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nosoi: A stochastic agent‐based transmission chain simulation framework in r
Sebastian Lequime
,
Paul Bastide
,
Simon Dellicour
,
Philippe Lemey
,
Guy Baele
Article dans une revue
hal-02988215v1
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The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution
Paul Bastide
,
Gilles Didier
Article dans une revue
hal-04061506v2
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PhyloNetworks: A package for phylogenetic networks
Claudia Solís-Lemus
,
Paul Bastide
,
Céline Ané
Article dans une revue
hal-02624465v1
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Detection of adaptive shifts on phylogenies by using shifted stochastic processes on a tree
Paul Bastide
,
Mahendra Mariadassou
,
Stephane Robin
Article dans une revue
hal-01551071v1
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Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework
Paul Bastide
,
Charlotte Soneson
,
Olivier Lespinet
,
Mélina Gallopin
2022
Pré-publication, Document de travail
hal-03837544v1
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The evolution of Ericaceae flowers and their pollination syndromes at a global scale
Ricardo Kriebel
,
Jeffrey Rose
,
Paul Bastide
,
Diana Jolles
,
Marcelo Reginato
,
et al.
Article dans une revue
hal-04235491v1
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Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots
Mélina Gallopin
,
Christine Drevet
,
Vanesa S. Garcia de la Torre
,
Sarah Jelassi
,
Marie Michel
,
et al.
2022
Pré-publication, Document de travail
hal-03835818v1
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Multiple factors behind early diversification of skull morphology in the continental radiation of New World monkeys
Leandro Aristide
,
Paul Bastide
,
Sergio Furtado dos Reis
,
Thaís Pires dos Santos
,
Ricardo Lopes
,
et al.
Evolution - International Journal of Organic Evolution, 2018, 72 (12), pp.2697-2711. ⟨10.1111/evo.13609⟩
Article dans une revue
hal-02883478v1
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Shifted stochastic processes evolving on trees : application to models of adaptive evolution on phylogenies.
Paul Bastide
Thèse
tel-01629648v1
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Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST
Guy Baele
,
Mandev Gill
,
Paul Bastide
,
Philippe Lemey
,
Marc Suchard
Article dans une revue
hal-02988204v1
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EvoLaps 2 : Advanced phylogeographic visualization
François Chevenet
,
Denis Fargette
,
Paul Bastide
,
Thomas Vitré
,
Stéphane Guindon
Article dans une revue
hal-04531387v1
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Phylogenetic comparative methods on phylogenetic networks with reticulations
Paul Bastide
,
Claudia Solís-Lemus
,
Ricardo Kriebel
,
K William Sparks
,
Cécile, Marie, Odile Ane
Systematic Biology, 2018, 67 (5), pp.800-820
Article dans une revue
hal-02625224v1
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Inference of Adaptive Shifts for Multivariate Correlated Traits
Paul Bastide
,
Céline Ané
,
Stephane Robin
,
Mahendra Mariadassou
Article dans une revue
hal-01608932v1
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A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data
Paul Bastide
,
Charlotte Soneson
,
David Stern
,
Olivier Lespinet
,
Mélina Gallopin
Article dans une revue
hal-04011083v1
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Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework
Simon Dellicour
,
Sebastian Lequime
,
Bram Vrancken
,
Mandev S Gill
,
Paul Bastide
,
et al.
Article dans une revue
hal-03254476v1
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Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
Zhenyu Zhang
,
Akihiko Nishimura
,
Paul Bastide
,
Xiang Ji
,
Rebecca Payne
,
et al.
Article dans une revue
hal-03254483v1
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Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
Paul Bastide
,
Lam Si Tung Ho
,
Guy Baele
,
Philippe Lemey
,
Marc Suchard
Article dans une revue
hal-03365716v1
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Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley
Souley Issaka
,
Oumar Issiaka I. Traore
,
Régis Dimitri Skopé Longué
,
Agnès Pinel-Galzi
,
Mandev S. Gill
,
et al.
Article dans une revue
hal-03365735v1
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