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Deciphering functional annotation of multiple gene sets with MOTVIS
Aarón Ayllón-Benítez
,
Fleur Mougin
,
Manuel Quesada Martinez
,
Jesualdo Tomás Fernández Breis
,
Romain Bourqui
,
et al.
Jornées ouvertes de biologie informatique et matematiques, Jul 2018, Marseille, France
Poster de conférence
hal-02401858v1
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An introduction to metabolic networks and their structural analysis.
Vincent Lacroix
,
Ludovic Cottret
,
Patricia Thebault
,
Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Article dans une revue
hal-00355497v1
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Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode
Florence Tardy
,
Eric Baranowski
,
Laurent-Xavier Nouvel
,
Virginie Mick
,
Lucia Manso-Silvan
,
et al.
Article dans une revue
hal-00939842v1
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MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes
Aurélien Barré
,
Claire Lemaitre
,
Patricia Thebault
,
Antoine de Daruvar
,
Alain Blanchard
,
et al.
Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy
Communication dans un congrès
hal-00649151v1
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The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP.
Mh Renalier
,
N. Joseph
,
Christine Gaspin
,
Patricia Thebault
,
A. Mougin
RNA, 2005, 22 (17), pp.1051-63
Article dans une revue
hal-00355513v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
,
et al.
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Communication dans un congrès
hal-00742176v1
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iRNA: Integrative pipeline for genome-wide detection of sRNA targets
Amine Ghozlane
,
Jonathan Dubois
,
Isabelle Dutour
,
Romain Bourqui
,
Marc Breton
,
et al.
"Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France
Communication dans un congrès
hal-00695794v1
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CRISPR/Cas9 : From natural systems towards tools for genome engineering in Mollicutes
Thomas Ipoutcha
,
Iason Tsarmpopoulos
,
Geraldine Gourgues
,
Patricia Thébault
,
Alain Blanchard
,
et al.
BioSynSys/MaxSynBio/SynBio Symposium, Nov 2019, Bordeaux, France. 2019
Poster de conférence
hal-02737884v1
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Deciphering gene sets annotations with ontology based visualization
Aarón Ayllón-Benítez
,
Fleur Mougin
,
Jesualdo Tomás Fernández-Breis
,
Manuel Quesada Martinez
,
Patricia Thebault
,
et al.
21 st International conference information visualisation, Jul 2017, London, United Kingdom
Communication dans un congrès
hal-01524572v1
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Combining constraint processing and pattern matching to describe and locate structured motifs in genomic sequences.
Patricia Thebault
,
Simon de Givry
,
Thomas Schiex
,
Christine Gaspin
Fifth IJCAI-05 Workshop on Modelling and Solving Problems with Constraints, Edindurgh, Scotland, 2005., 2005, Edimbourg, United Kingdom. 8p
Communication dans un congrès
hal-00362194v1
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A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships
Claire Lemaitre
,
Aurélien Barré
,
Christine Citti
,
Florence Tardy
,
François Thiaucourt
,
et al.
Article dans une revue
hal-00784414v1
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Towards the development of a new genetic tool based on Mycoplasma gallisepticum natural CRISPR/Cas9 system
Iason Tsarmpopoulos
,
Thomas Ipoutcha
,
Géraldine Gourgues
,
Patricia Thébault
,
Alain Blanchard
,
et al.
European Mycoplasma Conference, Mar 2019, London, United Kingdom
Communication dans un congrès
hal-02788982v1
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats
Virginie Dupuy
,
Pascal Sirand-Pugnet
,
Eric Baranowski
,
Aurélien Barré
,
Marc Breton
,
et al.
Article dans une revue
hal-00907450v1
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GSAn: an alternative to enrichment analysis for annotating gene sets
Aarón Ayllón-Benítez
,
Romain Bourqui
,
Patricia Thebault
,
Fleur Mougin
Article dans une revue
hal-02509842v1
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HDR Composition du jury Alain DeniseProfesseur LRI, ParisRapporteur Claudine MédigueDirecteur de recherche CNRS, UMR8030 GenoscopeRapporteur Mohamed ElatiMaitre de conférences, ISSB, ParisRapporteur Christine GaspinDirectrice de recherche, INRA ToulouseExaminateur Jean Christophe TaveauProfesseur Université, BordeauxExaminateur Rodolphe ThiébautPUPH, INSERM, CHU de Bordeaux Examinateur Guillaume BlinProfesseur Université de BordeauxExaminateur
Patricia Thebault
Bio-Informatique, Biologie Systémique [q-bio.QM]. Ecole doctorale EDMI (ED Mathématiques et Informatique) Université de Bordeaux, 2017
HDR
tel-02373438v1
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A visualization approach to analyse bacterial sRNA-mediated regulatory networks
Jonathan Dubois
,
Amine Ghozlane
,
Patricia Thébault
,
Isabelle Dutour
,
Romain Bourqui
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. pp.Poster
Communication dans un congrès
hal-00838731v1
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Visualization of sRNA-mRNA Interaction Predictions
Joris Sansen
,
Patricia Thebault
,
Isabelle Dutour
,
Romain Bourqui
20th International Conference Information Visualisation (IVS 2016), Jul 2016, Lisbonne, Portugal. pp.342-347, ⟨10.1109/IV.2016.14⟩
Communication dans un congrès
hal-01559083v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
,
et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Communication dans un congrès
hal-00838725v1
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Genome-wide detection of sRNA targets with rNAV
Jonathan Dubois
,
Amine Ghozlane
,
Patricia Thebault
,
Isabelle Dutour
,
Romain Bourqui
Symposium on Biological Data Visualization, Oct 2013, Atlanta, United States. pp.81 - 88
Communication dans un congrès
hal-00935443v1
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Prédire et identifier le protéome de surface de bactéries pathogènes minimalistes : une étape clé dans la compréhension des interactions hôtes-mollicutes
Pascal P. Sirand-Pugnet
,
Laure Beven
,
Colette Saillard
,
Patricia Thébault
,
Marie-Pierre Dubrana
,
et al.
AgroBI 2008, Dec 2008, Bordeaux, France
Communication dans un congrès
hal-02758038v1
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Genome evolution and host specificity shape the surface proteome of mollicutes
Laure Beven
,
Christine Citti
,
Pascal P. Sirand-Pugnet
,
Marie-Pierre Dubrana
,
Patricia Thébault
,
et al.
Journées des microbiologistes de l'INRA 2010, May 2010, Poitiers, France
Communication dans un congrès
hal-02753432v1
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rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining
Romain Bourqui
,
Isabelle Dutour
,
Jonathan Dubois
,
William Benchimol
,
Patricia Thebault
Article dans une revue
hal-01521081v1
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Visualizing RNA Secondary Structure Base Pair Binding Probabilities using Nested Concave Hulls
Joris Sansen
,
Romain Bourqui
,
Patricia Thebault
,
Julien Allali
,
David Auber
5th Symposium on Biological Data Visualization, Jul 2015, Dublin, Ireland
Poster de conférence
hal-01664524v1
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Evolutionary history of contagious bovine pleuropneumonia using Next generation sequencing of Mycoplasma mycoides subsp. mycoides “small colony
Virginie Dupuy
,
Lucía Manso-Silván
,
Valérie Barbe
,
Patricia Thébault
,
Emilie Dordet Frisoni
,
et al.
IOM 2014 - 20. Congress of the International Organization for Mycoplasmology, Jun 2014, Blumenau, Brazil
Communication dans un congrès
hal-02797899v1
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Molligen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes
Aurélien Barré
,
Claire Lemaitre
,
Patricia Thébault
,
Antoine de Daruvar
,
Alain A. Blanchard
,
et al.
18. Congress of the International Organization for Mycoplasmology, Jul 2010, Chianciano Terme, Italy
Communication dans un congrès
hal-02756212v1
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Searching RNA motifs and their intermolecular contacts with constraint networks.
Patricia Thebault
,
Simon de Givry
,
Thomas Schiex
,
Christine Gaspin
Article dans une revue
hal-00355512v1
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A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets
Aarón Ayllón-Benítez
,
Fleur Mougin
,
Julien Allali
,
Rodolphe Thiébaut
,
Patricia Thebault
Article dans une revue
hal-01938961v1
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Identification d'ARN non codants
Christine Gaspin
,
Patricia Thebault
Biofutur, 2005, 251, pp.33-36
Article dans une revue
hal-00362186v1
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GSAn : An alternative to gene set enrichment analysis
Aarón Ayllón-Benítez
,
Patricia Thébault
,
Fleur Mougin
Journées Ouvertes de Biologie Informatique et Matématiques, Jul 2019, Nantes, France
Poster de conférence
hal-02401873v1
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Visualizing omics and clinical data: which challenges for dealing with their variety?
Fleur Mougin
,
David Auber
,
Romain Bourqui
,
Gayo Diallo
,
Isabelle Dutour
,
et al.
Article dans une revue
hal-03160796v2
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