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From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT(R) standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences

 J. Lane , Patrice Duroux , Mp Lefranc
BMC Bioinformatics, 2010, 11 (1), pp.223. ⟨10.1186/1471-2105-11-223⟩
Article dans une revue hal-00485592v1
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IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling

 Shuo Li , Marie-Paule Lefranc , John Miles , Eltaf Alamyar , Véronique Giudicelli , et al.
Nature Communications, 2013, 4 (1), pp.2333. ⟨10.1038/ncomms3333⟩
Article dans une revue hal-00875260v1
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IMGT®, the international ImMunoGeneTics information system® 25 years on

 Marie-Paule Lefranc , Véronique Giudicelli , Patrice Duroux , Joumana Jabado-Michaloud , Géraldine Folch , et al.
Nucleic Acids Research, 2015, 43, pp.D413-422. ⟨10.1093/nar/gku1056⟩
Article dans une revue hal-01101330v1

IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm

 Patrice Duroux , Quentin Kaas , Xavier Brochet , Jérôme Lane , Chantal Ginestoux , et al.
Biochimie, 2008, 90 (4), pp.570-583. ⟨10.1016/j.biochi.2007.09.003⟩
Article dans une revue istex hal-00275169v1

Antibody V and C Domain Sequence, Structure, and Interaction Analysis with Special Reference to IMGT(®)

 Eltaf Alamyar , Véronique Giudicelli , Patrice Duroux , Marie-Paule Lefranc
Monoclonal Antibodies, 1131, Humana Press, pp.337-381, 2014, Methods in Molecular Biology, 978-1-62703-991-8. ⟨10.1007/978-1-62703-992-5_21⟩
Chapitre d'ouvrage hal-00957488v1
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Adaptive Interface and BiODS Tools

 Patrice Duroux , Isabelle Mougenot , L. Regnier , Jean Sallantin
Tightening the Net, 2004
Communication dans un congrès lirmm-00108650v1

Descartes, A Methodical Elimination of Paradoxes for (de)-Ontology Building

 Jean Sallantin , Jacques Divol , Patrice Duroux , Germana Menezes da Nóbrega , Edilson Ferneda
CMSRA: Computational Models of Scientific Reasoning and Applications, Nov 2003, Buenos Aires, Argentina
Communication dans un congrès lirmm-00269687v1

ORIEL e-BioTasks: An Approach with the ODS Platform

 Patrice Duroux
Dealing with the Data Deluge2nd E-BioSci/ORIEL Annual Workshop, France. pp.P nd
Communication dans un congrès lirmm-00269830v1

DBAASP: Database of Antimicrobial Activity and Structure of Peptides

 G. Gogoladze , M. Grigolava , B. Vishnepolsky , M. Chubinidze , Patrice Duroux , et al.
FEMS Microbiology Letters, 2014, 357 (1), pp.63-68. ⟨10.1111/1574-6968.12489⟩
Article dans une revue hal-01057111v1
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IMGT/HighV-QUEST: the IMGT® web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing

 Eltaf Alamyar , Véronique Giudicelli , Shuo Li , Patrice Duroux , Marie-Paule Lefranc
Immunome Research, 2012, 8 (1), pp.26. ⟨10.4172/1745-7580.1000056⟩
Article dans une revue hal-00722909v1
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IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics.

 Marie-Paule Lefranc , Véronique Giudicelli , Laëtitia Regnier , Patrice Duroux
Briefings in Bioinformatics, 2008, 9 (4), pp.263-275. ⟨10.1093/bib/bbn014⟩
Article dans une revue hal-00357138v1
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IMGT/LIGM-DB, the IMGT® comprehensive database of immunoglobulin and T cell receptor nucleotide sequences.

 Véronique Giudicelli , Patrice Duroux , Chantal Ginestoux , Géraldine Folch , Joumana Jabado-Michaloud , et al.
Nucleic Acids Research, 2006, 34, pp.D781-D784. ⟨10.1093/nar/gkj088⟩
Article dans une revue hal-00069854v1

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.

 F. Pappalardo , Md Halling-Brown , N. Rapin , P. Zhang , D. Alemani , et al.
Briefings in Bioinformatics, 2009, 10 (3), pp.330-340. ⟨10.1093/bib/bbp014⟩
Article dans une revue hal-00399085v1
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IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST

 Véronique Giudicelli , Patrice Duroux , Sofia Kossida , Marie-Paule Lefranc
BMC Immunology, 2017, 18 (1), pp.35. ⟨10.1186/s12865-017-0218-8⟩
Article dans une revue hal-01549701v1
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IMGT® databases, related tools and web resources through three main axes of research and development

 Taciana Manso , Géraldine Folch , Véronique Giudicelli , Joumana Jabado-Michaloud , Anjana Kushwaha , et al.
Nucleic Acids Research, 2022, 50 (D1), pp.D1262-D1272. ⟨10.1093/nar/gkab1136⟩
Article dans une revue hal-04095746v1

Apprentissage et Rationalité vers une Construction Interactive de Théories Scientifiques

 Jean Sallantin , Jacques Divol , Germana Menezes da Nóbrega , Patrice Duroux
P. Aniorte;S. Gouarderes. Cognitique: Vers une Informatique plus Cognitive et Sociale, Cepadues, pp.P nd., 2003, 285-428-612-X
Chapitre d'ouvrage lirmm-00269672v1
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IMGT® Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci

 Perrine Pégorier , Morgane Bertignac , Viviane Nguefack Ngoune , Joumana Jabado-Michaloud , Véronique Giudicelli , et al.
Genes, 2020, 12 (1), pp.30. ⟨10.3390/genes12010030⟩
Article dans une revue hal-04114141v1
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IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST

 Safa Aouinti , Véronique Giudicelli , Patrice Duroux , Dhafer Malouche , Sofia Kossida , et al.
Frontiers in Immunology, 2016, 7, pp.339. ⟨10.3389/fimmu.2016.00339⟩
Article dans une revue hal-01386803v1

IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors - High-Throughput Version of IMGT/V-QUEST

 Eltaf Alamyar , Véronique Giudicelli , Patrice Duroux , Marie-Paule Lefranc
Journées Ouvertes de Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.60
Communication dans un congrès hal-04238517v1
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Conceptual Framework for Interactive Ontology Building

 Jean Sallantin , Christopher Dartnell , Jacques Divol , Patrice Duroux
ICCI 2003 - 2nd IEEE International Conference on Cognitive Informatics, Aug 2003, London, United Kingdom. pp.179-186
Communication dans un congrès lirmm-00269684v1

Requirements, Choice and Justification of Core Technologies and Concepts to be Employed for Implementation and Demonstration

 Isabelle Mougenot , Patrice Duroux , F. Daumas , Jean Sallantin
05061, 2002
Rapport lirmm-00268675v1
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IMGT® Biocuration and Comparative Study of the T Cell Receptor Beta Locus of Veterinary Species Based on Homo sapiens TRB

 Perrine Pégorier , Morgane Bertignac , Imène Chentli , Viviane Nguefack Ngoune , Géraldine Folch , et al.
Frontiers in Immunology, 2020, 11 (821), ⟨10.3389/fimmu.2020.00821⟩
Article dans une revue hal-04113881v1

IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.

 Eltaf Alamyar , Patrice Duroux , Marie-Paule Lefranc , Véronique Giudicelli
Methods in Molecular Biology, 2012, 882, pp.569-604. ⟨10.1007/978-1-61779-842-9_32⟩
Article dans une revue hal-00722893v1
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IMGT® Immunoinformatics Tools for Standardized V-DOMAIN Analysis

 Véronique Giudicelli , Patrice Duroux , Maël Rollin , Safa Aouinti , Géraldine Folch , et al.
Anton W. Langerak. Immunogenetics: Methods and Protocols, 2453, Springer US, pp.477-531, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_24⟩
Chapitre d'ouvrage hal-04082013v1
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Deep Learning concepts for genomics : an overview

 Merouane Elazami Elhassani , Loic Maisonnasse , Antoine Olgiati , Rey Jerome , Majda Rehali , et al.
EMBnet.journal, 2022, 27, pp.e990. ⟨10.14806/ej.27.0.990⟩
Article dans une revue hal-04075722v1
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PHYML Online: A Web Server for Fast Maximum Likelihood-Based Phylogenetic Inference

 Stéphane Guindon , F. Le Thiec , Patrice Duroux , Olivier Gascuel
Nucleic Acids Research, 2005, 33, pp.557-559. ⟨10.1093/nar/gki352⟩
Article dans une revue lirmm-00105317v1

A Computational Framework to Interactive (De) Ontology Building

 Jean Sallantin , Jacques Divol , Germana Menezes da Nóbrega , Eduardo Jose Ribeiro de Castro , Patrice Duroux , et al.
First Seminar on Advanced Research in Electronical Business, 2002, Rio de Janeiro, Brazil
Communication dans un congrès lirmm-00268667v1

Agent Rationnel : Architecture d'une Machine Assistant une Construction Interactive de Théories

 Jean Sallantin , Germana Menezes da Nóbrega , Jacques Divol , Patrice Duroux
Ph. Aniorte, S. Gouarderes. Cognitique: Vers une Informatique plus Cognitive et Sociale, Cepadues, pp.P nd., 2003, 285428612X
Chapitre d'ouvrage lirmm-00269783v1

Adaptive Interface for Genomic Scientific Discovery

 Patrice Duroux , Jacques Divol , Isabelle Mougenot , Jean Sallantin
JPGD'05: Journées Post-Génomique de la DOUA, France. pp.P nd
Communication dans un congrès lirmm-00269832v1

Use of IMGT® Databases and Tools for Antibody Engineering and Humanization

 Marie-Paule Lefranc , François Ehrenmann , Sofia Kossida , Véronique Giudicelli , Patrice Duroux
Antibody Engineering, 1827, Springer New York, pp.35-69, 2018, Methods in Molecular Biology, 978-1-4939-8647-7. ⟨10.1007/978-1-4939-8648-4_3⟩
Chapitre d'ouvrage hal-04237636v1
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