/j.ydbio.2016.03.022⟩. ⟨hal-01712198⟩
    • Teresa Mendes Maia, Perrine Paul-Gilloteaux, Renata Basto. Quantitative analysis of flagellar proteins in Drosophila sperm tails.. Methods in Cell Biology, Elsevier, 2015, pp.263-78. ⟨10.1016/bs.mcb.2015.01.003⟩. ⟨hal-01712207⟩
    • Marie-Thérèse Prospéri, Priscilla Lépine, Florent Dingli, Perrine Paul-Gilloteaux, René Martin, et al.. Myosin 1b functions as an effector of EphB signaling to control cell repulsion. Journal of Cell Biology, Rockefeller University Press, 2015, 210 (2), pp.347 - 361. ⟨10.1083/jcb.201501018⟩. ⟨hal-01712201⟩
    • Carine Rossé, Catalina Lodillinsky, Laetitia Fuhrmann, Maya Nourieh, Pedro Monteiro, et al.. Control of MT1-MMP transport by atypical PKC during breast-cancer progression. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (18), pp.E1872 - E1879. ⟨10.1073/pnas.1400749111⟩. ⟨hal-01712228⟩
    • Maia Chanrion, Inna Kuperstein, Cédric Barrière, Fatima El Marjou, David Cohen, et al.. Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut. Nature Communications, Nature Publishing Group, 2014, 5, pp.5005. ⟨10.1038/ncomms6005⟩. ⟨hal-01712223⟩
    • Cédric Delevoye, Stephanie Miserey-Lenkei, Guillaume Montagnac, Floriane Gilles-Marsens, Perrine Paul-Gilloteaux, et al.. Recycling Endosome Tubule Morphogenesis from Sorting Endosomes Requires the Kinesin Motor KIF13A. Cell Reports, Elsevier Inc, 2014, 6 (3), pp.445-454. ⟨10.1016/j.celrep.2014.01.002⟩. ⟨hal-02735329⟩
    • Sofia Traikov, Christoph Stange, Thomas Wassmer, Perrine Paul-Gilloteaux, Jean Salamero, et al.. Septin6 and Septin7 GTP Binding Proteins Regulate AP-3- and ESCRT-Dependent Multivesicular Body Biogenesis. PLoS ONE, Public Library of Science, 2014, 9 (11), pp.e109372. ⟨10.1371/journal.pone.0109372⟩. ⟨hal-01712221⟩
    • Xavier Heiligenstein, Jérôme Heiligenstein, Cédric Delevoye, Ilse Hurbain, Sabine Bardin, et al.. The CryoCapsule: Simplifying Correlative Light to Electron Microscopy. Traffic, Wiley, 2014, 15 (6), pp.700 - 716. ⟨10.1111/tra.12164⟩. ⟨hal-01712232⟩
    • Nicolas Chenouard, Ihor Smal, Fabrice de Chaumont, Martin Maska, Ivo F. Sbalzarini, et al.. Objective comparison of particle tracking methods. Nature Methods, Nature Publishing Group, 2014, 11 (3), pp.281-289. ⟨10.1038/nmeth.2808⟩. ⟨hal-00932869⟩
    • Jérôme Boulanger, Charles Gueudry, Daniel Münch, Bertrand Cinquin, Perrine Paul-Gilloteaux, et al.. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (48), pp.17164-9. ⟨hal-01133826⟩
    • Florence Bondon Broders, Yuli Watanabe, Florence Broders-Bondon, Viviane Baral, Perrine Paul-Gilloteaux, et al.. Sox10 and Itgb1 interaction in enteric neural crest cell migration. Developmental Biology, Elsevier, 2013, 379 (1), pp.92-106. ⟨10.1016/j.ydbio.2013.04.013⟩. ⟨hal-03043892⟩
    • Pedro Monteiro, Carine Rossé, Antonio Castro-Castro, Marie Irondelle, Emilie Lagoutte, et al.. Endosomal WASH and exocyst complexes control exocytosis of MT1-MMP at invadopodia. Journal of Cell Biology, Rockefeller University Press, 2013, 203 (6), pp.1063 - 1079. ⟨10.1083/jcb.201306162⟩. ⟨hal-01712237⟩
    • Véronique Marthiens, Maria Rujano, Carole Pennetier, Sarah Tessier, Perrine Paul-Gilloteaux, et al.. Centrosome amplification causes microcephaly. Nature Cell Biology, Nature Publishing Group, 2013, 15 (7), pp.731 - 740. ⟨10.1038/ncb2746⟩. ⟨hal-01712239⟩
    • Yuli Watanabe, Florence Broders-Bondon, Viviane Baral, Perrine Paul-Gilloteaux, Veronique Pingault, et al.. Sox10 and Itgb1 interaction in enteric neural crest cell migration. Developmental Biology, Elsevier, 2013, 379 (1), pp.92 - 106. ⟨10.1016/j.ydbio.2013.04.013⟩. ⟨hal-01712242⟩
    • Antonio Castro-Castro, Carsten Janke, Guillaume Montagnac, Perrine Paul-Gilloteaux, Philippe Chavrier. ATAT1/MEC-17 acetyltransferase and HDAC6 deacetylase control a balance of acetylation of alpha-tubulin and cortactin and regulate MT1-MMP trafficking and breast tumor cell invasion. European Journal of Cell Biology, Elsevier, 2012, 91 (11-12), pp.950 - 960. ⟨10.1016/j.ejcb.2012.07.001⟩. ⟨hal-01712252⟩
    • Florence Bondon Broders, Florence Broders-Bondon, Perrine Paul-Gilloteaux, Camille Carlier, Glenn Radice, et al.. N-cadherin and β1-integrins cooperate during the development of the enteric nervous system. Developmental Biology, Elsevier, 2012, 364 (2), pp.178-191. ⟨10.1016/j.ydbio.2012.02.001⟩. ⟨hal-03043897⟩
    • Mohamed Husain, Thomas Boudier, Perrine Paul-Gilloteaux, Ignacio Casuso, Simon Scheuring. Software for drift compensation, particle tracking and particle analysis of high-speed atomic force microscopy image series †. Journal of Molecular Recognition, Wiley, 2012, 25 ((5)), pp.292-8. ⟨10.1002/jmr.2187⟩. ⟨inserm-01363229⟩
    • Florence Broders-Bondon, Perrine Paul-Gilloteaux, Camille Carlier, Glenn Radice, Sylvie Dufour. N-cadherin and β1-integrins cooperate during the development of the enteric nervous system. Developmental Biology, Elsevier, 2012, 364 (2), pp.178 - 191. ⟨10.1016/j.ydbio.2012.02.001⟩. ⟨hal-01712255⟩
    • Ignacio Casuso, Jonathan Khao, Mohamed Chami, Perrine Paul-Gilloteaux, Mohamed Husain, et al.. Characterization of the motion of membrane proteins using high-speed atomic force microscopy. Nature Nanotechnology, Nature Publishing Group, 2012, pp.525-529. ⟨10.1038/nnano.2012.109⟩. ⟨inserm-01363192⟩
    • Ignacio Casuso, Jean-Pierre Duneau, Mohamed Chami, Perrine Paul-Gilloteaux, Mohamed Husain, et al.. Complete Lateral and Angular Diffusion and Protein-Protein Interaction Description of a Membrane Protein. Biophysical Journal, Biophysical Society, 2012, 102 (3), pp.413a-414a. ⟨10.1016/j.bpj.2011.11.2261⟩. ⟨hal-02735811⟩
    • Paolo Maiuri, Emmanuel Terriac, Perrine Paul-Gilloteaux, Timothée Vignaud, Krista Mcnally, et al.. The first World Cell Race.. Current Biology - CB, Elsevier, 2012, 22 (17), pp.R673-5. ⟨10.1016/j.cub.2012.07.052⟩. ⟨hal-00744751⟩
    • Perrine Paul, Heiko Duessmann, Tytus Bernas, Heinrich Huber, Dimitrios Kalamatianos. Automatic noise quantification for confocal fluorescence microscopy images. Computerized Medical Imaging and Graphics, Elsevier, 2010, 34 (6), pp.426-434. ⟨10.1016/j.compmedimag.2010.04.001⟩. ⟨hal-02735528⟩
    • Jakub Wenus, Heiko Dussmann, Perrine Paul, Dimitrios Kalamatianos, Markus Rehm, et al.. ALISSA: an automated live-cell imaging system for signal transduction analyses. Biotechniques, Eaton Publishing, 2009, 47 (6), pp.1033-1040. ⟨10.2144/000113247⟩. ⟨hal-02735355⟩
    • Perrine Paul, Xavier Morandi, Pierre Jannin. A surface registration method for quantification of intraoperative brain deformations in image-guided neurosurgery.. IEEE Transactions on Information Technology in Biomedicine, Institute of Electrical and Electronics Engineers, 2009, 13 (6), pp.976-83. ⟨10.1109/TITB.2009.2025373⟩. ⟨inserm-00546498⟩
    • Perrine Paul, Oliver Fleig, Pierre Jannin. Augmented virtuality based on stereoscopic reconstruction in multimodal image-guided neurosurgery: methods and performance evaluation.: Augmented Virtuality Based on Stereoscopic Reconstruction in Multimodal Image-Guided Neurosurgery: Methods and Performance Evaluation. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2005, 24 (11), pp.1500-11. ⟨10.1109/TMI.2005.857029⟩. ⟨inserm-00136469⟩

    Conference papers48 documents

    • Perrine Paul-Gilloteaux. French gastronomy and bio image analysis workflows. Virtual Analytical and Quantitative Microscopy, May 2020, Woods Hole, United States. ⟨hal-02736886⟩
    • Perrine Paul-Gilloteaux, Laurence Dubreil. Le dorica castra des images. Nuit Blanche des Chercheurs, Feb 2020, Nantes, France. ⟨hal-02509532⟩
    • Stephan Kunne, Guillaume Potier, Jean Merot, Perrine Paul-Gilloteaux. Cross-modal registration using point clouds and graph-matching in the context of correlative microscopies. iTWIST : international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques, Dec 2020, Nantes, France. ⟨hal-03039114⟩
    • Perrine Paul-Gilloteaux, Martin Schorb. Introduction to transformations and registrations. High-Accuracy CLEM: Applications at Room Temperature and in cryo, Apr 2019, Heidelberg, Germany. ⟨hal-02746707⟩
    • Perrine Paul-Gilloteaux. Interdisciplinarity in a (still short) carreer: living and contributing to the creation of a new research field in biomedical image informatics.. Opening conference of Angers Summer schools, Jun 2019, Angers, France. ⟨hal-02745462⟩
    • Perrine Paul-Gilloteaux. Advanced Image analysis. Analytical & Quantitative Light Microscopy, May 2019, Woods Hole, United States. ⟨hal-02736802⟩
    • Marco Castagna, Sébastien Levilly, Perrine Paul-Gilloteaux, Félicien Bonnefoy, Jérôme Idier, et al.. An in Vitro and in Silico Validation Study for PC MRI and Derived Bio‐markers. 31st Society for Magnetic Resonance Angiography conference (SMRA 2019), Aug 2019, Nantes, France. ⟨hal-03130185⟩
    • Perrine Paul-Gilloteaux. Introduction to Correlation Software in CLEM. Correlated Multimodal Imaging Conference, Nov 2019, Vienne, Austria. ⟨hal-02744299⟩
    • Perrine Paul-Gilloteaux. RECALAGE EN MICROSCOPIES CORRÉLATIVES POUR LA CARACTÉRISATION PHYSIOPATHOLOGIQUE DE LA VALVULOPATHIE. 16eme colloque de la société Française des Microscopies, Jul 2019, Poitiers, France. ⟨hal-02745967⟩
    • Perrine Paul-Gilloteaux. Linking cell scales: methods and software for correlative imaging workflows. La microscopie électronique pour les sciences du vivant. Journées Scientifiques de l'Université de Nantes, Jun 2019, Nantes, France. ⟨hal-02745260⟩
    • Perrine Paul-Gilloteaux. Les bases de données images: limitations et aspirations. Journée partenaire industriel GDR IMABIO, Jun 2019, Paris, France. ⟨hal-02745126⟩
    • Kota Miura, Sebastian Munck, Florian Levet, Gabriel Martins, Fabrice Cordelières, et al.. NEUBIAS: BIOIMAGE ANALYSTS NETWORK TO SUPPORT LIFE SCIENTISTS THROUGH TRAINING, ONLINE TOOLS REPOSITORIES AND BENCHMARKING DEPLOYMENT FOR BIOIMAGE ANALYSIS WORKFLOWS. Focus on Microscopy, Apr 2019, Londres, United Kingdom. ⟨hal-02746229⟩
    • Perrine Paul-Gilloteaux. Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal Acquisitions. SCANDEM 2019, Jun 2019, Gothenburg, Sweden. ⟨hal-02736339⟩
    • Perrine Paul-Gilloteaux. Bio-Imagerie: mathématiques et informatique pour la compréhension du vivant. Immersion Science, Mar 2018, Ile Tudy, France. ⟨hal-02736939⟩
    • Perrine Paul-Gilloteaux. Constructing workflows in Bio Image Analysis. Analytical & Quantitative Light Microscopy, May 2018, Woods Hole, United States. ⟨hal-02736843⟩
    • Perrine Paul-Gilloteaux. COMULIS, a new network to bridge (pre) clinical imaging and correlative Light Electron microscopy. Focus on multidimensional registration software. ASCB-EMBO 2018, Dec 2018, San Diego, United States. ⟨hal-02736408⟩
    • Perrine Paul-Gilloteaux. Computer vision methods for multidimensional correlative microscopies. Journées communes des GdR MIA et ImaBio "Microscopie et traitement d'image", Nov 2018, Strasbourg, France. ⟨hal-02736491⟩
    • Perrine Paul-Gilloteaux. Automatic registration for multidimensional correlative microscopies with error assessment and detections of deformations. International Microscopy Congress, Sep 2018, Sydney, Australia. ⟨hal-02736564⟩
    • Perrine Paul-Gilloteaux. Computer vision methods for multidimensional correlative microscopies: optimizing acquisitions using maths. Colloqium: Future Microscopy and Analysis, Nov 2018, Ghent, Belgium. ⟨hal-02736454⟩
    • Perrine Paul-Gilloteaux. Bio-image DATA in Life Sciences Research Infrastructures. From SCRATCH to intelligent integrated solutions. Storage Day, Jan 2018, Paris, France. ⟨hal-02737009⟩
    • Perrine Paul-Gilloteaux. Challenges in image correlation for CLEM (and partial solutions). Crick Electron Microscopy Opening Symposium, Jul 2017, Londres, United Kingdom. ⟨hal-02747126⟩
    • Perrine Paul-Gilloteaux. Flexible multidimensional registration software for correlative microscopies with refined accuracy mapping: eC-CLEM easy Cell Correlative Light to Electron Microscopy. Symposium and Workshop on correlative light, electron, and X-ray microscopy, Mar 2017, Harwell, United Kingdom. ⟨hal-02747152⟩
    • Perrine Paul-Gilloteaux, Martin Schorb. Introduction to transformations and registrations. High-Accuracy CLEM: Applications at Room Temperature and in cryo, Dec 2017, Heidelberg, Germany. ⟨hal-02746508⟩
    • Perrine Paul-Gilloteaux. Gestion et analyse d’images à moyen débit : exemple en microscopie confocale et sur lames virtuelles. Quand la bio-imagerie rencontre la bio-informatique : vers une intégration des données hétérogènes. Journée d'animation Biogenouest, Oct 2017, Rennes, France. ⟨hal-02745560⟩
    • Sébastien Levilly, Jérôme Idier, Félicien Bonnefoy, David Le Touzé, Perrine Paul-Gilloteaux, et al.. Filtrage spatio-temporel en IRM de flux sanguin 4D. XXVIème colloque GRETSI sur le Traitement du Signal et des Images, Sep 2017, Juan-Les-Pins, France. ⟨hal-01720339⟩
    • Perrine Paul-Gilloteaux, Xavier Heiligenstein. Le recalage d'image sous ICY. Journée Thématique conjointe sur le repositionnement et la relocalisation/recalage, Nov 2017, Orléans, France. ⟨hal-02746899⟩
    • Perrine Paul-Gilloteaux. Besoins en bio-informatique liés àl’activité de l’infrastructure nationale France Bio Imaging. Assemblée générale de l'INBS Institut Français de Bioinformatique, Jan 2017, paris, France. ⟨hal-02747035⟩
    • Perrine Paul-Gilloteaux. Multiscale and multidimensional Image registration for CLEM : techniques and pitfalls. High-Accuracy Correlated Light and Electron Microscopy: Applications at Room Temperature and in Cryo, Apr 2016, Heildelberg, Germany. ⟨hal-02746687⟩
    • Perrine Paul-Gilloteaux. Le numérique dans les biotechnologies: exemple de la bio imagerie. TechnoConférence Pole Image et Réseau #17, Jun 2016, Nantes, France. ⟨hal-02746143⟩
    • Perrine Paul-Gilloteaux. Cycle de vie des images en microscopie : de l’acquisition au partage des données. La diversité tumorale à travers les plateformes technologiques franciliennes, Jan 2016, Paris, France. ⟨hal-02746957⟩
    • Perrine Paul-Gilloteaux. Ec-CLEM: an open source plugin for CLEM image and volume registration. EMBL Workshop: From 3D Light to 3D Electron Microscopy, Mar 2016, Heidelberg, Germany. ⟨hal-02746474⟩
    • Perrine Paul-Gilloteaux. Methodes de traitement et analyse d’images comme aide à la quantification des biomarqueurs en imagerie: de l’in vitro à la clinique. Ateliers du DHU2020, Jun 2015, Nantes, France. ⟨hal-02908867⟩
    • Perrine Paul-Gilloteaux. Gestion du cycle de vie des images en microscopie pour la biologie: Extraction de connaissances à partir d’une base de données images. Séminaire de l'INRA OPEN DATA, Dec 2015, Montpellier, France. ⟨hal-02908891⟩
    • Perrine Paul-Gilloteaux, Corinne Laplace-Builhé. Développement et déploiement d’une base de données image commune : bilan. Imagerie et cancers : optique et imagerie multiphotonique, Sep 2014, Paris, France. ⟨hal-02746819⟩
    • Solene Ozere, Patrick Bouthemy, Fabien Spindler, Perrine Paul-Gilloteaux, Charles Kervrann. Robust parametric stabilization of moving cells with intensity correction in light microscopy image sequences. ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.468-471, ⟨10.1109/ISBI.2013.6556513⟩. ⟨hal-00931371⟩
    • Denis Fortun, Patrick Bouthemy, Perrine Paul-Gilloteaux, Charles Kervrann. Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging. ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.660-663, ⟨10.1109/ISBI.2013.6556561⟩. ⟨hal-00931377⟩
    • Denis Fortun, Chen Chen, Perrine Paul-Gilloteaux, François Waharte, Jean Salamero, et al.. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. EUSIPCO 2013 - European Signal Processing Conference, Sep 2013, Marrakech, Morocco. pp.1-5. ⟨hal-00931408⟩
    • Denis Fortun, Chen Chen, Perrine Paul-Gilloteaux, François Waharte, Jean Salamero, et al.. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. European Light Microscopy Initiative (ELMI'13), May 2013, Arcachon, France. ⟨hal-00931593⟩
    • Perrine Paul-Gilloteaux, Renata Basto, Veronique Marthiens. Computational modeling of the consequences of embryonic neurogenesis disorders. Molecular Biology of The Cell. ASCB, 2013, Nouvelle-Orleans, United States. pp.3775-3775, ⟨10.1091/mbc.E13-10-0584⟩. ⟨hal-02908946⟩
    • C. Chen, P. Paul-Gilloteaux, T. Vignaud, J. Salamero, F. Waharte. Developpement des methodes de correlation d images pour l analyse de la mobilite moleculaire dans un systeme biologique complexe spatialement et temporellement. OPTDIAG, May 2012, Paris, France. ⟨hal-02746408⟩
    • Perrine Paul-Gilloteaux. Image Data Base on a microscopy facility: Presentation and use for remote collaborations. Nouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France. ⟨hal-02746303⟩
    • Perrine Paul-Gilloteaux, Elisabetta Padovan, Claire Hivroz. Study of the 3D repartition of vesicles normalized by the distance to the cell periphery. Focus On Microscopy, Apr 2011, Konstanz, Germany. ⟨hal-02746059⟩
    • Perrine Paul, Dimitrios Kalamatianos, Heiko Duessmann, Heinrich Huber. Automatic quality assessment for fluorescence microscopy images. 2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE), Oct 2008, Athens, France. pp.1-6, ⟨10.1109/BIBE.2008.4696665⟩. ⟨hal-02735370⟩
    • Christian Barillot, Pierrick Coupé, Bernard Gibaud, Pierre Hellier, Pierre Jannin, et al.. Image Guidance in neurosurgical procedures, the "VISAGES" point of view. 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2007, Arlington, United States. pp.1056-1059, ⟨10.1109/ISBI.2007.357037⟩. ⟨inserm-00152147⟩
    • Perrine Paul, Xavier Morandi, Pierre Jannin, Julien Cohen-Adad. Knowledge modeling in image guided neurosurgery: application in understanding intra-operative brain shift. SPIE Medical Imaging 2006: Visualization, Image-Guided Procedures and Display, Mar 2006, San Diego, United States. ⟨10.1117/12.655752⟩. ⟨inserm-00147527⟩
    • Perrine Paul, Aurélie Quere, Elise Arnaud, Xavier Morandi, Pierre Jannin. A surface registration approach for video-based analysis of intraoperative brain surface deformations. Oct 2006, pp.0. ⟨inserm-00109455⟩
    • Perrine Paul, Oliver Fleig, Xavier Morandi, Pierre Jannin. Virtualité augmentée en neurochirurgie guidée par l'image. 2005, pp.99-104. ⟨inserm-00138138⟩
    • Perrine Paul, Oliver Fleig, Sabine Tranchant, Pierre Jannin. Performance Evaluation of a Stereoscopic Based 3D Surface Localiser for Image-Guided Neurosurgery. MICCAI, Sep 2004, Saint-Malo, France. pp.510-517, ⟨10.1007/978-3-540-30136-3_63⟩. ⟨hal-02735433⟩

    Poster communications6 documents

    • Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, et al.. EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019). 3rd NEUBIAS Bioimage Analysis Community Conference 2019, Jun 2020, Luxembourg, Luxembourg. ⟨hal-02910949⟩
    • Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, et al.. EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020). ELIXIR All Hands 2020, Jun 2020, Virtual, United Kingdom. ⟨hal-02910948⟩
    • Guillaume Potier, Stephan Kunne, Frédéric Lavancier, Perrine Paul-Gilloteaux. Registration and error estimation in correlated multimodal imaging. Correlated Multimodal Imaging Conference, Nov 2019, Vienna, Austria. ⟨hal-02744368⟩
    • Marine Malloci, Stéphanie Blandin, Paul Dorval, Philippe Hulin, Pierre-Alix Dancer, et al.. Analyse d’un échantillon en 3 dimensions par une technique de Serial Block Face Imaging amovible. AFH 2019, Jun 2019, Strasbourg, France. ⟨hal-02267585⟩
    • Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, et al.. EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats. NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩. ⟨hal-02267597⟩
    • Sébastien Levilly, Jérôme Idier, David Le Touzé, Perrine Paul-Gilloteaux, Félicien Bonnefoy, et al.. Spatio-temporal filtering of blood flow in 4D Phase-Contrast MRI. Society for Magnetic Resonance Angiography, 29th Annual International Conference (SMRA 2017), Oct 2017, Stellenbosch, South Africa. 61, pp.3163 - 3178, 2015. ⟨hal-01720378⟩

    Book sections7 documents

    • Martin Schorb, Perrine Paul-Gilloteaux. Resolving the Process of Clathrin Mediated Endocytosis Using Correlative Light and Electron Microscopy (CLEM). Bioimage Data Analysis Workflows. Learning Materials in Biosciences. Springer, Cham, pp.143-166, 2020, ⟨10.1007/978-3-030-22386-1_6⟩. ⟨hal-02735825⟩
    • Kota Miura, Perrine Paul-Gilloteaux, Sébastien Tosi, Julien Colombelli. Workflows and Components of Bioimage Analysis. Bioimage Data Analysis Workflows. Learning Materials in Biosciences. Springer, Cham, pp.1-7, 2020, ⟨10.1007/978-3-030-22386-1_1⟩. ⟨hal-02735486⟩
    • Perrine Paul-Gilloteaux, Martin Schorb. Correlating Data from Imaging Modalities. Correlative Imaging: Focusing on the Future, Wiley, 2019, ⟨10.1002/9781119086420.ch11⟩. ⟨hal-02735744⟩
    • Perrine Paul-Gilloteaux, François Waharte, Manish Kumar Singh, Maria Carla Parrini. A Biologist-Friendly Method to Analyze Cross-Correlation Between Protrusion Dynamics and Membrane Recruitment of Actin Regulators. Methods Mol Biol, pp.279-289, 2018. ⟨hal-02267604⟩
    • Perrine Paul-Gilloteaux, Christoph Möhl. Cell Polarity: Focal Adhesion and Actin Dynamics in Migrating Cells. Kota Miura. Bioimage Data Analysis, Wiley-VCH, pp.198-218, 2016, 978-3-527-80092-6. ⟨hal-02910995⟩
    • Perrine Paul-Gilloteaux, Sébastien Tosi. Quantitative Evaluation of Multicellular Movements in Drosophila Embryo. Kota Miura. Bioimage Data Analysis, Wiley-VCH, 2016, 978-3-527-80092-6. ⟨hal-02910999⟩
    • Kota Miura, Sébastien Tosi, Christoph Möhl, Chong Zhang, Perrine Paul-Gilloteaux, et al.. Bioimage Analysis Tools. Kota Miura. Bioimage Data Analysis, Wiley-VCH, 2016, 978-3-527-80092-6. ⟨hal-02910986⟩

    Patents1 document

    • Heinrich Huber, Heiko Dussmann, Perrine Paul-Gilloteaux, Jakub Wenus, Dimitrios Kalamatianos, et al.. Microscopy control system and method. United States, Patent n° : US 2010/0251438 A1. 2010, https://patentimages.storage.googleapis.com/bb/3d/c1/00174666d137a7/US20100251438A1.pdf. ⟨hal-02735674⟩

    Other publications5 documents

    • Perrine Paul-Gilloteaux. NEUBIAS WEBTOOL biii.eu A unique database of image processing, analysis tools and workflows for and by the bioimaging community. F1000Research NEUBIAS gateway, 2020, ⟨10.7490/f1000research.1117948.1⟩. ⟨hal-02744892⟩
    • Chandrou Koumar, Perrine Paul-Gilloteaux. Rythme'n'Sciences #2 : Intelligence Artificielle et Pop Music. 2017, https://youtu.be/FmxKvzjR8hM. ⟨hal-02737062⟩
    • Perrine Paul-Gilloteaux, Kota Miura, Sébastien Tosi. Organization and Teaching EMBL Course Bio Image Data ANalysis. 2017. ⟨hal-02746591⟩
    • Perrine Paul-Gilloteaux, Kota Miura, Sébastien Tosi. Organization and Teaching EMBL Course Bio Image Data Analysis. 2016. ⟨hal-02746656⟩
    • Perrine Paul-Gilloteaux, Kota Miura, Sébastien Tosi. Organization and Teaching EMBL Course Bio Image Data Analysis. 2015. ⟨hal-02746618⟩

    Preprints, Working Papers, ...7 documents

    • Guillaume Potier, Frédéric Lavancier, Stephan Kunne, Perrine Paul-Gilloteaux. A registration error estimation framework for correlative imaging. 2021. ⟨hal-03169030⟩
    • Nadav Scher, Katya Rechav, Perrine Paul-Gilloteaux, Ori Avinoam. In-situ fiducial markers for 3D correlative cryo- fluorescence and FIB-SEM imaging. 2021. ⟨hal-03171819⟩
    • Glyn Nelson, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, et al.. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. 2021. ⟨hal-03120748⟩
    • Gloria Volohonsky, Perrine Paul-Gilloteaux, Jitka Štáfková, Julien Soichot, Jean Salamero, et al.. Kinetics of Plasmodium midgut invasion in Anopheles mosquitoes. 2020. ⟨hal-02509933⟩
    • Ilias Kounatidis, Megan Stanifer, Michael Phililips, Perrine Paul-Gilloteaux, Xavier Heiligenstein, et al.. Correlative cryo-structured illumination fluorescence microscopy and soft X-ray tomography elucidates reovirus intracellular release pathway. 2020. ⟨hal-02509948⟩
    • Marco Castagna, Sébastien Levilly, Perrine Paul-Gilloteaux, Saïd Moussaoui, J.M. Rousset, et al.. An LDV based method to quantify PC MRI derived Wall Shear Stress measurement error. 2020. ⟨hal-02565193⟩
    • Ulysse Rubens°, Romain Mormont°, Volker Baecker, Gino Michiels, Lassi Paavolainen, et al.. BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows. 2019. ⟨hal-02267577⟩

    Reports1 document

    • Perrine Paul-Gilloteaux, Jason Swedlow, Gabriella Rustici. Euro BioImaging Preparatory Phase II Project. [Other] Euro-Bioimaging. 2016. ⟨hal-03085833⟩

    Theses1 document

    • Perrine Paul-Gilloteaux. Neurochirurgie guidée par l'image : visualisation mixte et quantification des déformations cérébrales peropératoires à l'aide de reconstructions stéréoscopiques de la surface corticale. Vision par ordinateur et reconnaissance de formes [cs.CV]. Universite de Rennes 1, 2006. Français. ⟨tel-02908473⟩