Nombre de documents

113

Paul-Henry Cournède


2009 HDR Montpellier University

2001 PhD in Applied Mathematics, Ecole Centrale Paris

1997 Ingénieur Ecole Centrale Paris

1997 Certificate of Advanced Studies in Mathematics, Part III, Cambridge University

1992-1994 BJ      

 

 


Article dans une revue53 documents

  • Julien Sainte-Marie, Gautier Viaud, Paul-Henry Cournède. Indices de Sobol généralisés aux variables dépendantes : tests de performance de l’algorithme HOGS couplé à plusieurs estimateurs paramétriques. Journal de la Société Française de Statistique, Société Française de Statistique et Société Mathématique de France, 2017, 158 (1), pp.68-89. 〈http://publications-sfds.math.cnrs.fr/index.php/J-SFdS/article/view/603〉. 〈hal-01630985〉
  • Robert Beyer, Veronique Letort, Dominik Bayer, Hans Pretzsch, Paul-Henry Cournède. Leaf density-based modelling of phototropic crown dynamics and long-term predictive application to European beech. Ecological Modelling, Elsevier, 2017, 347, pp.63 - 71. 〈10.1016/j.ecolmodel.2016.12.012〉. 〈hal-01630989〉
  • Robert Beyer, Dominik Bayer, Veronique Letort, Hans Pretzsch, Paul-Henry Cournède. Validation of a functional-structural tree model using terrestrial Lidar data. Ecological Modelling, Elsevier, 2017, 357, pp.55 - 57. 〈10.1016/j.ecolmodel.2017.02.018〉. 〈hal-01630981〉
  • Paul-Henry Cournède, Robert Beyer, Dominik Bayer, Hans Pretzsch. Reconstructing minimal length tree branch systems from leaf positions. Ecological Informatics, Elsevier, 2017, 42, pp.61 - 66. 〈10.1016/j.ecoinf.2017.09.010〉. 〈hal-01630979〉
  • Gautier Viaud, Olivier Loudet, Paul-Henry Cournede. Leaf segmentation and tracking in arabidopsis thaliana combined to an organ-scale plant model for genotypic differentiation. Frontiers in Plant Science, Frontiers, 2017, 7, pp.1-14. 〈10.3389/fpls.2016.02057〉. 〈hal-01602596〉
  • David Gonzalez-Rodriguez, Paul-Henry Cournède, Emmanuel De Langre. Turgidity-dependent petiole flexibility enables efficient water use by a tree subjected to water stress. Journal of Theoretical Biology, Elsevier, 2016, 398, pp.20-31. 〈10.1016/j.jtbi.2016.03.011〉. 〈hal-01323343〉
  • Konstantinos Koutroumpas, Paolo Ballarini, Irene Votsi, Paul-Henry Cournède. Bayesian parameter estimation for the Wnt pathway: an infinite mixture models approach. Bioinformatics, Oxford University Press (OUP), 2016, 32 (17), pp.781-789. 〈https://academic.oup.com/bioinformatics/article/32/17/i781/2450800/Bayesian-parameter-estimation-for-the-Wnt-pathway〉. 〈hal-01525063〉
  • Chloé Adam, Antoine Aliotti, Paul-Henry Cournède. Learning from User Workflows for the Characterization and Prediction of Software Crashes. 2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW), 2016, pp.1023 - 1030. 〈10.1109/ICDMW.2016.0148〉. 〈hal-01616232〉
  • Charlotte Baey, Samis Trevezas, Paul-Henry Cournède. A nonlinear mixed effects model of plant growth and estimation via stochastic variants of the EM algorithm.. Communications in Statistics - Theory and Methods, 2015, pp.00. 〈10.1080/03610926.2014.930909〉. 〈hal-01068327〉
  • Paul-Henry Cournède, Veronique Letort. Modeling tree crown dynamics with 3D partial differential equations. Frontiers in Plant Science, Frontiers, 2015, pp.8. 〈10.3389/fpls.2014.00329〉. 〈hal-01170558〉
  • Yuting Chen, Samis Trevezas, Paul-Henry Cournède. A Regularized Particle Filter EM Algorithm Based on Gaussian Randomization with an Application to Plant Growth Modeling. Methodology and Computing in Applied Probability, Springer Verlag, 2015, 17 (4), pp.847-870. 〈10.1007/s11009-015-9440-0〉. 〈hal-00997732〉
  • Corina Iovan, Paul-Henry Cournède, Thomas Guyard, Benoît Bayol, Dider Boldo, et al.. Model-Based Analysis-Synthesis for Realistic Tree Reconstruction and Growth Simulation. IEEE Transactions on Geoscience and Remote Sensing, Institute of Electrical and Electronics Engineers, 2014, 52 (2), pp.1438-1450. 〈10.1109/TGRS.2013.2251467〉. 〈hal-00826023〉
  • Yuting Chen, Paul-Henry Cournède. Data assimilation to reduce uncertainty of crop model prediction with convolution particle filtering. Ecological Modelling, Elsevier, 2014, in press. 〈10.1016/ j.ecolmodel. 2014.01.030〉. 〈hal-00997728〉
  • Charlotte Baey, Anne Didier, Sébastien Lemaire, Fabienne Maupas, Paul-Henry Cournède. Parametrization of five classical plant growth models applied to sugar beet and comparison of their predictive capacities on root yield and total biomass. Ecological Modelling, Elsevier, 2014, 290, pp.11-20. 〈10.1016/j.ecolmodel.2013.11.003〉. 〈hal-00919753〉
  • Fenni Kang, Paul-Henry Cournede, Jeremie Lecoeur, Véronique Letort. Sunlab: a Functional-Structural Model for Genotypic and Phenotypic Characterization of the Sunflower Crop. Ecological Modelling, Elsevier, 2014, 290, pp.21-33. 〈10.1016/j.ecolmodel.2014.02.006〉. 〈hal-01272125〉
  • Robert Beyer, Véronique Letort, Paul-Henry Cournède. Modeling tree crown dynamics with 3D partial differential equations. Frontiers in Plant Science, Frontiers, 2014, 5, pp.329. 〈10.3389/fpls.2014.00329〉. 〈hal-01272213〉
  • Paul-Henry Cournède, Yuting Chen, Qiongli Wu, Charlotte Baey, Benoît Bayol. Development and Evaluation of Plant Growth Models: Methodology and Implementation in the PYGMALION platform. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2013, 8 (4), pp.112-130. 〈hal-00860902〉
  • Charlotte Baey, Anne Didier, Lemaire Sébastien, Fabienne Maupas, Paul-Henry Cournède. Modelling the interindividual variability of organogenesis in sugar beet populations using a hierarchical segmented model. Ecological Modelling, Elsevier, 2013, 263, pp.56-63. 〈hal-00819919〉
  • Samis Trevezas, Paul-Henry Cournède. A sequential Monte Carlo approach for MLE in a plant growth model. Journal of Agricultural, Biological, and Environmental Statistics, Springer Verlag, 2013, pp.online first. 〈10.1007/s13253-013-0134-1〉. 〈hal-00796154〉
  • Katarina Smolenova, Winfried Kurth, Paul-Henry Cournède. Parallel Graph Grammars with Instantiation Rules Allow Efficient Structural Factorization of Virtual Vegetation. Electronic Communications of the EASST, 2012, pp.114-128. 〈hal-00872370〉
  • Amélie Mathieu, Veronique Letort, Paul-Henry Cournède, Baogui Zhang, Patrick Heuret, et al.. Oscillations in Functional Structural Plant Growth Models. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2012, 7 (6), pp.47-66. 〈10.1051/mmnp/20127603〉. 〈hal-00780592〉
  • Hong Guo, Xiangdong Lei, Paul-Henry Cournède, Veronique Letort. Characterization of the effects of inter-tree competition on source-sink balance in Chinese pine trees with the GreenLab model. Trees - Structure and Function, Springer Verlag, 2012, 26, pp.1057-1067. 〈10.1007/s00468-012-0683-x〉. 〈hal-00780354〉
  • Qiongli Wu, Paul-Henry Cournède, Amélie Mathieu. An efficient computational method for global sensitivity analysis and its application to tree growth modelling. Reliability Engineering and System Safety, Elsevier, 2012, 107, pp.35-43. 〈http://www.sciencedirect.com/science/article/pii/S0951832011001359〉. 〈10.1016/j.ress.2011.07.001〉. 〈hal-00639539〉
  • Lin Wu, François-Xavier Le Dimet, Philippe De Reffye, Bao-Gang Hu, Paul-Henry Cournède, et al.. An optimal control methodology for plant growth--Case study of a water supply problem of sunflower. Mathematics and Computers in Simulation, Elsevier, 2012, 82 (5), pp.909-923. 〈10.1016/j.matcom.2011.12.007〉. 〈hal-00705066〉
  • Paul-Henry Cournède, Veronique Letort, Amélie Mathieu, Meng Zhen Kang, Sébastien Lemaire, et al.. Some Parameter Estimation Issues in Functional-Structural Plant Modelling. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2011, 6 (2), pp.133-159. 〈10.1051/mmnp/20116205〉. 〈hal-00631509〉
  • Alexandra Jullien, Amélie Mathieu, Jean-Michel Allirand, Amélie Pinet, Paul-Henry Cournède, et al.. Characterization of the interactions between architecture and source-sink relationships in winter oilseed rape (Brassica napus) using the GreenLab model. Annals of Botany -London- Oup then Academic Press then Oxford University Press-, 2011, 107 (5), pp.765-779. 〈10.1093/aob/mcq205〉. 〈halsde-00613649〉
  • Yuntao Ma, A. M. Wubs, E. Heuvelink, Amélie Mathieu, J. Y. Zhu, et al.. Simulation of fruit-set and trophic competition and optimization of yield advantages in six Capsicum cultivars using functional-structural plant modelling. Annals of Botany -London- Oup then Academic Press then Oxford University Press-, 2011, 107 (5), pp.793-803. 〈10.1093/aob/mcq223〉. 〈halsde-00613645〉
  • Jessica Bertheloot, Paul-Henry Cournède, Bruno Andrieu. NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. I.Model description. Annals of Botany, Oxford University Press (OUP), 2011, 108 (6), pp.1085-1096. 〈10.1093/aob/mcr119〉. 〈hal-01019789〉
  • Alexandra Jullien, Amélie Mathieu, Jean-Michel Allirand, Amélie Pinet, P. De Reffye, et al.. Characterisation of the interactions between architecture and source-sink relationships in Winter Oilseed Rape (Brassica Napus L.) using the GreenLab model. Annals of Botany, Oxford University Press (OUP), 2011, 107 (5), pp.765-779. 〈hal-00872374〉
  • Jessica Bertheloot, Qiongli Wu, Paul-Henry Cournède, Andrieu Bruno. NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. II. Evaluation and sensitivity analysis. Annals of Botany, Oxford University Press (OUP), 2011, 108 (6), pp.1097-1109. 〈10.1093/aob/mcr125〉. 〈hal-00826101〉
  • Jessica Bertheloot, Paul-Henry Cournède, Bruno Andrieu. NEMA, a functional-structural model of N economy within wheat culms after flowering: I. Model description. Annals of Botany, Oxford University Press (OUP), 2011, 108 (6), pp.1085-1096. 〈hal-00872372〉
  • Xiujuan Wang, Amélie Mathieu, Paul-Henry Cournède, Alexandra Jullien, Jean-Michel Allirand, et al.. Variability and regulation of the number of ovules, seeds and pods according to assimilate availability in winter oilseed rape (Brassica napus L.). Field Crops Research, Elsevier, 2011, 122 (1), pp.60-69. 〈hal-00872375〉
  • Xiujuan Wang, Amélie Mathieu, Paul-Henry Cournède, Jean Michel Allirand, Alexandra Jullien, et al.. Variability and regulation of the number of ovules, seeds and pods according to assimilate availability in winter oilseed rape (Brassica napus L.).. Field Crops Research, Elsevier, 2011, 122 (1), pp.60-69. 〈10.1016/j.fcr.2011.02.008〉. 〈hal-01000492〉
  • Benoît Pallas, Cedric Loi, Angélique Christophe, Paul-Henry Cournède, Jérémy Lecoeur. Comparison of three approaches to model grapevine organogenesis in conditions of fluctuating temperature, solar radiation and soil water content. Annals of Botany, Oxford University Press (OUP), 2010, pp.Non connues. 〈inria-00546250〉
  • Rui Qi, Yuntao Ma, Baogang Hu, Phillipe De Reffye, Paul-Henry Cournède. Optimization of source-sink dynamics in plant growth for ideotype breeding: a case study on maize. Computers and Electronics in Agriculture, Elsevier, 2010, 71 (1), pp.96-105. 〈10.1016/j.compag.2009.12.008〉. 〈hal-00493526v3〉
  • Philippe De Reffye, Marc Jaeger, Paul-Henry Cournède. Une histoire de la modélisation des plantes. Interstices, INRIA, 2009, 〈https://interstices.info/jcms/c_38032/une-histoire-de-la-modelisation-des-plantes〉. 〈hal-01350407〉
  • Rui Qi, Véronique Letort, M. Z. Kang, Paul-Henry Cournède, Philippe De Reffye, et al.. Application of the GreenLab model to simulate and optimize wood production and tree stability: a theoretical study. Silva Fennica, Suomen Metsätieteellinen Seura ry, 2009, 43 (3), pp.465-487. 〈halsde-00436297〉
  • A. Mathieu, Paul-Henry Cournède, Véronique Letort, D. Barthélémy, P. De Reffye. A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition.. Annals of Botany, Oxford University Press (OUP), 2009, 103 (8), pp.1173-1186. 〈10.1093/aob/mcp054〉. 〈halsde-00418643〉
  • Benoit Pallas, Angélique Christophe, Paul-Henry Cournède, Jérémie Lecoeur. Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine (Vitis vinifera L.). Functional Plant Biology, CSIRO Publishing, 2009, 36, pp.156-170. 〈hal-00872383〉
  • Paul-Henry Cournède, Amélie Mathieu, François Houllier, Daniel Barthélémy, Philippe De Reffye. Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development.. Annals of Botany, Oxford University Press (OUP), 2008, 101 (8), pp.1207-1219. 〈10.1093/aob/mcm272〉. 〈halsde-00291875〉
  • Véronique Letort, Paul Mahe, Paul-Henry Cournède, Philippe De Reffye, Brigitte Courtois. Quantitative genetics and functional-structural plant growth models : Simulation of quantitative trait loci detection for model parameters and application to potential yield optimization. Annals of Botany, Oxford University Press (OUP), 2008, 101 (8), pp.1243-1254. 〈10.1093/aob/mcm197〉. 〈halsde-00288538〉
  • Yuntao Ma, Wen Meiping, Yan Guo, Baoguo Li, Paul-Henry Cournède, et al.. Parameter optimization and field validation of the functional-structural model GREENLAB for Maize at different population densities. Annals of Botany, Oxford University Press (OUP), 2008, 101 (8), pp.1185-1194. 〈10.1093/aob/mcm233〉. 〈halsde-00290415〉
  • Amélie Mathieu, Daniel Barthélémy, Paul-Henry Cournède, Philippe De Reffye. Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning. Annals of Botany, Oxford University Press (OUP), 2008, 101 (8), pp.1233-1242. 〈10.1093/aob/mcm171〉. 〈halsde-00288730〉
  • Veronique Letort, Paul Mahe, Paul-Henry Cournède, Philippe De Reffye, Brigitte Courtois. Quantitative Genetics and Functional–Structural Plant Growth Models: Simulation of Quantitative Trait Loci Detection for Model Parameters and Application to Potential Yield Optimization. Annals of Botany, Oxford University Press (OUP), 2008, 101 (8), pp.1243-1254. 〈http://aob.oxfordjournals.org/content/101/8/1243.abstract〉. 〈10.1093/aob/mcm197〉. 〈inria-00529529〉
  • Veronique Letort, Paul-Henry Cournède, Amélie Mathieu, Philippe De Reffye, Thiéry Constant. Parametric identification of a functional-structural tree growth model and application to beech trees (Fagus sylvatica). Functional Plant Biology, CSIRO Publishing, 2008, 35, pp.951-963. 〈http://www.publish.csiro.au/paper/FP08065.htm〉. 〈inria-00529461〉
  • Shuang-Hong Yang, Bao-Gang Hu, Paul-Henry Cournède. Structural Identifiability of Generalized Constraint Neural Network Models for Nonlinear Regression. Neurocomputing, Elsevier, 2008, 72 (1-3), pp.392-400. 〈10.1016/j.neucom.2007.12.013〉. 〈hal-00872379〉
  • Angélique Christophe, Veronique Letort, Irène Hummel, Paul-Henry Cournède, P. De Reffye, et al.. A model-based analysis of the dynamics of carbon balance at the whole-plant level in Arabidopsis thaliana. Functional Plant Biology, CSIRO Publishing, 2008, 35, pp.1147-1162. 〈10.1071/FP08099〉. 〈hal-00652522〉
  • M. Z. Kang, Paul-Henry Cournède, Philippe De Reffye, Daniel Auclair, Bao-Gang Hu. Analytical study of a stochastic plant growth model: application to the GreenLab model. Mathematics and Computers in Simulation, Elsevier, 2008, 78 (1), pp.57-78. 〈10.1016/j.matcom.2007.06.003〉. 〈halsde-00306691〉
  • Vincent Le Chevalier, Marc Jaeger, Xing Mei, Paul-Henry Cournède. Simulation and visualisation of functional landscape: effects of the water resource competition between plants. Journal of Computer Science and Technology, Iberoamerican Science & Technology Education Consortium, 2007, 22 (2), pp.835-845. 〈hal-00192729〉
  • Vincent Le Chevalier, Marc Jaeger, Xing Mei, Paul-Henry Cournède. Simulation and Visualisation of Functional Landscapes: Effects of the Water Resource Competition between Plants. JCST, Springer, 2007, 22 (6), pp.835-845. 〈inria-00547631〉
  • Bruno Koobus, Paul-Henry Cournède, Alain Dervieux. Positivity statements for a Mixed-Element-Volume scheme on fixed and moving grids. La revue européenne de mécanique numérique, 2006, 15 (7-8), pp.767-798. 〈hal-00372831〉
  • Amélie Rostand-Mathieu, Paul-Henry Cournède, Philippe Reffye. A dynamical model of plant growth with full retroaction between organogenesis and photosynthesis. Revue Africaine de la Recherche en Informatique et Mathématiques Appliquées, INRIA, 2006, 4, pp.101-107. 〈inria-00122478v2〉
  • Lin Wu, Philippe De Reffye, Bao-Gang Hu, François-Xavier Le Dimet, Paul-Henry Cournède. A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model. Revue Africaine de la Recherche en Informatique et Mathématiques Appliquées, INRIA, 2005, 3, pp.197-207. 〈hal-01261708〉

Communication dans un congrès45 documents

  • Irene Votsi, Paul-Henry Cournède. A data augmentation scheme embedding a sequential Monte Carlo method for Bayesian parameter inference in state space models. 48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France. 〈hal-01355334〉
  • Antonin Della Noce, Véronique Letort, Amandine Hansart, Charlotte Baey, Gautier Viaud, et al.. Modeling the inter-individual variability of single-stemmed plant development. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). 〈hal-01490367〉
  • Gautier Viaud, Yuting Chen, Benoît Bayol, Paul-Henry Cournède. A Comparison of a Generic MCMC-Based Algorithm for Bayesian Estimation in C++, R and Julia. Application to Plant Growth Modeling. ANSS, Apr 2015, Alexandria, United States. 2015. 〈hal-01250999〉
  • Yuting Chen, Samis Trevezas, Aman Gupta, Paul-Henry Cournède. Some sequential Monte Carlo techniques for Data Assimilation in a plant growth model. Applied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Spain. in press, 2013. 〈hal-00997736〉
  • Qiongli Wu, Paul-Henry Cournède. Assessment of Interactions in Complex Mechanistic Models using Global Sensitivity Analysis. International Conference "Interactions in Complex Systems", Jun 2013, Orléans, France. 2013. 〈hal-00826105〉
  • Qiongli Wu, Jessica Bertheloot, Paul-Henry Cournède. A comprehensive global sensitivity analysis for biological model diagnosis and parameterization: application to the NEMA model. Seventh International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. 2013. 〈hal-00826102〉
  • Qiongli Wu, Benoît Bayol, Fenni Kang, Jérémie Lecoeur, Paul-Henry Cournède. Sensitivity Analysis for Plant Models with Correlated Parameters: Application to the Characterization of Sun flower Genotypes. 7th International Conference on Sensitivity Analysis of Model Output, Jul 2013, Nice, France. 2013. 〈hal-00826104〉
  • Robert Beyer, Paul-Henry Cournède. Modelling Competition in Crop Populations via Reaction-­Diffusion Foliage Dynamics. With an Outlook on Tree Modelling. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.201-203, 2013. 〈hal-00829756〉
  • Qiongli Wu, Jessica Bertheloot, Paul-Henry Cournède. Global sensitivity analysis of the NEMA model for its parameterization and biological diagnosis.. 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland. 2013. 〈hal-01456018〉
  • Benoit Bayol, Yuting Chen, Paul-Henry Cournède. Towards an EDSL to enhance good modelling practice for non-linear stochastic discrete dynamical models Application to plant growth models. SIMULTECH 2013, Jul 2013, Iceland. pp.132-138, 2014, 〈10.5220/0004481101320138〉. 〈hal-01001669〉
  • Charlotte Baey, Samis Trevezas, Paul-Henry Cournède. A nonlinear mixed effects model to explain inter-individual variability in plant populations. 15th Applied Stocahstic Models and Data Analysis, Jun 2013, Barcelona, Spain. 2013. 〈hal-00826175〉
  • Yuting Chen, Samis Trevezas, Paul-Henry Cournède. Iterative convolution particle filtering for nonlinear parameter estimation and data assimilation with application to crop yield prediction. Society for Industrial and Applied Mathematics (SIAM): Control & its Applications 2013, Jul 2013, San Diego, United States. pp.CHEN, 2013. 〈hal-00826052〉
  • Fenni Kang, Veronique Letort, Hugo Magaldi, Paul-Henry Cournède, Jérémie Lecoeur. SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop. Kang Mengzhen, Yves Dumont, Yan Guo. Plant Growth Modeling, Simulation, Visualization and Applications (PMA), Oct 2012, Shanghai, China. IEEE Press, pp.148-151, 2012. 〈hal-00781183〉
  • Yuting Chen, Benoît Bayol, Cédric Loi, Samis Trevezas, Paul-Henry Cournède. Filtrage par noyaux de convolution itératif. Les 44 Journées de Statistique, May 2012, Bruxelles, Belgique. pp.CHEN, 2012. 〈hal-00776397〉
  • Yuting Chen, Paul-Henry Cournède. Assessment of Parameter Uncertainty in Plant Growth Model Identification. 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, China. CHEN, page 43, 2012. 〈hal-00776551〉
  • Charlotte Baey, Anne Didier, Li Song, Sébastien Lemaire, Fabienne Maupas, et al.. Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet. Mengzhen Kang, Yves Dumont, Yan Guo. Plant Growth Modeling, Simulation, Visualization and Applications - PMA12, Nov 2012, Shanghai, China. IEEE, pp.30-37, 2012. 〈hal-00776389v2〉
  • Cédric Loi, Paul-Henry Cournède, Samis Trevezas. Bayesian Estimation in Functional-Structural Plant Models with Stochastic Organogenesis. 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy. 2011. 〈hal-00653672〉
  • Xiujuan Wang, Amélie Mathieu, Paul-Henry Cournède, Jean Michel Allirand, Alexandra Jullien, et al.. Effects of pod position and its appearance time on pod and seed abortion in winter oilseed rape (Brassica napus L.). 13. International Rapeseed Congress, Jun 2011, Pargue, Czech Republic. Union of Oilseeds Growers and Processors, pp.154-157, 2011. 〈hal-01000458〉
  • Charlotte Baey, Paul-Henry Cournède. Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations.. 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy. 2011. 〈inria-00602419〉
  • Qiongli Wu, Paul-Henry Cournède. A methodology to study Complex Biophysical Systems with Global Sensitivity Analysis. Christophe Berenguer,Antoine Grall,Carlos Guedes Soares. ESREL2011, Sep 2011, Troyes, France. CRC press, 2011. 〈hal-00639549〉
  • Qiongli Wu, Paul-Henry Cournède. The use of Sensitivity Analysis for the design of Functional Structural Plant Models. Sixth international conference on sensitivity analysis of model output, Jul 2010, Milan, Italy. 2 (6), pp.7768-7769, 2010. 〈hal-00534046〉
  • Qiongli Wu, Paul-Henry Cournède. Sensitivity analysis of GreenLab model for maize. 3rd international symposium on Plant Growth and Applications (PMA09), Nov 2010, Beijing, China. 2009. 〈inria-00532950〉
  • Qiongli Wu, Jessica Bertheloot, Amélie Mathieu, Andrieu Bruno, Paul-Henry Cournède. Assessment of Non-Linearity in Functional-Structural Plant Models. FSPM 2010 - 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, California, United States. 2010. 〈hal-01192293v2〉
  • Cedric Loi, Paul-Henry Cournède, Jean Françon. A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0L-systems. Drmota, Michael and Gittenberger, Bernhard. 21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), 2010, Vienna, Austria. Discrete Mathematics and Theoretical Computer Science, DMTCS Proceedings vol. AM, 21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), pp.473-488, 2010, DMTCS Proceedings. 〈inria-00529137v2〉
  • Amélie Mathieu, Véronique Letort, Renaud Gosset, Jacques Gignoux, Paul-Henry Cournède. Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacks. Li, B.-G. and Jaeger, M. and Guo, Y. PMA09: The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, 2009, Beijing, China. IEEE Computer Society (Los Alamitos, California), 2009, Plant Growth Modeling, Simulation, Visualization and Applications (PMA09). 〈inria-00543136〉
  • Sébastien Lemaire, Fabienne Maupas, Paul-Henry Cournède, Jean-Michel Allirand, Bertrand Ney, et al.. Analysis of the density effects on the source-sink dynamics in Sugar-Beet growth. Li, B.-G. and Jaeger, M. and Guo, Y. PMA09: The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. IEEE Computer Society (Los Alamitos, California), 2009, Plant Growth Modeling, Simulation, Visualization and Applications. 〈inria-00543137〉
  • P. De Reffye, Sébastien Lemaire, Nitish Srivastava, Fabienne Maupas, Paul-Henry Cournède. Modeling Inter-Individual Variability in Sugar Beet Populations. Li, B.G. and Jaeger, M. and Guo, Y. PMA09, Nov 2009, Beijing, China. IEEE, 2009, 3rd international symposium on Plant Growth and Applications(PMA09). 〈inria-00537646〉
  • Zhongping Li, Vincent Le Chevalier, Paul-Henry Cournède. Towards a continuous approach of functional-structural plant growth. The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. pp.334-340, 2009, 〈10.1109/PMA.2009.69〉. 〈hal-00529351〉
  • Wang Xiujuan, Amélie Mathieu, Paul-Henry Cournède, Jean-Michel Allirand, Alexandra Jullien, et al.. Stochastic models in floral biology and its application to the study of oilseed rape (Brassica napus L.) fertility. Plant Growth Modeling, Simulation, Visualization and Applications (PMA), 2009 Third International Symposium, Nov 2009, Beijing, China. 2010. 〈inria-00529375〉
  • Paul-Henry Cournède, Thomas Guyard, Benoit Bayol, Sébastien Griffon, François De Coligny, et al.. A Forest Growth Simulator Based on Functional-Structural Modelling of Individual Trees. LI, B.-G. and JAEGER, M. and GUO, Y. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. pp.34-41, 2009, 〈http://doi.ieeecomputersociety.org/10.1109/PMA.2009.55〉. 〈10.1109/PMA.2009.55〉. 〈inria-00529096〉
  • Amélie Mathieu, Véronique Letort, Renaud Gosset, Jacques Gignoux, Paul-Henry Cournède. Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacks. PMA 2009 3rd International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. IEEE Computer Society, 454 p., 2010. 〈hal-01192315〉
  • Jessica Bertheloot, Paul-Henry Cournède, Bruno Andrieu. Nitrogen acquisition and utilization by crops: review of different approaches and proposition of a mechanistic modeling. PMA 2009 3rd International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. IEEE Computer Society, 454 p., 2010. 〈hal-01192311〉
  • Sébastien Lemaire, Fabienne Maupas, Paul-Henry Cournède, Jean Michel Allirand, Philippe Verchère de Reffye, et al.. Analysis of the density effects on the source-sink dynamics in Sugar-Beet growth. Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Pekin, China. IEEE Computer Society, 454 p., 2010. 〈hal-01192314〉
  • Cedric Loi, Paul-Henry Cournède, Jean Françon. Plants as Combinatorial Structures and Applications. The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Pékin, China. pp.319-326, 2009. 〈inria-00546283〉
  • Benoit Pallas, Cedric Loi, Angélique Christophe, Paul-Henry Cournède, Jérémie Lecoeur. A stochastic growth model of grapevine with full interaction between environment, trophic competition and plant development.. The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Pékin, China. pp.95-102, 2009. 〈inria-00546291〉
  • Véronique Letort, Paul-Henry Cournède, Philippe De Reffye. Impact of topology on plant functioning : a theoretical analysis based on the GreenLab model equations. Li Baoguo, Jaeger Marc, Guo Yan. Plant Growth Modeling, Simulation, Visualization and Applications - PMA09, Nov 2009, Beijing, China. IEEE Computer Society Press, 3, pp.341-348, 2010. 〈hal-00546801〉
  • Meng Zhen Kang, Paul-Henry Cournède, Amélie Mathieu, Véronique Letort, Rui Qi, et al.. A Functional-Structural Plant Model-Theory and Applications in Agronomy. International Symposium on Crop Modeling and Decision Support: ISCMDS 2008, Apr 2008, Nanjing, China. 2008. 〈inria-00380520〉
  • Cedric Loi, Paul Henry Cournède. Generating Functions of Stochastic L-Systems and Application to Models of Plant Development. Roesler, Uwe. Fifth Colloquium on Mathematics and Computer Science, 2008, Kiel, Germany. Discrete Mathematics and Theoretical Computer Science, DMTCS Proceedings vol. AI, Fifth Colloquium on Mathematics and Computer Science, pp.325-338, 2008, DMTCS Proceedings. 〈hal-01194661〉
  • Sébastien Lemaire, Fabienne Maupas, Paul-Henry Cournède, Philippe De Reffye. A morphogenetic crop model for sugar-beet (Beta vulgaris L.). ISCMDS, Apr 2008, Nanjing, China. 2008. 〈inria-00336415v3〉
  • Veronique Letort, Paul Mahe, Paul-Henry Cournède, P. De Reffye, Brigitte Courtois. Optimizing plant growth model parameters for genetic selection based on QTL mapping. Fourcaud Thierry, Zhang XiaoPeng. Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. IEEE Computer Society Press, pp.16-21, 2006. 〈hal-00829810〉
  • Veronique Letort, Paul-Henry Cournède, Jérémie Lecoeur, Irène Hummel, Philippe De Reffye, et al.. Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence: a preliminary model-based study. Fourcaud Thierry, Zhang XiaoPeng. PMA06, Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. IEEE Computer Society Press, pp.65-69, 2006. 〈hal-00576589〉
  • Hong Guo, Veronique Letort, Lingxia Hong, Thierry Fourcaud, Paul-Henry Cournède, et al.. Adaptation of the GreenLab model for analyzing sink-source relationships in Chinese Pine saplings. Fourcaud Thierry, Zhang XiaoPeng. PMA06, Plant growth modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China. IEEE Computer Society Press, II, pp.236-243, 2006. 〈hal-00576583〉
  • L. Wu, F.X. Le Dimet, B.G. Hu, Paul-Henry Cournède, Philippe De Reffye. A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model. 7éme Colloque Africain sur la Recherche en Informatique (CARI'04), 2005, Mammamet / Tunisia, 2005. 〈inria-00122491〉
  • M.Z. Kang, Paul-Henry Cournède, J. Le Roux, Philippe De Reffye, B.G. Hu. Theoretical Study and Numerical Simulation of a Stochastic Model for Plant Growth. 7th African Conference on Research in Computer Science, Nov 2004, Hammamet / Tunisia, 2004. 〈inria-00121499〉
  • Amelie Mathieu, Paul-Henry Cournède, Philippe De Reffye. The Influence of Photosynthesis on the Number of Metamers per Growth Unit in GreenLab Model. 4TH International Workshop on Functional-Structural Plant Models, Jun 2004, Montpellier, France. 2004. 〈hal-00124845〉

Poster4 documents

  • Estelle Kuhn, Charlotte Baey, Paul Henry Cournède. Testing variance components in nonlinear mixed effects models. Application to plant growth modelling. 31-th European Meeting of Statisticians -EMS, Jul 2017, Helsinki Finland. 2017. 〈hal-01607982〉
  • Estelle Kuhn, Charlotte Baey, Paul Henry Cournède. Testing variance components in nonlinear mixed effects models. Application to plant growth modelling. 49.Journées de Statistique. JDS 2017, May 2017, Avignon, France. 2017. 〈hal-01608080〉
  • Estelle Kuhn, Charlotte Baey, Paul Henry Cournède. Testing variance components in nonlinear mixed effects models. Application to plant growth modelling. 9. International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2016), Dec 2016, Seville, Spain. 2016. 〈hal-01607339〉
  • Benoit Bayol, Gerhard Buck-Sorlin, Faustino Chi, Evelyne Costes, Paul Henry Cournède, et al.. Multiscale Functional-Structural Plant Modelling at the Example of Apple Trees. International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, 〈10.1109/FSPMA.2016.7818281〉. 〈hal-01602793〉

Chapitre d'ouvrage4 documents

  • Fenni Kang, Thomas Galinier, Paul-Henry Cournède, Jérémie Lecoeur. Parameterization of plant growth models to characterize genotype by environment interactions: a methodology adapted to breeding programs. Halford, N. and Semenov, M. Aspects of Applied Biology 107: Systems Approaches to Crop Improvement, The Association of Applied Biologists, pp.27-35, 2011. 〈hal-00872388〉
  • Meng Zhen Kang, Paul-Henry Cournède, Amélie Mathieu, Veronique Letort, Rui Qi. A Functional-Structural Plant Model: Theories and its Applications in Agronomy. Cao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp.148-160, 2009, 978-3-642-01131-3. 〈10.1007/978-3-642-01132-0_16〉. 〈hal-00872390〉
  • Philippe De Reffye, E. Heuvelink, Daniel Barthélémy, Paul-Henry Cournède. Plant growth models. Jorgensen, S. E., Fath, B. D. Encyclopedia of Ecology, Elsevier, pp.2824-2838, 2008. 〈halsde-00341036〉
  • Philippe De Reffye, Daniel Barthélémy, Paul-Henry Cournède, Marc Jaeger. Modélisation et simulation de l'architecture et de la production végétales. Francis Hallé. Aux origines des plantes : des plantes anciennes à la botanique du XXIe siècle, Fayard, pp.184-227, 2008. 〈halsde-00341034〉

Autre publication1 document

  • Samis Trevezas, Sonia Malefaki, Paul-Henry Cournède. Simulation techniques for parameter estimation via a stochastic ECM algorithm with applications to plant growth modeling. preprint. 2013. 〈hal-00798695〉

Pré-publication, Document de travail2 documents

  • Zhongping Li, Paul-Henry Cournède, Jean-Claude Mailhol. Irrigation Optimization by Modeling of Plant-Soil Interaction. 2011. 〈hal-00606408〉
  • Cedric Loi, Paul-Henry Cournède, Jean Françon. A symbolic method to analyse patterns in plant structure whose organogenesis is driven by a multitype branching process. 2010. 〈inria-00546309〉

Rapport3 documents

  • Cédric Loi, Paul-Henry Cournède. Computing the moments of probability distributions for branching processes. [Research Report] RR-6728, INRIA. 2008, pp.23. 〈inria-00340055〉
  • Cédric Loi, Paul-Henry Cournède. A Markovian framework to formalize stochastic L-systems and application to models of plant development. [Research Report] RR-6830, INRIA. 2008, pp.24. 〈inria-00359515〉
  • Paul-Henry Cournède, Christophe Debiez, Alain Dervieux. A Positive MUSCL Scheme for Triangulations. RR-3465, INRIA. 1998. 〈inria-00073225〉

HDR1 document

  • Paul-Henry Cournède. Dynamic System of Plant Growth. Mathematics [math]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009. 〈tel-00377462v2〉