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Pascal Frey

41
Documents
Identifiants chercheurs

Présentation

Directeur de Recherches, HDR INRAE, Université de Lorraine UMR1136 "Interactions Arbres - Microorganismes" F-54280 Champenoux, FRANCE E-mail: pascal.frey at inrae.fr [https://mycor.nancy.inra.fr/IAM/?page\_id=731](https://mycor.nancy.inra.fr/IAM/?page_id=731) Directeur de l’[UMR1136 “Interactions Arbres-Microorganismes“](https://mycor.nancy.inra.fr/IAM/) Président de la [Société Française de Phytopathologie](https://www.sfp-asso.org/) (2008-2011, 2011-2014), membre depuis 1990. Coordinateur de la Division 7.02.05 “Rust of Forest Trees” de l’[IUFRO](https://www.iufro.org/) depuis 2014. Membre de l’[American Phytopathological Society](https://www.apsnet.org/) (APS) depuis 2005. Thématique de recherche : Biologie et génétique des populations d'agents pathogènes forestiers.

Publications

sebastien-duplessis
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A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

Clémentine Louet , Méline Saubin , Axelle Andrieux , Antoine Persoons , Mathilde Gorse
Molecular Ecology, 2023, 32 (10), pp.2472-2483. ⟨10.1111/mec.16294⟩
Article dans une revue hal-03510966v1
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy

Pamela Guerillot , Asaf Salamov , Clémentine Louet , Emmanuelle Morin , Pascal Frey
Phytopathology, 2023, 113 (2), pp.252-264. ⟨10.1094/PHYTO-04-22-0128-R⟩
Article dans une revue hal-03847696v1
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A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020).

Clémentine Louet , Sébastien Duplessis , Pascal Frey , Benjamin Petre
Frontiers in Plant Science, 2022, 13, pp.920281. ⟨10.3389/fpls.2022.920281⟩
Article dans une revue hal-03849040v1
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Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina

Antoine Persoons , Agathe Maupetit , Clémentine Louet , Axelle Andrieux , Anna Lipzen
Genome Biology and Evolution, 2022, 14 (1), 14 p. ⟨10.1093/gbe/evab279⟩
Article dans une revue hal-03606205v1
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The Rust Fungus Melampsora larici-populina Expresses a Conserved Genetic Program and Distinct Sets of Secreted Protein Genes During Infection of Its Two Host Plants, Larch and Poplar

Cécile Lorrain , Clémence Marchal , Stéphane Hacquard , Christine Delaruelle , Jeremy Petrowski
Molecular Plant-Microbe Interactions, 2018, 31 (7), pp.695-706. ⟨10.1094/MPMI-12-17-0319-R⟩
Article dans une revue hal-01893935v1
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Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

Michaël Pernaci , Stéphane de Mita , Axelle Andrieux , Jeremy Petrowski , Fabien Halkett
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00454⟩
Article dans une revue hal-01269013v1
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Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00450⟩
Article dans une revue hal-01269012v1
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Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

Stéphane Hacquard , Christine Delaruelle , Pascal Frey , Emilie Tisserant , Annegret Kohler
Frontiers in Plant Science, 2013, 4, ⟨10.3389/fpls.2013.00456⟩
Article dans une revue hal-01268532v1
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A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).

Stéphane Hacquard , David L. Joly , Yao-Cheng Lin , Emilie Tisserant , Nicolas Feau
Molecular Plant-Microbe Interactions, 2012, 25 (3), pp.279-293. ⟨10.1094/MPMI-09-11-0238⟩
Article dans une revue hal-01267890v1

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy.

Sébastien Duplessis , Stéphane S. Hacquard , Christine Delaruelle , Emilie Tisserant , Pascal Frey
Molecular Plant-Microbe Interactions, 2011, 24 (7), pp.808-818. ⟨10.1094/MPMI-01-11-0006⟩
Article dans une revue hal-02650884v1
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Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

Stéphane S. Hacquard , Claire Veneault-Fourrey , Christine Delaruelle , Pascal Frey , Francis Martin
Physiological and Molecular Plant Pathology, 2011, 75 (3), pp.106-112. ⟨10.1016/j.pmpp.2010.10.003⟩
Article dans une revue hal-02644005v1
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis , Christina A C. A. Cuomo , Yao-Cheng Y.-C. Lin , Andrea Aerts , Emilie Tisserant
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩
Article dans une revue hal-01000169v1
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The poplar-poplar rust interaction: insights from genomics and transcriptomics

Stéphane S. Hacquard , Benjamin Petre , Pascal Frey , Arnaud Hecker , Nicolas Rouhier
Journal of Pathogens, 2011, EPUB 2011
Article dans une revue hal-02642064v1

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation

Stéphane S. Hacquard , Christine Delaruelle , Valérie Legué , Emilie Tisserant , Annegret Kohler
Molecular Plant-Microbe Interactions, 2010, 23 (10), pp.1275-1286. ⟨10.1094/MPMI-05-10-0111⟩
Article dans une revue hal-02667759v1

Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina

Cecile Rinaldi , Annegret Kohler , Pascal Frey , Frédéric Duchaussoy , Francois Ningre
Plant Physiology, 2007, 144 (1), pp.347-366. ⟨10.1104/pp.106.094987⟩
Article dans une revue hal-01194961v1
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Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense

Nicolas Rouhier , Éric Gelhaye , J.M. Gualberto , M.N. Jordy , E. de Fay
Plant Physiology, 2004, 134 (3), pp.1027-1036
Article dans une revue hal-02680157v1

Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance gene

Louet C , Méline Saubin , Axelle Andrieux , A. Persoons , Gorce M
Molecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, e-symposia, Germany
Communication dans un congrès hal-03588311v1

From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populina

Clémentine Louet , Méline Saubin , Antoine Persoons , Axelle Andrieux , Bénédicte Fabre
Réunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France
Communication dans un congrès hal-03336539v1

Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Agathe Maupetit , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis
International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland
Communication dans un congrès hal-02785090v1

Demographic and genomic consequences of a major selective event in the poplar rust

Fabien Halkett , Antoine Persoons , Agathe Maupetit , Sébastien Duplessis , Pascal Frey
International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland
Communication dans un congrès hal-02790211v1

Update on Melampsora larici-populina genomics

Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey
11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France
Communication dans un congrès hal-02741208v1

On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
Réunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France
Communication dans un congrès hal-02792666v1

Mapping QTL of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France
Communication dans un congrès hal-02792933v1

Mapping QTL of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France
Communication dans un congrès hal-02793206v1

Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina

Benjamin Petre , Stéphane S. Hacquard , Antoine Persoons , Emilie Tisserant , Emmanuelle Morin
IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States
Communication dans un congrès hal-02801804v1

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France
Communication dans un congrès hal-02794927v1
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Genome-wide signature of adaptation in a recently introduced pathogen

N. Feau , Pascal Frey , Sébastien Duplessis , R. C. Hamelin
APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Communication dans un congrès hal-01268359v1

Les apports de la génomique pour l’étude des familles multigéniques : exemple des thaumatin-like proteins (TLPs) chez le peuplier

Benjamin Petre , Ian Major , Pascal Frey , Francis Martin , Nicolas Rouhier
Séminaire de l’Ecole Doctorale RP2E. Biodiversité, Ingénierie écologique, Jan 2011, Vandoeuvre-lès-Nancy, France. 8 p
Communication dans un congrès hal-02746248v1
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Breeding poplars with durable resistance to Melampsora larici-populina leaf rust : a multidisciplinary approach to understand and delay pathogen adaptation

Arnaud A. Dowkiw , Catherine Bastien , Véronique V. Jorge , Marc M. Villar , Elodie Voisin
4. International Workshop on the Genetics of Host-Parasite Interactions in Forestry : "Disease and Insect Resistance in Forest Trees", United States Department of Agriculture - USDA (USA) (USDA). Forest service, Ville service, USA., Jul 2011, Eugene, Oregon, United States. 112 p
Communication dans un congrès hal-02748005v1
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No resistance is sacrosanct: unveiling the genes controlling quantitative resistance to Melampsora larici-populina in interspecific hybrid poplars and quantifying potential adaptation of the pathogen

Arnaud A. Dowkiw , Véronique V. Jorge , Elodie Voisin , Patricia P. Faivre-Rampant , Alois Bresson
4. International Rusts of Forest Trees Conference. IUFRO Working Party 02.07.05, May 2010, Florence, Italy
Communication dans un congrès hal-02754692v1
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Towards broad-spectrum resistance to Melampsora larici-populina rust in poplar: new genetic constructions and potential adaptation of the pathogen

Catherine Bastien , Arnaud A. Dowkiw , Véronique V. Jorge , Elodie Voisin , Vanina Guérin
5. International Poplar Symposium;IPS V, Sep 2010, Orvieto, Italy
Communication dans un congrès hal-02753480v1

Joint transcriptomic and proteomic approaches to precise the molecular basis of a major QTL (RUS) controlling quantitative rust resistance in poplar

Véronique V. Jorge , Sébastien Duplessis , Céline C. Lalanne , Alois Bresson , Arnaud A. Dowkiw
Plant genomics and beyond, Jul 2009, Evry, France
Communication dans un congrès hal-02756173v1

Molecular characterisation of a major QTL for rust resistance in poplar using a proteomic approach

Céline C. Lalanne , Catherine Bastien , Pascal Frey , Arnaud A. Dowkiw , Véronique V. Jorge
IUFRO - Tree Biotechnology, Jun 2007, Ponta Delgada, Azores, Portugal
Communication dans un congrès hal-02754112v1

Characterization of the early response of poplar to rust infection using expression profiling

Sébastien Duplessis , Annegret Kohler , Cécile Rinaldi , Pascal Frey , Francis Martin
12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p
Communication dans un congrès hal-02830800v1

The poplar rust fungus effector biology: challenges of functional characterization of effectors in a non-model system

Cécile Lorrain , Benjamin Petre , Diane G. O. Saunders , Jan Sklenar , Win J
29th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Poster de conférence hal-03253573v1

Supersize fungi: Rust in the genomics era!

Cécile Lorrain , Mondo Sj , Emmanuelle Morin , Kurt M Labutti , Anna Lipzen
29th Fungal Genetics Conference, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Poster de conférence hal-03253560v1

Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus

Agathe Maupetit , Michaël Pernaci , Bénédicte Fabre , Sébastien Duplessis , Stéphane de Mita
11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. , 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France)
Poster de conférence hal-02740999v1

Update on Melampsora larici-populina genomics

Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey
13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France
Poster de conférence hal-03253579v1
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INTERPOPGER: Interactions between natural and artificial poplar stands and selection pressures associated with their management in French landscape. Poster.

Véronique V. Jorge , Arnaud A. Dowkiw , Mary Juteau , Vanina Guérin , Patrick Poursat
Population genetics and genomics of forest trees : from gene function to evolutionary dynamics and conservation; A joint conference of IUFRO working groups 2.04.01 (population, ecological and conservation genetics) and 2.04.10 (genomics), and COST Action E-28 (genosilva : european forest genomics network), Oct 2006, Madrid, Spain. 1 p., 2006, Population genetics and genomics of forest trees: from gene function to evolutionary dynamics and conservation. Programme and conference abstract book
Poster de conférence hal-02755567v1