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Perrine Paul-Gilloteaux
61%
Libre accès
36
Documents
Affiliations actuelles
Identifiants chercheurs
- perrine-paul-gilloteaux
- 0000-0002-4822-165X
- IdRef : 236865714
- ResearcherId : L-8287-2018
- Arxiv : paulgilloteaux_p_1
- ResearcherId : http://www.researcherid.com/rid/L-8287-2018
Présentation
I'm a CNRS Research Engineer, specialized in computer vision and bio image analysis.
After my electrical engineering studies, with a computer vision option, I did my PhD with a company (Medtronic Surgical Navigation, Boulder USA) and the ViSages team (INRIA, INSERM, CNRS) under the supervision of Dr. Pierre Jannin.
I was working on the tracking of deformations of the brain during craniotomy in brain surgery, in order to relocate information from different exams of the patient , in particular indicated functional areas, such as language or motor area of the brain and to display them in the surgical microscope. For this, I was creating stereoscopic reconstruction from the surgical microscope binocular, and I developed a new method for the tracking of surface deformation, based on an hybrid approach of point cloud registration and of video tracking.
I did a first postdoc as experienced Researcher in a Marie-Curie network, ARIS\*ER to work on augmented reality in surgery, and in particular the segmentation of tumors in ultrasound based on wavelet analysis of the ultrasound raw signal.
I then got a post-doc position in Maynooth, Ireland (close to Dublin), in the Hamilton Institute which is an applied mathematics institute. I was in the Systems Biology group, where I've developed with my colleagues an intelligent fluorescent microscope, taking the decision of the area to image and of the frequency of acquisition, based on real time analysis of the image content (cell segmentation and cell tracking).
In 2010, I joined the CNRS as research Engineer in the PICT IBISA cell and tissue microscopy facility in Institut Curie, Paris, France. My job was to support the biologists in image analysis, by adapting existing sofwtare or developping new methods.
In June 2015, I've joined the [Structure Federative de Recherche in Health](https://sfrsante.univ-nantes.fr/) of Nantes (France), where I work for the facility, and on my own research activities
I am now leading R&D activities in multimodal image analysis, through the [ANR CROCOVAL](https://anrcrocoval.github.io/) , and heading [MicroPICell](https://micropicell.univ-nantes.fr/), a microscopy facility performing services and R& D in histology, photonic microscopy and image analysis and management. I am one of the co-funder of COST action [NEUBIAS](http://www.neubias.org), for which I lead the group creating [biii.eu](http://www.biii.eu) and [edam bio imaging](https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING?p=classes) and is part of the core group managing the full network, and vice chair and the [COMULIS](https://www.comulis.eu/) COST action.
Domaines de recherche
Publications
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Linking and analyzing correlative datasetsALL-HANDS NODES MEETINg&MORE, iNext DISCOVERY, Apr 2023, Heidelberg, Germany
Communication dans un congrès
hal-04217201v1
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France Bio Imaging : setting up image data management solutions at the national levelBioImaging and the European Open Science Cloud, EOSC-Life, Apr 2023, Heidelberg, Germany
Communication dans un congrès
hal-04217222v1
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Correlative microscopies : comulisglobe and news from ec-clemFrance BioImaging CLEM day: What's new in multimodal imaging, Mar 2023, Paris, France
Communication dans un congrès
hal-04217188v1
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Image processing and analysis in clem : methods and pitfallsSymposium on recent developments in cellular electron microscopy, AVIESAN ITMO MOLECULAR AND STRUCTURAL BASIS OF LIFE SCIENCES, Mar 2022, Paris, France
Communication dans un congrès
hal-04217262v1
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A Registration Error Estimation Framework for Correlative Imaging2021 IEEE International Conference on Image Processing (ICIP), Sep 2021, Anchorage, United States. pp.131-135, ⟨10.1109/ICIP42928.2021.9506474⟩
Communication dans un congrès
hal-03327500v1
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Les bases de données images: limitations et aspirationsJournée partenaire industriel GDR IMABIO, Jun 2019, Paris, France
Communication dans un congrès
hal-02745126v1
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Bio-image DATA in Life Sciences Research Infrastructures. From SCRATCH to intelligent integrated solutionsStorage Day, Jan 2018, Paris, France
Communication dans un congrès
hal-02737009v1
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Besoins en bio-informatique liés àl’activité de l’infrastructure nationale France Bio ImagingAssemblée générale de l'INBS Institut Français de Bioinformatique, Jan 2017, paris, France
Communication dans un congrès
hal-02747035v1
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Cycle de vie des images en microscopie : de l’acquisition au partage des donnéesLa diversité tumorale à travers les plateformes technologiques franciliennes, Jan 2016, Paris, France
Communication dans un congrès
hal-02746957v1
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Le numérique dans les biotechnologies: exemple de la bio imagerieTechnoConférence Pole Image et Réseau #17, Jun 2016, Nantes, France
Communication dans un congrès
hal-02746143v1
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Ec-CLEM: an open source plugin for CLEM image and volume registrationEMBL Workshop: From 3D Light to 3D Electron Microscopy, Mar 2016, Heidelberg, Germany
Communication dans un congrès
hal-02746474v1
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Gestion du cycle de vie des images en microscopie pour la biologie: Extraction de connaissances à partir d’une base de données imagesSéminaire de l'INRA OPEN DATA, Dec 2015, Montpellier, France
Communication dans un congrès
hal-02908891v1
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Développement et déploiement d’une base de données image commune : bilanImagerie et cancers : optique et imagerie multiphotonique, Sep 2014, Paris, France
Communication dans un congrès
hal-02746819v1
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Image Data Base on a microscopy facility: Presentation and use for remote collaborationsNouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France
Communication dans un congrès
hal-02746303v1
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Developpement des methodes de correlation d images pour l analyse de la mobilite moleculaire dans un systeme biologique complexe spatialement et temporellementOPTDIAG, May 2012, Paris, France
Communication dans un congrès
hal-02746408v1
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Computer-assisted analysis of multimodal image data—perspectives and conclusionImaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2, IOP Publishing, 2021, ⟨10.1088/978-0-7503-3747-2ch30⟩
Chapitre d'ouvrage
hal-03232548v1
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QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy2023
Pré-publication, Document de travail
hal-03120748v1
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Label-free imaging of large samples: 3D rendering and morphological analysis within histological workflows using serial block face imaging2022
Pré-publication, Document de travail
hal-03745095v1
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Euro BioImaging Preparatory Phase II Project[0] Euro-Bioimaging. 2016
Rapport
hal-03085833v1
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