Nombre de documents

41


Article dans une revue15 documents

  • Alexis Courbet, Franck Molina, Patrick Amar. Computing with Synthetic Protocells. Acta Biotheoretica, Springer Verlag, 2015, pp.15. <10.1007/s10441-015-9258-8>. <hal-01153130>
  • Nicolas Seghezzi, Marie-Joelle Virolle, Patrick Amar. Novel insights regarding the sigmoidal pattern of resistance to neomycin conferred by the aphII gene, in Streptomyces lividans.. AMB Express, SpringerOpen, 2013, 3 (1), pp.13. <10.1186/2191-0855-3-13>. <hal-00788558>
  • Nicolas Seghezzi, Marie-Joelle Virolle, Patrick Amar. Novel insights regarding the sigmoidal pattern of resistance to neomycin conferred by the aphII gene, in Streptomyces lividans.. AMB Express, SpringerOpen, 2013, 3 (1), pp.13. <10.1186/2191-0855-3-13>. <hal-00794555>
  • Vic Norris, Patrick Amar, Guillaume Legent, Camille Ripoll, Michel Thellier, et al.. Sensor potency of the moonlighting enzyme-decorated cytoskeleton. BMC Biochemistry, BioMed Central, 2013, 14 (3), <10.1186/1471-2091-14-3>. <hal-00766058>
  • Vic Norris, Alain R Thierry, Patrick Amar, Barry I Holland, Franck Molina. The Mimic Chain Reaction. Journal of Molecular Microbiology and Biotechnology, Karger, 2012, 22 (5), pp.335-343. <10.1159/000345328>. <hal-00761608>
  • Vic Norris, Patrick Amar. Chromosome Replication in Escherichia coli: Life on the Scales. Life (Chicago, Ill. : 1978), Time Inc., 2012, 2 (4), pp.286-312. <10.3390/life2040286>. <hal-00758130>
  • Nicolas Seghezzi, Patrick Amar, Brian Koebmann, Peter R Jensen, Marie-Joëlle Virolle. The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters.. Applied Microbiology and Biotechnology, Springer Verlag, 2011, 90 (2), pp.615-23. <10.1007/s00253-010-3018-0>. <hal-00591940>
  • Nicolas Seghezzi, Patrick Amar, Brian Koebmann, Peter R Jensen, Marie-Joëlle Virolle. The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters.. Applied Microbiology and Biotechnology, Springer Verlag, 2011, 90 (2), pp.615-23. <10.1007/s00253-010-3018-0>. <hal-00643741>
  • Thomas Moncion, Patrick Amar, Guillaume Hutzler. Automatic characterization of emergent phenomena in complex systems. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2010, 10, pp.16--23. <hal-00644627>
  • Patrick Amar, Guillaume Legent, Michel Thellier, Camille Ripoll, Gilles Bernot, et al.. A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency.. BMC Systems Biology, BioMed Central, 2008, 2, pp.27. <10.1186/1752-0509-2-27>. <hal-00643746>
  • Alain R. Thierry, François Képès, Patrick Amar, Georgia Barlovatz-Meimon, Gilles Bernot, et al.. Modelling of biological complex systems in the context of genomics. An account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2006, 6, pp.103--107. <hal-00339610>
  • Alain Thierry, François Képès, Patrick Amar, Georgia Barlovatz-Meimon, Gilles Bernot, et al.. Modelling of complex biological systems in the context of genomics: an account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2006, 6, pp.103-107. <hal-00830064>
  • Patrick Amar, Gilles Bernot, Victor Norris. HSIM: a simulation programme to study large assemblies of proteins. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2004, 4, pp.124--130. <hal-01276581>
  • Victor Norris, Patrick Amar, Gilles Bernot, Jean-Louis Giavitto, Christophe Godin, et al.. Modelling and simulation of biological processes in the context of genomics. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2003, 3, pp.106-110. <hal-00827462>
  • Patrick Amar, Pascal Ballet, Georgia Barlovatz-Meimon, Arndt Benecke, Gilles Bernot, et al.. Hyperstructures, genome analysis and I-Cells. Acta Biotheoretica, Springer Verlag, 2002, 50 (4), pp.357-373. <10.1023/A:1022629004589>. <hal-00827467>

Communication dans un congrès11 documents

  • Marc Bouffard, Franck Molina, Patrick Amar. Extracting logic gates from a metabolic network. advances in Systems and Synthetic Biology, Mar 2015, Strasbourg, France. pp.13, 2015, <epigenomique.free.fr>. <hal-01137905>
  • Patrick Amar. Systèmes oscillants chaotiques en biologie. Ecole de Printemps 2014 de la Société Francophone de Biologie Théorique, May 2014, St Flour, France. 2014, <http://sfbt-2014.imag.fr/>. <hal-01087815>
  • Patrick Amar, Muriel Baillieul, Dominique Barth, Bertrand Lecun, Franck Quessette, et al.. Parallel biological in silico simulation. 29th Intenational Symposium on Computer and Information Sciences, Oct 2014, Krakow, Poland. Information Sciences and Systems, pp.387-394, 2014, <https://projekty.iitis.pl/iscis>. <10.1007/978-3-319-09465-6_40>. <hal-01087811>
  • Patrick Amar. Comparative study of some methods for simulation of biochemical reactions. Ecole de Printemps 2012 de la Société Francophone de Biologie Théorique, Jun 2012, Saint Flour, France. 2012. <hal-00763571>
  • Patrick Amar, Loïc Paulevé. HSIM: an hybrid stochastic simulation system for systems biology. The Third International Workshop on Static Analysis and Systems Biology (SASB 2012), Sep 2012, Deauville, France. Electronic Notes in Theoretical Computer Science, 313, pp.3 -- 21, 2012, <10.1016/j.entcs.2015.04.016>. <hal-00758168>
  • Victor Norris, Abdallah Zemirline, Patrick Amar, Pascal Ballet, Eshel Ben Jacob, et al.. From bioputing to bactoputing: computing with bacteria. Proceedings of the Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, 2008, France. <hal-00340470>
  • Thomas Moncion, Guillaume Hutzler, Patrick Amar. Detection of emergent phenomena in multi-agent systems. Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics, 2007, Evry, France. <hal-00340469>
  • Thomas Moncion, Guillaume Hutzler, Patrick Amar. Verification of Biochemical Agent-Based Models Using Petri Nets. International Symposium on Agent Based Modeling and Simulation (ABModSim 2006), 2006, Vianna, Austria. pp.695--700, 2006. <hal-00340492>
  • Thomas Moncion, Guillaume Hutzler, Patrick Amar. Validation of an Agent Based System Using Petri Nets. Proceedings of the fourth international joint conference on Autonomous agents and multiagent systems, 2005, Netherlands. pp.1365--1366, 2005, <10.1145/1082473.1082775>. <hal-00340493>
  • Thomas Moncion, Guillaume Hutzler, Patrick Amar. Validation d'une simulation à base d'agents par l'utilisation d'un réseau de Petri. Systèmes multi-agents vers la conception de systèmes artificiels socio-mimétiques (JFSMA 2005), 2005, France. pp.187--190, 2005. <hal-00340462>
  • Abdallah Zemirline, Pascal Ballet, Lionel Marcé, Patrick Amar, Gilles Bernot, et al.. Cellular automata, reaction-diffusion and multiagents systems for artificial cell modelling. Amar, Patrick and Képès, François and Norris, Victor and Tracqui, Philippe. Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.257-280, 2002. <hal-00827465>

Direction d'ouvrage, Proceedings14 documents

  • Patrick Amar, Francois Kepes, Vic Norris. advances in Systems and Synthetic Biology. Patrick Amar, François Képès, Vic Norris. France. EDP Sciences, pp.191, 2015, avances in Systems and Synthetic Biology, 978-2-7598-1764-1. <epigenomique.free.fr>. <hal-01137893>
  • Patrick Amar, François Képès, Vic Norris. avances in Systems and Synthetic Biology. Patrick Amar; François Képès; Vic Norris. France. EDP Sciences, pp.173, 2014, avances in Systems and Synthetic Biology, 978-2-7598-1201-1. <epigenomique.free.fr>. <hal-01087794>
  • Patrick Amar, François Képès, Vic Norris. avances in Systems and Synthetic Biology. Patrick Amar and François Képès andVic Norris. France. EDP Sciences, pp.171, 2013, avances in Systems and Synthetic Biology, 978-2-7598-0974-5. <hal-00930249>
  • Patrick Amar, Francois Kepes, Victor Norris. Proceedings of The 2012 Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. P. Amar, F. Kepes, V. Norris. EDP Sciences, pp.159, 2012, 978-2-7598-0753-6. <hal-00766014>
  • Patrick Amar, François Kepes, Victor Norris. Proceedings of the Sophia-Antipolis Spring School on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, 2011, 978-2-7598-0644-7. <epigenomique.free.fr>. <hal-01138866>
  • Patrick Amar, François Képès, Victor Norris. Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, 2010, 978-2-7598-0445-7. <epigenomique.free.fr>. <hal-01276496>
  • Patrick Amar, François Képès, Victor Norris, Gilles Bernot. Proceedings of the Nice 2009 spring school on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, pp.154, 2009, 978-2-7598-0437-5. <epigenomique.free.fr>. <hal-01276502>
  • Patrick Amar, François Képès, Victor Norris, Bernard Vandenbunder. Proceedings of the Lille 2008 spring school on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, pp.197, 2008, 978-2-7598-0075-9. <epigenomique.free.fr>. <hal-01276508>
  • Patrick Amar, François Képès, Victor Norris, Gilles Bernot. Proceedings of the Evry 2007 spring school on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, pp.134, 2007, 978-2-7598-0019-3. <epigenomique.free.fr>. <hal-01276522>
  • Patrick Amar, François Képès, Victor Norris, Marie Beurton-Aimar, Jean-Pierre Mazat. Proceedings of the Bordeaux spring school on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, pp.111, 2006, 978-2-7598-0014-8. <epigenomique.free.fr>. <hal-01276530>
  • Patrick Amar, François Képès, Franck Molina, Victor Norris. Proceedings of the Montpellier spring school on Modelling Complex Biological Systems in the context of genomics. France. EDP Sciences, pp.176, 2005, 2-86883-947-9. <epigenomique.free.fr>. <hal-01276539>
  • Patrick Amar, Jean-Paul Comet, François Képès, Victor Norris. Proceedings of the EVRY spring school on Modelling and simulation of biological processes in the context of genomics. France. Platypus Press, pp.210, 2004, 2-84704-0374. <epigenomique.free.fr>. <hal-01276601>
  • Patrick Amar, François Képès, Victor Norris, Philippe Tracqui. Proceedings of the DIEPPE spring school on Modelling and simulation of biological processes in the context of genomics. France. Platypus Press, pp.272, 2003, 2-84704-036-6. <epigenomique.free.fr>. <hal-01276604>
  • Patrick Amar, François Képès, Victor Norris, Philippe Tracqui. Proceedings of the AUTRANS spring school on Modelling and simulation of biological processes in the context of genomics. France. pp.294, 2002, <epigenomique.free.fr>. <hal-01276617>

HDR1 document

  • Patrick Amar. Contributions à l'étude de la dynamique des systèmes biologiques et aux systèmes de calcul en biologie synthétique. Bio-informatique [q-bio.QM]. Université Paris Sud - Paris XI, 2013. <tel-00929785>