Nombre de documents

24

CV de Patricia Thebault


Thèse1 document

  • Patricia Thebault. Formalisme CSP (Constraint Satisfaction Problem) et localisation de motifs structurés dans les textes génomiques. domain_other. Université Paul Sabatier - Toulouse III, 2004. Français. <tel-00011452>

Article dans une revue12 documents

  • Patricia Thebault, Romain Bourqui, Benchimol William, Christine Gaspin, Pascal Sirand-Pugnet, et al.. Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.. Briefings in Bioinformatics, Oxford University Press (OUP), 2014, pp.1-11. <10.1093/bib/bbu045>. <hal-01090907>
  • Virginie Dupuy, Pascal Sirand-Pugnet, Eric Baranowski, Aurélien Barré, Marc Breton, et al.. Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00354-13. <10.1128/genomeA.00354-13>. <hal-00907450>
  • Lucía Manso-Silván, Florence Tardy, Eric Baranowski, Aurélien Barré, Alain Blanchard, et al.. Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00348-13. <10.1128/genomeA.00348-13>. <hal-00907454>
  • Emilie Dordet-Frisoni, Eric Baranowski, Aurélien Barré, Alain Blanchard, Marc Breton, et al.. Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae. Genome Announcements, American Society for Microbiology, 2013, 1 (3), epub ahead of print. <10.1128/genomeA.00280-13>. <hal-00907449>
  • Virginie Dupuy, Lucía Manso-Silván, Valérie Barbe, Patricia Thebault, Emilie Dordet-Frisoni, et al.. Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".. PLoS ONE, Public Library of Science, 2012, 7 (10), pp.e46821. <10.1371/journal.pone.0046821>. <hal-00744892>
  • Florence Tardy, Eric Baranowski, Xavier Nouvel, Virginie Mick, Lucia Manso-Silvan, et al.. Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (13), pp.4659-4668. <hal-00939842>
  • Amine Ghozlane, Frédéric Bringaud, Hayssam Soueidan, Isabelle Dutour, Fabien Jourdan, et al.. Flux analysis of the Trypanosoma brucei glycolysis based on a multi-objective criteria bioinformatic approach, Advances in Bioinfromatics, 2012, in press. International conference with published acts. Advances in Bioinformatics, Hindawi Publishing Corporation, 2012, 2012, 16 p., Article ID 159423. <10.1155/2012/159423>. <hal-00723179>
  • Claire Lemaitre, Aurélien Barré, Christine Citti, Florence Tardy, François Thiaucourt, et al.. A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships. BMC Bioinformatics, BioMed Central, 2011, 12 (1), pp.457. <10.1186/1471-2105-12-457>. <hal-00784414>
  • Vincent Lacroix, Ludovic Cottret, Patricia Thebault, Marie-France Sagot. An introduction to metabolic networks and their structural analysis.. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2008, 5 (4), pp.594-617. <10.1109/TCBB.2008.79>. <hal-00355497>
  • Patricia Thebault, Simon De Givry, Thomas Schiex, Christine Gaspin. Searching RNA motifs and their intermolecular contacts with constraint networks.. Bioinformatics, Oxford University Press (OUP), 2006, 22 (17), pp.2074-80. <10.1093/bioinformatics/btl354>. <hal-00355512>
  • Mh Renalier, N. Joseph, Christine Gaspin, Patricia Thebault, A. Mougin. The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP.. RNA, Cold Spring Harbor Laboratory Press, 2005, 22 (17), pp.1051-63. <hal-00355513>
  • Christine Gaspin, Patricia Thebault. Identification d'ARN non codants. Biofutur, Elsevier - Cachan : Lavoisier, 2005, 251, pp.33-36. <hal-00362186>

Communication dans un congrès11 documents

  • Jonathan Dubois, Amine Ghozlane, Patricia Thebault, Isabelle Dutour, Romain Bourqui. Genome-wide detection of sRNA targets with rNAV. Symposium on Biological Data Visualization, Oct 2013, Atlanta, United States. pp.81 - 88, 2013. <hal-00935443>
  • Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, et al.. Visualization of time-series data in the context of metabolic networks with Systrip Software. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. 2013. <hal-00838725>
  • Jonathan Dubois, Amine Ghozlane, Patricia Thébault, Isabelle Dutour, Romain Bourqui. A visualization approach to analyse bacterial sRNA-mediated regulatory networks. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. pp.Poster, 2013. <hal-00838731>
  • Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, et al.. Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks. 16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204, 2012. <hal-00742176>
  • Patricia Thebault. A multi-objective heuristic integrating biological data for flux analysis in metabolic networks. Open Source Software for Systems, Pathways, Interactions and Networks (SPIN-OSS) retreat being held at the Wellcome Trust Genome Campus, EBI, Nov 2012, Hinxton, United Kingdom. <hal-00758101>
  • Amine Ghozlane, Jonathan Dubois, Isabelle Dutour, Romain Bourqui, Marc Breton, et al.. iRNA: Integrative pipeline for genome-wide detection of sRNA targets. "Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France. <hal-00695794>
  • Aurélien Barré, Claire Lemaitre, Patricia Thebault, Antoine De Daruvar, Alain Blanchard, et al.. MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes. Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy. <hal-00649151>
  • Laure Beven, Christine Citti, Pascal Sirand-Pugnet, Dubrana Marie-Pierre, Patricia Thebault, et al.. Shaping the surface proteome of minimal bacteria. Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010, 2010, France. <hal-00648772>
  • Amine Ghozlane, Frédéric Bringaud, Fabien Jourdan, Patricia Thebault. Metaboflux : a method to analyze flux distribution in metabolic networks. Workshop Metabolomics2010, AmsterdamRAI, the Netherlands, 2010, Amsterdam, Netherlands. <hal-00648759>
  • Christine Gaspin, Simon De Givry, Thomas Schiex, Patricia Thebault, Matthias Zytnicki. A new local consistency for weighted CSP applied to ncRNA detection.. Workshop on Constraint Based Methods for Bioinformatics October 5, 2005, Sitges (Spain), May 2005, Spain. <hal-00362190>
  • Patricia Thebault, Simon De Givry, Thomas Schiex, Christine Gaspin. Combining constraint processing and pattern matching to describe and locate structured motifs in genomic sequences.. Fifth IJCAI-05 Workshop on Modelling and Solving Problems with Constraints, Edindurgh, Scotland, 2005., 2005, United Kingdom. <hal-00362194>