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The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes
Caroline Vernette
,
Julien Lecubin
,
Pablo Sánchez
,
(team) Tara Oceans Coordinators
,
Shinichi Sunagawa
Article dans une revue
hal-03696136v1
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Macroscale patterns of oceanic zooplankton composition and size structure
Manoela Brandão
,
Fabio Benedetti
,
Séverine Martini
,
Yawouvi Dodji Soviadan
,
Jean-Olivier Irisson
Article dans une revue
hal-03318806v1
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
Silvia Acinas
,
Pablo Sánchez
,
Guillem Salazar
,
Francisco Cornejo-Castillo
,
Marta Sebastián
Article dans une revue
hal-03238997v1
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The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.
Caroline Vernette
,
Nicolas Henry
,
Julien Lecubin
,
Colomban de Vargas
,
Pascal Hingamp
Article dans une revue
hal-03115219v1
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Diversity and evolution of bacterial bioluminescence genes in the global ocean
Thomas Vannier
,
Pascal Hingamp
,
Floriane Turrel
,
Lisa Tanet
,
Magali Lescot
Article dans une revue
hal-02514159v1
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Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Guillem Salazar
,
Lucas Paoli
,
Adriana A. Alberti
,
Jaime Huerta-Cepas
,
Hans-Joachim Ruscheweyh
Article dans une revue
hal-02964513v1
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Minimum Information about an Uncultivated Virus Genome (MIUViG)
Simon Roux
,
Evelien M. Adriaenssens
,
Bas E. Dutilh
,
Eugene V. Koonin
,
Andrew M. Kropinski
Article dans une revue
pasteur-01977322v1
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Marine DNA viral macro- and microdiversity from Pole to Pole
Ann Gregory
,
Ahmed Zayed
,
Nádia Conceição-Neto
,
Ben Temperton
,
Ben Bolduc
Article dans une revue
hal-02387010v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Luigi Caputi
,
Quentin Carradec
,
Damien Eveillard
,
Amos Kirilovsky
,
Eric Pelletier
Article dans une revue
hal-02999805v1
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Microbial abundance, activity and population genomic profiling with mOTUs2
Alessio Milanese
,
Daniel Mende
,
Lucas Paoli
,
Guillem Salazar
,
Hans-Joachim Ruscheweyh
Article dans une revue
hal-02281129v1
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Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters
Yanze Li
,
Pascal Hingamp
,
Hiroyasu Watai
,
Hisashi Endo
,
Takashi Yoshida
Article dans une revue
hal-01874850v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Yoann Seeleuthner
,
Samuel Mondy
,
Vincent Lombard
,
Quentin Carradec
,
Eric Pelletier
Article dans une revue
hal-01771839v1
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A global ocean atlas of eukaryotic genes
Quentin Carradec
,
Eric Pelletier
,
Corinne da Silva
,
Adriana A. Alberti
,
Yoann Seeleuthner
Article dans une revue
cea-01874711v1
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The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Emilie Villar
,
Thomas Vannier
,
Caroline Vernette
,
Magali Lescot
,
Miguelangel Cuenca
Article dans une revue
hal-01803597v1
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Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
Takashi Yoshida
,
Yosuke Nishimura
,
Hiroyasu Watai
,
Nana Haruki
,
Daichi Morimoto
Article dans une revue
hal-01771838v1
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Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean
Tomoko Mihara
,
Hitoshi Koyano
,
Pascal Hingamp
,
Nigel Grimsley
,
Susumu Goto
Article dans une revue
hal-01978927v1
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Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
Yosuke Nishimura
,
Hiroyasu Watai
,
Takashi Honda
,
Tomoko Mihara
,
Kimiho Omae
Article dans une revue
hal-01771841v1
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Adriana A. Alberti
,
Julie Poulain
,
Stefan Engelen
,
Karine Labadie
,
Sarah Romac
Article dans une revue
hal-01771844v1
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Linking Virus Genomes with Host Taxonomy.
Tomoko Mihara
,
Yosuke Nishimura
,
Yugo Shimizu
,
Hiroki Nishiyama
,
Genki Yoshikawa
Article dans une revue
hal-01435950v1
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Francisco M. Cornejo-Castillo
,
Ana M. Cabello
,
Guillem Salazar
,
Patricia Sánchez-Baracaldo
,
Gipsi Lima-Mendez
Article dans une revue
hal-01295207v1
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Plankton networks driving carbon export in the oligotrophic ocean
Lionel Guidi
,
Samuel Chaffron
,
Lucie Bittner
,
Damien Eveillard
,
Abdelhalim Larhlimi
Article dans une revue
hal-01275276v1
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Open science resources for the discovery and analysis of Tara Oceans data
Stéphane Pesant
,
Fabrice Not
,
Marc Picheral
,
Stefanie Kandels-Lewis
,
Noan Le Bescot
Article dans une revue
hal-01253984v1
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Eukaryotic plankton diversity in the sunlit ocean
Noan Le Bescot
,
Ian Probert
,
Margaux Carmichael
,
Julie Poulain
,
Sarah Romac
Article dans une revue
hal-01253979v1
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Environmental characteristics of Agulhas rings affect interocean plankton transport
Emilie Villar
,
Gregory Farrant
,
Michael Follows
,
Laurence Garczarek
,
Sabrina Speich
Article dans une revue
hal-01893637v1
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Structure and function of the global ocean microbiome
Shinichi Sunagawa
,
Luis Pedro Coelho
,
Samuel Chaffron
,
Jens Roat Kultima
,
Karine Labadie
Article dans une revue
hal-01233742v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Magali Lescot
,
Pascal Hingamp
,
Kenji K Kojima
,
Emilie Villar
,
Sarah Romac
Article dans une revue
hal-01258212v1
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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Camille Clerissi
,
Yves Desdevises
,
Sarah Romac
,
Stéphane Audic
,
Colomban de Vargas
Article dans une revue
hal-01246259v1
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Patterns and ecological drivers of ocean viral communities
Jennifer Brum
,
J Cesar Ignacio-Espinoza
,
Simon Roux
,
Guilhem Doulcier
,
Silvia G. Acinas
Article dans une revue
hal-01768331v1
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QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate
Emese Meglécz
,
Nicolas Pech
,
André Gilles
,
Vincent Dubut
,
Pascal Hingamp
Article dans une revue
hal-02356473v1
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares
,
Shinichi Sunagawa
,
Guillem Salazar
,
Francisco M. Cornejo-Castillo
,
Isabel Ferrera
Article dans une revue
hal-01258219v1
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Pascal Hingamp
,
Nigel Grimsley
,
Silvia G Acinas
,
Camille Clerissi
,
Lucie Subirana
Article dans une revue
hal-01258223v1
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A Holistic Approach to Marine Eco-Systems Biology
Eric Karsenti
,
Silvia G. Acinas
,
Peer Bork
,
Chris Bowler
,
Colomban de Vargas
Article dans une revue
hal-01893669v1
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Metagenome Annotation Using a Distributed Grid of Undergraduate Students
P. Hingamp
,
Céline Brochier-Armanet
,
E. Talla
,
D. Gautheret
,
D. Thieffry
PLoS Biology, 2008, 6, pp.239-241
Article dans une revue
hal-00697953v1
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Feature extraction and signal processing for nylon DNA microarrays.
Fabrice Lopez
,
Jacques Rougemont
,
Béatrice Loriod
,
Aude Bourgeois
,
Laurence Loï
Article dans une revue
inserm-00112016v1
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DNA microarray data and contextual analysis of correlation graphs.
Jacques Rougemont
,
Pascal Hingamp
Article dans une revue
inserm-00115584v1
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EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database
V. Lombard
,
E.B. Camon
,
H.E. Parkinson
,
P. Hingamp
,
G. Stoesser
Bioinformatics, 2002, 18, pp.763-764
Article dans une revue
hal-00427286v1
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Divergent N-terminal sequences target an inducible testis deubiquitinating enzyme to distinct subcellular structures
H. Lin
,
A. Keriel
,
C.R. Morales
,
N. Bedard
,
Q. Zhao
Molecular and Cellular Biology, 2000, 20 (17), pp.6568-6578
Article dans une revue
hal-02695857v1
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Divergent N-terminal sequences target an inducible testis deubiquitinating enzyme to distinct subcellular structures.
L. Lin
,
Anne Keriel
,
C. Morales
,
N Bedard
,
Q. Zhao
Molecular and Cellular Biology, 2000, 20 (17), pp.6568-78
Article dans une revue
hal-01994377v1
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