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Patrick Amar

46
Documents
Affiliations actuelles
  • 1050015
  • 1050003
  • 1061259
  • 1062146
  • 403623

Publications

Pandæsim: An Epidemic Spreading Stochastic Simulator

Patrick Amar
Biology, 2020, 9 (9), pp.299. ⟨10.3390/biology9090299⟩
Article dans une revue hal-02946466v1

Biomachines For Medical Diagnosis

Francisco Santos Schneider , Amar Patrick , Asma Bahri , Julien Espeut , Mellis Alali
Advanced Materials Letters, 2020, 11 (4), pp.1-5. ⟨10.5185/amlett.2020.041499⟩
Article dans une revue hal-03059916v1
Image document

Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices

Alexis Courbet , Patrick Amar , François Fages , Eric Renard , Franck Molina
Molecular Systems Biology, 2018, 14 (4), ⟨10.15252/msb.20177845⟩
Article dans une revue hal-01779791v1

Hypothesis: Local variations in the speed of individual DNA replication forks determine the phenotype of daughter cells

Vic Norris , François Képès , Patrick Amar , Ina Koch , Laurent Janniere
Medical Research Archives, 2017, 5 (12), ⟨10.18103/mra.v5i12.1598⟩
Article dans une revue hal-01672912v1

Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis

David Ellison , Andrew Mugler , Matthew D. Brennan , Sung Hoon Lee , Robert J. Huebner
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (6), pp.E679--E688. ⟨10.1073/pnas.1516503113⟩
Article dans une revue hal-01266690v1

Computing with Synthetic Protocells

Alexis Courbet , Franck Molina , Patrick Amar
Acta Biotheoretica, 2015, pp.15. ⟨10.1007/s10441-015-9258-8⟩
Article dans une revue hal-01153130v1

Novel insights regarding the sigmoidal pattern of resistance to neomycin conferred by the aphII gene, in Streptomyces lividans.

Nicolas Seghezzi , Marie-Joelle Virolle , Patrick Amar
AMB Express, 2013, 3 (1), pp.13. ⟨10.1186/2191-0855-3-13⟩
Article dans une revue hal-00794555v1

Sensor potency of the moonlighting enzyme-decorated cytoskeleton

Vic Norris , Patrick Amar , Guillaume Legent , Camille Ripoll , Michel Thellier
BMC Biochemistry, 2013, 14 (3), pp.1-10. ⟨10.1186/1471-2091-14-3⟩
Article dans une revue hal-00766058v1

Chromosome Replication in Escherichia coli: Life on the Scales

Vic Norris , Patrick Amar
Life (Chicago, Ill. : 1978), 2012, 2 (4), pp.286-312. ⟨10.3390/life2040286⟩
Article dans une revue hal-00758130v1

The Mimic Chain Reaction

Vic Norris , Alain R Thierry , Patrick Amar , Barry I Holland , Franck Molina
Journal of Molecular Microbiology and Biotechnology, 2012, 22 (5), pp.335-343. ⟨10.1159/000345328⟩
Article dans une revue hal-00761608v1

The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters.

Nicolas Seghezzi , Patrick Amar , Brian Koebmann , Peter R Jensen , Marie-Joëlle Virolle
Applied Microbiology and Biotechnology, 2011, 90 (2), pp.615-23. ⟨10.1007/s00253-010-3018-0⟩
Article dans une revue hal-00643741v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

Victor Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet
Theory in Biosciences, 2011
Article dans une revue hal-03469597v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

Vic Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet
Theorie in den Biowissenschaften / Theory in Biosciences, 2011, 130 (3), pp.211-228. ⟨10.1007/s12064-010-0118-4⟩
Article dans une revue hal-00643738v1
Image document

Automatic characterization of emergent phenomena in complex systems

Thomas Moncion , Patrick Amar , Guillaume Hutzler
Journal of Biological Physics and Chemistry, 2010, 10, pp.16--23
Article dans une revue hal-00644627v1

A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency.

Patrick Amar , Guillaume Legent , Michel Thellier , Camille Ripoll , Gilles Bernot
BMC Systems Biology, 2008, 2, pp.27. ⟨10.1186/1752-0509-2-27⟩
Article dans une revue hal-00643746v1

Steady-state kinetic behaviour of functioning-dependent structures

Michel Thellier , Guillaume Legent , Patrick Amar , Vic Norris , Camille Ripoll
FEBS Journal, 2006, 273 (18), pp.4287-4299. ⟨10.1111/j.1742-4658.2006.05425.x⟩
Article dans une revue hal-02972221v1
Image document

Modelling of complex biological systems in the context of genomics: an account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005

Alain Thierry , François Képès , Patrick Amar , Georgia Barlovatz-Meimon , Gilles Bernot
Journal of Biological Physics and Chemistry, 2006, 6, pp.103-107
Article dans une revue hal-00830064v1

HSIM: a simulation programme to study large assemblies of proteins

Patrick Amar , Gilles Bernot , Victor Norris
Journal of Biological Physics and Chemistry, 2004, 4, pp.124--130
Article dans une revue hal-01276581v1

questions for cell cyclists

Victor Norris , Patrick Amar , Gilles Bernot , Anthony Delaune , Cedric Dérue
Journal of Biological Physics and Chemistry, 2004
Article dans une revue hal-03469523v1

Modelling and simulation of biological processes in the context of genomics

Victor Norris , Patrick Amar , Gilles Bernot , Jean-Louis Giavitto , Christophe Godin
Journal of Biological Physics and Chemistry, 2003, 3, pp.106-110
Article dans une revue hal-00827462v1

Hyperstructures, genome analysis and I-Cells

Patrick Amar , Pascal Ballet , Georgia Barlovatz-Meimon , Arndt Benecke , Gilles Bernot
Acta Biotheoretica, 2002, 50 (4), pp.357-373. ⟨10.1023/A:1022629004589⟩
Article dans une revue hal-00827467v1

Bio-calculateur booléen à base de réseaux métaboliques intégré dans une vésicule artificielle: temporisation par oscillateur enzymatique

Patrick Amar
Séminaire de la Société Francophone de Biologie Théorique, Jun 2018, Saint Flour, France
Communication dans un congrès hal-01817607v1

Extracting logic gates from a metabolic network

Marc Bouffard , Franck Molina , Patrick Amar
advances in Systems and Synthetic Biology, Mar 2015, Strasbourg, France. pp.13
Communication dans un congrès hal-01137905v1

Systèmes oscillants chaotiques en biologie

Patrick Amar
Ecole de Printemps 2014 de la Société Francophone de Biologie Théorique, Société Francophone de Biologie Théorique, May 2014, St Flour, France
Communication dans un congrès hal-01087815v1

Parallel biological in silico simulation

Patrick Amar , Muriel Baillieul , Dominique Barth , Bertrand Lecun , Franck Quessette
29th Intenational Symposium on Computer and Information Sciences, Oct 2014, Krakow, Poland. pp.387-394, ⟨10.1007/978-3-319-09465-6_40⟩
Communication dans un congrès hal-01087811v1

Comparative study of some methods for simulation of biochemical reactions

Patrick Amar
Ecole de Printemps 2012 de la Société Francophone de Biologie Théorique, Jun 2012, Saint Flour, France
Communication dans un congrès hal-00763571v1

HSIM: an hybrid stochastic simulation system for systems biology

Patrick Amar , Loïc Paulevé
The Third International Workshop on Static Analysis and Systems Biology (SASB 2012), Sep 2012, Deauville, France. pp.3 -- 21, ⟨10.1016/j.entcs.2015.04.016⟩
Communication dans un congrès hal-00758168v1
Image document

From bioputing to bactoputing: computing with bacteria

Victor Norris , Abdallah Zemirline , Patrick Amar , Pascal Ballet , Eshel Ben Jacob
Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, Apr 2008, Paris, France. pp.123-150
Communication dans un congrès hal-00340470v1

Detection of emergent phenomena in multi-agent systems

Thomas Moncion , Guillaume Hutzler , Patrick Amar
Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics, 2007, Evry, France
Communication dans un congrès hal-00340469v1

Hybolites: novel therapeutical tools based on stochastic automata

Victor Norris , Patrick Amar , Michel Thellier , Guillaume Legent , Armelle Cabin-Flaman
modelling complex biological systems, 2007, Evry, France
Communication dans un congrès hal-03469544v1

Verification of Biochemical Agent-Based Models Using Petri Nets

Thomas Moncion , Guillaume Hutzler , Patrick Amar
International Symposium on Agent Based Modeling and Simulation (ABModSim 2006), 2006, Vianna, Austria. pp.695--700
Communication dans un congrès hal-00340492v1

Validation d'une simulation à base d'agents par l'utilisation d'un réseau de Petri

Thomas Moncion , Guillaume Hutzler , Patrick Amar
Systèmes multi-agents vers la conception de systèmes artificiels socio-mimétiques (JFSMA 2005), 2005, France. pp.187--190
Communication dans un congrès hal-00340462v1

Validation of an Agent Based System Using Petri Nets

Thomas Moncion , Guillaume Hutzler , Patrick Amar
Proceedings of the fourth international joint conference on Autonomous agents and multiagent systems, 2005, Netherlands. pp.1365--1366, ⟨10.1145/1082473.1082775⟩
Communication dans un congrès hal-00340493v1

Cellular automata, reaction-diffusion and multiagents systems for artificial cell modelling

Abdallah Zemirline , Pascal Ballet , Lionel Marcé , Patrick Amar , Gilles Bernot
Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.257-280
Communication dans un congrès hal-00827465v1

Proceedings of The 2012 Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics

Patrick Amar , Francois Kepes , Victor Norris
P. Amar, F. Kepes, V. Norris. EDP Sciences, pp.159, 2012, 978-2-7598-0753-6
Ouvrages hal-00766014v1

Proceedings of the Sophia-Antipolis Spring School on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Kepes , Victor Norris
EDP Sciences, 2011, 978-2-7598-0644-7
Ouvrages hal-01138866v1

Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Victor Norris
EDP Sciences, 2010, 978-2-7598-0445-7
Ouvrages hal-01276496v1

Proceedings of the Nice 2009 spring school on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Victor Norris , Gilles Bernot
EDP Sciences, pp.154, 2009, 978-2-7598-0437-5
Ouvrages hal-01276502v1

Proceedings of the Lille 2008 spring school on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Victor Norris , Bernard Vandenbunder
EDP Sciences, pp.197, 2008, 978-2-7598-0075-9
Ouvrages hal-01276508v1

Proceedings of the Evry 2007 spring school on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Victor Norris , Gilles Bernot
EDP Sciences, pp.134, 2007, 978-2-7598-0019-3
Ouvrages hal-01276522v1

Proceedings of the Bordeaux spring school on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Victor Norris , Marie M. Beurton-Aimar , Jean-Pierre Mazat
EDP Sciences, pp.111, 2006, 978-2-7598-0014-8
Ouvrages hal-01276530v1

Proceedings of the Montpellier spring school on Modelling Complex Biological Systems in the context of genomics

Patrick Amar , François Képès , Franck Molina , Victor Norris
EDP Sciences, pp.176, 2005, 2-86883-947-9
Ouvrages hal-01276539v1

Proceedings of the EVRY spring school on Modelling and simulation of biological processes in the context of genomics

Patrick Amar , Jean-Paul Comet , François Képès , Victor Norris
Platypus Press, pp.210, 2004, 2-84704-0374
Ouvrages hal-01276601v1

Proceedings of the DIEPPE spring school on Modelling and simulation of biological processes in the context of genomics

Patrick Amar , François Képès , Victor Norris , Philippe Tracqui
Platypus Press, pp.272, 2003, 2-84704-036-6
Ouvrages hal-01276604v1

Proceedings of the AUTRANS spring school on Modelling and simulation of biological processes in the context of genomics

Patrick Amar , François Képès , Victor Norris , Philippe Tracqui
, pp.294, 2002
Ouvrages hal-01276617v1