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93

Pascal Croiseau

GABI, équipe G2B
Domaine de Vilvert,
78352 Jouy en Josas
01-34-65-21-97
pascal.croiseau@inrae.fr                                                                                                                                        

FORMATIONS et EXPERIENCES PROFESSIONNELLES

Parcours professionnel

2008: Recrutement CRCN à l’INRAE de Jouy en Josas, unité GABI, équipe G2B

Mes travaux de recherches portent sur l’exploitation de données génomiques bovine. Je peux en isoler deux composantes complémentaires : (1) D’une part l’identification et la comparaison de méthodes statistiques pour la sélection génomique. La sélection génomique consiste à prédire la valeur génétique d’animaux candidats à la sélection en exploitant les informations apportées par une population de référence. Je contribue à la mise en place et à l’amélioration des modèles de sélection génomique utilisés pour les évaluations génétiques nationales. (2) D’autre part, la sélection génomique s’appuie sur la connaissance des régions QTL. Pour améliorer la qualité de prédiction de nos méthodes, l’identification et la localisation des QTL est une étape clé.

Si durant la période 2008-2015, mes travaux ont été guidés par l’accès à de nouvelles technologies (exploitation de la puce 50K pour la mise en place d’une évaluation génomique officielle en France chez les grandes races bovines laitières ; exploitation d’une puce haute densité pour améliorer la précision des évaluations génomiques et étendre ces évaluations aux races régionales), depuis 2015, mes travaux visent à exploiter les propriétés des méthodes d’évaluation génomique ainsi que de la sélection génomique mise en place dans les entreprises de sélection pour répondre aux grands enjeux de demain tel que le maintien de la diversité génétique ou encore le développement d’une évaluation génomique en croisement.

Diplômes

2021: Habilitation à Diriger des Recherches (Université Paris-Saclay)

2004-2008: Doctorat de l’Université de Paris-Sud, Ecole doctorale Gène Génome Cellule, spécialité : génétique statistique (Mention très honorable).

Cette thèse a été réalisée sous la direction de E. Génin à l’unité INSERM 535 (Hôpital Paul Brousse, Villejuif, directrice : F. Clerget-Darpoux) et soutenue le 14 janvier 2008 devant le jury :

  • Mr De Vienne, professeur à l’université Paris Sud (Président)
  • Mme Bickeböller, professeur à l’université de Gottingen, Allemagne (Rapporteur)
  • Mr Tregouet, CR à l’unité INSERM U525 (Rapporteur)
  • Mr Alizadeh, CR à l’Etablissement Français du Sang (Examinateur)
  • Mme Le Roy, DR à l’Agrocampus INRA de Rennes (Examinateur)

Sujet: Influence et traitement des données manquantes dans les études d’association en génétique: application à la Sclérose en Plaques.

2003-2004: D.E.A. de génétique multifactorielle, Université Paris Sud.
2001-2003: Licence-Maîtrise de Biologie Informatique, Université Paris VII.
1999-2001: DEUG de biologie, Université Paris VII.

 Formations complémentaires en France

2004: Déterminisme génétique de la Sclérose en Plaques : Rôle de 2 gène candidats (CTLA4 et HLA-DRB1). Directrice de stage : E. Génin ; INSERM U535, stage de DEA : 6 mois.
2004: Analyse génétique de lignées de poules sélectionnées pour des réponses immunitaires. Directrice de stage : M.H. Pinard ; INRA (Jouy en Josas), stage de DEA, 3 mois.

Formations complémentaires à l’étranger

2007: Post-doctorat à l’Institut de Génétique Humaine de l’Université de Newcastle (Angleterre). Responsable : Heather Cordell.

ENSEIGNEMENTS

2008-2020 : Master PRIAM

  • Responsable de la filière "animal breeding and genetics"
  • Intervenant dans le module "Genome Analysis"

Encadrements :

  • Encadrement de 6 stages de niveau M2
  • Encadrement de 7 doctorants

EXPERTISES SCIENTIFIQUES

  • Membre de comités de thèse
  • Membre de jury de thèse
  • Membre de jury de recrutement de M2 et de thèses
  • Membre du jury pour les concours de Chargé de Recherche Classe Normal.
  • Membre nommé au sein de la section "production animale" de la Comission Nationale des Enseignants-Chercheurs relevant du ministre de l'Agriculture (CNECA)
  • Membre élu du Conseil Scientifique du département de Génétique Animale de l'INRAE.

LANGUE et LANGAGES

 Langue

  •  Anglais (parlé, lu, écrit)

 Compétences informatiques

  •  Système d’exploitation : Linux, Unix, Windows.
  •  Langage de programmation : Awk, C, fortran, R

COMPETENCES SCIENTIFIQUES ET GESTION DE PROJETS

Compétences en génétique

  • Génétique quantitative
  • Détection de QTL
  • Sélection génomique

Montage et Gestion de projets

  • Animateur de work package dans différents projets (projet ANR Gembal, projet CASDAR RT UniGeno, projet APIS-GENE ASAP, EvaGenoc, ...)
  • Animateur d'une tache du projet européen RUMIGEN
  • Porteur de projets (méta-programme SELGEN : INCOMINGS, GDivSelGen, méta-programme DigitBio : DeepPhenomic)

Production scientifique :

  • 26 publications dans des revues avec comité de lecture
  • 71 publications dans des actes de congrès avec comité de lecture
  • 2 chapitres de livres
  • 2 licences de savoir-faire en tant que co-inventeur du procédé de sélection génomique en France.

Journal articles25 documents

  • Fanny Mollandin, Hélène Gilbert, Pascal Croiseau, Andrea Rau. Accounting for overlapping annotations in genomic prediction models of complex traits. BMC Bioinformatics, BioMed Central, 2022, 23 (1), 22 p. ⟨10.1186/s12859-022-04914-5⟩. ⟨hal-03770583⟩
  • Fanny Mollandin, Andrea Rau, Pascal Croiseau. An evaluation of the predictive performance and mapping power of the BayesR model for genomic prediction. G3, Genetics Society of America, 2021, 11 (11), ⟨10.1093/g3journal/jkab225⟩. ⟨hal-03485736⟩
  • Thierry Tribout, Pascal Croiseau, Rachel Lefebvre, Anne Barbat, Mekki Boussaha, et al.. Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle. Genetics Selection Evolution, BioMed Central, 2020, 52 (1), ⟨10.1186/s12711-020-00575-1⟩. ⟨hal-03155461⟩
  • Anna-Charlotte Doublet, Gwendal Restoux, Sébastien Fritz, Laura Balberini, Guillaume Fayolle, et al.. Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds. Animals, MDPI, 2020, 10 (10), pp.1903. ⟨10.3390/ani10101903⟩. ⟨hal-02975056⟩
  • Anna-Charlotte Doublet, Pascal Croiseau, Sébastien Fritz, Alexis Michenet, Chris Hozé, et al.. The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds. Genetics Selection Evolution, BioMed Central, 2019, 51 (1), pp.52. ⟨10.1186/s12711-019-0495-1⟩. ⟨hal-02300856⟩
  • Sonia Eynard, Pascal Croiseau, Denis Laloë, Sébastien Fritz, Mario P. L. Calus, et al.. Which individuals to choose to update the reference population? Minimizing the loss of genetic diversity in animal genomic selection programs. G3, Genetics Society of America, 2018, 8 (1), pp.113-121. ⟨10.1534/g3.117.1117⟩. ⟨hal-01684895⟩
  • Aniek C. Bouwman, Hans D. Daetwyler, Amanda J. Chamberlain, Carla Hurtado Ponce, Mehdi Sargolzaei, et al.. Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature Genetics, Nature Publishing Group, 2018, 50 (3), pp.362-367. ⟨10.1038/s41588-018-0056-5⟩. ⟨hal-02628780⟩
  • Marc Teissier, Marie-Pierre Sanchez, Mekki Boussaha, Anne Barbat, Chris Hoze, et al.. Use of meta-analyses and joint analyses to select variants in whole genome sequences for genomic evaluation : An application in milk production of French dairy cattle breeds. Journal of Dairy Science, American Dairy Science Association, 2018, 101 (4), ⟨10.3168/jds.2017-13587⟩. ⟨hal-02623397⟩
  • Marie-Pierre Sanchez, Armelle Govignon-Gion, Pascal Croiseau, Sébastien Fritz, Chris Hozé, et al.. Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle. Genetics Selection Evolution, BioMed Central, 2017, 49 (1), pp.68. ⟨10.1186/s12711-017-0344-z⟩. ⟨hal-01589691⟩
  • David Jonas, Vincent Ducrocq, Pascal Croiseau. The combined use of linkage disequilibrium-based haploblocks and allele frequency-based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle. Journal of Dairy Science, American Dairy Science Association, 2017, 100 (4), pp.2905-2908. ⟨10.3168/jds.2016-11798⟩. ⟨hal-01605119⟩
  • David Jonas, Vincent Ducrocq, S. Fritz, A. Baur, Marie-Pierre Sanchez, et al.. Genomic evaluation of regional dairy cattle breeds in single-breed and multibreed contexts. Journal of Animal Breeding and Genetics, Wiley, 2017, 134 (1), pp.3-13. ⟨10.1111/jbg.12249⟩. ⟨hal-01484842⟩
  • Didier Boichard, Vincent Ducrocq, Pascal Croiseau, Sebastien S. Fritz. Genomic selection in domestic animals: Principles, applications and perspectives. Comptes Rendus Biologies, Elsevier, 2016, 339 (7-8), pp.274-277. ⟨10.1016/j.crvi.2016.04.007⟩. ⟨hal-02641310⟩
  • David Jonas, Vincent Ducrocq, Marie-Noelle Fouilloux, Pascal Croiseau. Alternative haplotype construction methods for genomic evaluation. Journal of Dairy Science, American Dairy Science Association, 2016, 99 (6), pp.4537-4546. ⟨10.3168/jds.2015-10433⟩. ⟨hal-01533890⟩
  • Andres Legarra, Pascal Croiseau, Marie-Pierre Sanchez, Simon Teyssedre, Guillaume Salle, et al.. A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species. Genetics Selection Evolution, BioMed Central, 2015, 47 (1), pp.1-10. ⟨10.1186/s12711-015-0087-7⟩. ⟨hal-01190172⟩
  • C. Hozé, Sébastien Fritz, Florence Phocas, Didier Boichard, Vincent Ducrocq, et al.. Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population. Journal of Dairy Science, American Dairy Science Association, 2014, 97 (6), pp.3918-3929. ⟨10.3168/jds.2013-7761⟩. ⟨hal-01193830⟩
  • Carine Colombani Colombani, Andres Legarra, Sebastien S. Fritz, François F. Guillaume, Pascal Croiseau, et al.. Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds. Journal of Dairy Science, American Dairy Science Association, 2013, 96 (1), pp.575-591. ⟨10.3168/jds.2011-5225⟩. ⟨hal-01001340⟩
  • Chris Hoze Hozé, Marie-Noëlle M.-N. Fouilloux, Eric E. Venot, François F. Guillaume, Romain R. Dassonneville, et al.. High-density marker imputation accuracy in sixteen French cattle breeds. Genetics Selection Evolution, BioMed Central, 2013, 45 (1), pp.1-11. ⟨10.1186/1297-9686-45-33⟩. ⟨hal-01001056⟩
  • Carine Colombani Colombani, Pascal Croiseau, S. S. Fritz, F. F. Guillaume, Andres Legarra, et al.. A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle. Journal of Dairy Science, American Dairy Science Association, 2012, 95 (4), pp.2120-2131. ⟨10.3168/jds.2011-4647⟩. ⟨hal-01000898⟩
  • Didier Boichard, Francois F. Guillaume, A. A. Baur, Pascal Croiseau, Marie-Noëlle M.-N. Rossignol, et al.. Genomic selection in French dairy cattle. Animal Production Science, 2012, 52 (3), pp.115-120. ⟨10.1071/AN11119⟩. ⟨hal-01000202⟩
  • Andres Legarra, Christèle C. Robert-Granié, Pascal Croiseau, François F. Guillaume, Sébastien S. Fritz. Improved lasso for genomic selection. Genetics Research, Cambridge University Press (CUP), 2011, 93 (1), pp.77-87. ⟨10.1017/S0016672310000534⟩. ⟨hal-01000151⟩
  • Pascal Croiseau, Andres Legarra, François F. Guillaume, Sébastien S. Fritz, Aurélia A. Baur, et al.. Fine tuning genomic evaluations in dairy cattle through SNP pre-selection with the Elastic-Net algorithm. Genetics Research, Cambridge University Press (CUP), 2011, 93 (6), pp.409-417. ⟨10.1017/S0016672311000358⟩. ⟨hal-01000269⟩
  • Pascal Croiseau, Emmanuelle Génin, Claire Bardel. Efficiency of multiple imputation to test for association in the presence of missing data.. BMC Proceedings, BioMed Central, 2007, 1 Suppl 1 (Suppl 1), pp.S24. ⟨inserm-00143688⟩
  • Claire Bardel, Pascal Croiseau, Emmanuelle Génin. Dealing with missing phase and missing data in phylogeny-based analysis.. BMC Proceedings, BioMed Central, 2007, 1 Suppl 1 (1), pp.S22. ⟨inserm-00284150⟩
  • Emmanuelle Génin, Pascal Croiseau, Heather J. Cordell. Dealing with missing data in family-based association studies: a multiple imputation approach. Human Heredity, Karger, 2007, 63 (3-4), pp.229. ⟨inserm-00143682⟩
  • Laëtitia Michou, Pascal Croiseau, Elisabeth Petit-Teixeira, Sophie Tezenas Du Montcel, Isabelle Lemaire, et al.. Validation of the reshaped shared epitope HLA-DRB1 classification in rheumatoid arthritis.. Arthritis Research and Therapy, BioMed Central, 2006, 8, pp.R79. ⟨10.1186/ar1949⟩. ⟨inserm-00080406⟩

Conference papers60 documents

  • Fanny Mollandin, Pascal Croiseau, Andrea Rau. Exploiting prior knowledge into genomic prediction models with BayesRCO. 50th European Mathematical Genetics Meeting (EMGM), Apr 2022, Cambridge, United Kingdom. ⟨hal-03744755⟩
  • P Croiseau, R Saintilan, A Baur, I Croue, V Ducrocq, et al.. Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). 12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. ⟨hal-03731279⟩
  • M P Sanchez, T Tribout, N Kadri, P K Chitneedi, S Maak, et al.. Sequence-based GWAS meta-analyses for beef production traits. 12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. ⟨hal-03731341⟩
  • Fanny Mollandin, Hélène Gilbert, Pascal Croiseau, Andrea Rau. Capitalizing on complex annotations in Bayesian genomic prediction for a backcross population of growing pigs. 12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. ⟨hal-03742045⟩
  • D Boichard, S Fritz, P Croiseau, V Ducrocq, B Cuyabano, et al.. Long-distance associations generate erosion of genomic breeding values of candidates for selection. 12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. ⟨hal-03731274⟩
  • R Saintilan, P Croiseau, A Baur, I Croue, V Ducrocq, et al.. Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). ICAR/Interbull Annual Conference, May 2022, Montréal, Canada. ⟨hal-03744840⟩
  • Fanny Mollandin, Andrea Rau, Pascal Croiseau. Evaluating the Interpretability of SNP Effect Size Classes in Bayesian Genomic Prediction Models. 49th European Mathematical Genetics Meeting (EMGM), Apr 2021, Paris, France. pp.69-100, ⟨10.1159/000516194⟩. ⟨hal-03744745⟩
  • Baber Ali, Fanny Mollandin, Pascal Croiseau. The Use of A Priori Biological Information to Evaluate the Ability of BayesRC Model in Genomic Prediction. 72st Annual Meeting of the European Association for Animal Production, Aug 2021, Davos, Switzerland. ⟨hal-03742059⟩
  • Thierry Tribout, Pascal Croiseau, Rachel Lefebvre, Anne Barbat, Mekki Boussaha, et al.. Sequence -based GWAS for milk production traits, udder health and morphology in French dairy cattle. 71th Annual Meeting of the European Association for Animal Production, Dec 2020, Virtual, France. ⟨hal-03037105⟩
  • Katy Paul, Anna-Charlotte Doublet, Denis Laloë, Pascal Croiseau, Gwendal Restoux. Evolution of ROH’s distribution along the genome over a decade of genomic selection in dairy cattle. 70tH Annual meeting of the European Federation of Animal Science, Aug 2019, Ghent, Belgium. ⟨hal-03002817⟩
  • Anna-Charlotte Doublet, Gwendal Restoux, Susanne Fritz, Alexis Michenet, Chris Hozé, et al.. Impact of multiple ovulation and embryo transfer on genetic gain and diversity in dairy cattle. 70th Annual Meeting of European Federation of Animal Science, Aug 2019, Ghent, Belgium. ⟨hal-03002820⟩
  • Anna-Charlotte Doublet, Gwendal Restoux, Sébastien Fritz, Alexis Michenet, Chris Hozé, et al.. Impact of multiple ovulation and embryo transfer on genetic gain and diversity in dairy cattle. 70. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2019, Gant, Belgium. ⟨hal-02948778⟩
  • Katy Paul, Anna-Charlotte Doublet, Denis Laloë, Pascal Croiseau, Gwendal Restoux. Evolution of ROH's distribution along the genome over a decade of genomic selection in dairy cattle. 69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. ⟨hal-02948765⟩
  • Pascal Croiseau, Chris Hozé, Sebastien Fritz, Marie-Pierre Sanchez, Thierry Tribout. Inclusion of candidate mutations in genomic evaluation for French dairy cattle breeds. 69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. ⟨hal-02948756⟩
  • Thierry Tribout, D Boichard, M P Sanchez, Sebastien Fritz, Pascal Croiseau. Use of whole sequence GWAS to improve genomic evaluation in dairy cattle. World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, Australia. ⟨hal-02948451⟩
  • Vincent Ducrocq, Pascal Croiseau, David Jonas, Sebastien Fritz. Use of haploblocks in genomic evaluation of Holsteins.. World congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, Australia. ⟨hal-02948405⟩
  • Didier Boichard, Mekki Boussaha, Aurelien Capitan, Dominique Rocha, Chris Hoze, et al.. Experience from large scale use of the EuroGenomics custom SNP chip in cattle. 11. World Congress of Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand. ⟨hal-02737523⟩
  • Pascal Croiseau, Sebastien Fritz, Chris Hozé, Alexis Michenet, Denis Laloë, et al.. The impact of genomic selection on genetic diversity and genetic gain in French dairy cattle breeds.. 69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2017, Dubrovnik, Croatia. ⟨hal-02948746⟩
  • Pascal Croiseau, Thierry Tribout, Didier Boichard, Marie-Pierre Sanchez, Sebastien Fritz. Use of whole sequence GWAS to improve genomic evaluation in dairy cattle. 24. Plant and Animal Genome Conference, Jan 2017, San Diego, United States. ⟨hal-01608241⟩
  • Pascal Croiseau, Thierry Tribout, Didier Boichard, Marie-Pierre Sanchez, Sebastien Fritz. Use of whole sequence GWAS to improve genomic evaluation in dairy cattle. Plant and Animal Genome Conference, Jan 2017, San Diego, United States. ⟨hal-02949244⟩
  • Thierry Tribout, Marine Barbat, Armelle Gion, Amandine Launay, Rachel Lefebvre, et al.. Using whole genome sequences to identify QTL for udder health and morphology in French dairy cattle. 67. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2016, Belfast, United Kingdom. ⟨hal-02739792⟩
  • Didier Boichard, Vincent Ducrocq, Pascal Croiseau, Sebastien S. Fritz. How is genomics changing cattle breeding?. JAM Joint Annual Meeting, Jul 2016, Salt Lake City, United States. ⟨hal-02738726⟩
  • Eric Venot, Anne Barbat, Didier Boichard, Pascal Croiseau, Vincent Ducrocq, et al.. French genomic experience: genomics for all ruminant species. 2016 Interbull Meeting, Oct 2016, Puerto Varas, Chile. ⟨hal-02743221⟩
  • Didier Boichard, Marie-Pierre Sanchez, Anne Barbat, Mekki Boussaha, Thierry Tribout, et al.. Identification of candidate causal variants underlying QTL in dairy cattle through GWAS and Bayesian approach at the sequence level. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. ⟨hal-02792675⟩
  • Eric Venot, Didier Boichard, Vincent Ducrocq, Pascal Croiseau, S. Fritz, et al.. French genomic experience: genomics for all ruminant species. 40. Biennal session of ICAR, Oct 2016, Puerto Varas, Chile. ⟨hal-01606324⟩
  • Marie-Pierre Sanchez, David Jonas, Aurélia Baur, Vincent Ducrocq, Chris Hoze, et al.. Mise en place d’une évaluation génomique en races Abondance, Tarentaise et Vosgienne. 23. Rencontres autour des Recherches sur les Ruminants, Dec 2016, Paris, France. ⟨hal-01602322⟩
  • Marie-Pierre Sanchez, Armelle Gion Govignon-Gion, Pascal Croiseau, Anne Barbat, M. Gelé, et al.. Identification of causal variants for milk protein composition using sequence data in dairy cattle. 66. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2015, Warsaw, Poland. ⟨hal-02739078⟩
  • Marc Teissier, Marie-Pierre Sanchez, Eric Venot, Rabia Letaief, Pascal Croiseau. Multibreed association studies at the sequence level : comparison between meta and joint analyses.. 66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. ⟨hal-02949217⟩
  • Armelle Gion Govignon-Gion, Didier Boichard, Pascal Croiseau, Anne Barbat-Leterrier, Chris Hoze Hoze, et al.. ldentification de mutations candidates affectant la composition du lait en acides gras et protéines par analyse d’association sur la séquence du génome dans les races Holstein, Montbéliarde et Normande. 22. Rencontres autour des Recherches sur les Ruminants, Dec 2015, Paris, France. 409 p. ⟨hal-02744189⟩
  • Romain Philippe, Gilles Renand, Sebastien Fritz, Pascal Croiseau, Romain Saintilan, et al.. In silico detection of causal mutation in beef cattle.. Journée ouvertes en Biologie, Informatique et Mathématique, Sep 2015, Clermont Ferrand, France. ⟨hal-02949227⟩
  • Armelle Gion Govignon-Gion, Marie-Pierre Sanchez, Pascal Croiseau, Anne Barbat, Sebastien S. Fritz, et al.. Using genomes sequences to identify causal variants for milk fatty acids in dairy cattle. 66. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2015, Warsaw, Poland. ⟨hal-02738654⟩
  • Armelle Gion, Marie-Pierre Sanchez, Pascal Croiseau, Anne Barbat, S. Fritz, et al.. Using sequences data to identify causal variants for milk fatty acids composition in dairy cattle. 66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. 577 p. ⟨hal-01536474⟩
  • David Jonas, Vincent Ducrocq, Pascal Croiseau. Haplotype construction methods to enhance genomic evaluation. 66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. 577 p. ⟨hal-01535255⟩
  • Pascal Croiseau, Aurélia A. Baur, David Jonas, Chris Hoze Hoze, Julie Promp, et al.. Comparison of different Marker-Assisted BLUP models for a new French genomic evaluation. 66. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2015, Warsaw, Poland. ⟨hal-02743878⟩
  • Aurélia Baur, Sebastien Fritz, Julie Promp, O. Bulot, Didier Boichard, et al.. Implementation of the French official genomic evaluation in Brown Swiss dairy cattle. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. ⟨hal-01193910⟩
  • David Jonas, Chris Hoze, Didier Boichard, Pascal Croiseau. Application of a three-haplotype LDLA model to the French Holstein population. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. ⟨hal-01193915⟩
  • Chris Hoze, Sebastien Fritz, Florence Phocas, Didier Boichard, Vincent Ducrocq, et al.. Genomic evaluation using combined reference populations from Montbéliarde and French Simmental breeds. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. ⟨hal-01193909⟩
  • Pascal Croiseau, Marie-Noelle Fouilloux, David Jonas, Sebastien Fritz, Aurélia Baur, et al.. Extension to haplotypes of genomic evaluation algorithms. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. ⟨hal-01193907⟩
  • Chris Hoze, Sebastien Fritz, Aurélia Baur, Florence Phocas, Didier Boichard, et al.. Mise en place d’évaluations génomiques dans les races bovines laitières à effectifs limités en France. 21. Rencontres Recherches Ruminants, Dec 2014, Paris, France. ⟨hal-01194024⟩
  • Vincent Ducrocq, Pascal Croiseau, Aurélia Baur, Romain Saintilan, Sebastien Fritz, et al.. Genomic evaluation using QTL information. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. ⟨hal-01193914⟩
  • Aurélia Baur, Sebastien Fritz, Julie Promp, O. Bulot, Didier Boichard, et al.. Mise en place de l’évaluation génomique française officielle en race Brune. 21. Rencontres Recherches Ruminants, Dec 2014, Paris, France. ⟨hal-01194027⟩
  • Chris Hoze, Sébastien Fritz, Didier Boichard, Vincent Ducrocq, Pascal Croiseau. Comparison of genomic selection approaches for small breeds. Interbull Meeting 2013, Aug 2013, Nantes, France. pp.90-94. ⟨hal-01189867⟩
  • Chris Hoze Hoze, Marie-Noëlle Fouilloux, Eric E. Venot, François Guillaume, Romain Dassonneville, et al.. From the 50K chip to the HD: Imputation efficiency in 9 French dairy cattle breeds. EAAP, Aug 2012, Bratislava, Slovakia. pp.308. ⟨hal-02748900⟩
  • Didier Boichard, Francois F. Guillaume, A. A. Baur, Pascal Croiseau, Mn. Mn. Rossignol, et al.. Genomic Selection In French Dairy Cattle. Applied Genomics for Sustainable Livestock Breeding, May 2011, Melbourne, Australia. 1 p. ⟨hal-01000520⟩
  • Didier Boichard, François Guillaume, Aurélia Baur, Pascal Croiseau, Marie-Noelle Rossignol, et al.. État de l'art de la sélection génomique en France et approche multiraciale. Colloque International, La génomique bovine Contribution de la génomique à l’avenir de l’élevage bovin - International Workshop, Bovine genomics Contributions to the future of livestock, Oct 2011, Clermont-Ferrand/Cournon, France. 2 p. ⟨hal-01193641⟩
  • Didier Boichard, Francois Guillaume, A. Baur, Pascal Croiseau, M.N. Rossignol, et al.. State of the art of genomics for selection. Workshop of ICAR 2011 "New technologies and new challenges for breeding and herd management", Jun 2011, Bourg-en-Bresse, France. 1 p. ⟨hal-01019343⟩
  • Vincent Ducrocq, Sébastien S. Fritz, François F. Guillaume, Pascal Croiseau, Jean-Jacques J. J. Colleau, et al.. Genomic selection: implementation in dairy cattle. 5th QTL-MAS workshop, May 2011, Rennes, France. ⟨hal-01001363⟩
  • Carine Colombani, Pascal Croiseau, Chris Hoze, Sebastien Fritz, François Guillaume, et al.. Could genomic selection methods be efficient to detect QTLs? Application in French dairy cattle. QTLMAS, May 2011, Rennes, France. pp.30. ⟨hal-01190269⟩
  • C. Hoze, Pascal Croiseau, F. Guillaume, Aurélia Baur, L. Journaux, et al.. Use of phenotypes from multi-trait national evaluations in genomic evaluation. 62. Annual meeting of the EAAP, Aug 2011, Stavanger, Norway. pp.28. ⟨hal-01189857⟩
  • Romain Dassonneville, Sebastien Fritz, Francois Guillaume, Pascal Croiseau, Aurélia Baur, et al.. Intérêt d'une puce basse densité pour l'évalution génomique des vaches laitières.. 17. Rencontres autour des Recherches sur les Ruminants, Dec 2010, Paris, France. ⟨hal-01193611⟩
  • Pascal Croiseau, Carine Colombani, Andres Legarra, F. Guillaume, S. Fritz, et al.. Improving genomic evaluation strategies in dairy cattle through SNP pre-selection. 9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany. ⟨hal-01193548⟩
  • Carine Colombani, Andres Legarra, Pascal Croiseau, F. Guillaume, S. Fritz, et al.. Application of PLS and Sparse PLS regression in genomic selection. 9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany. ⟨hal-01193580⟩
  • S Fritz, Francois Guillaume, Pascal Croiseau, Aurélia Baur, C. Hoze, et al.. Mise en place de la sélection génomique dans les trois principales races françaises de bovins laitiers. 17. Rencontres autour des Recherches sur les Ruminants, Dec 2010, Paris, France. ⟨hal-01193615⟩
  • Didier Boichard, François Guillaume, Aurélia A. Baur, Pascal Croiseau, Marie-Noëlle M.-N. Rossignol, et al.. Genomic selection in French dairy cattle.. 9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu. ⟨hal-02822373⟩
  • Andres Legarra, Christèle C. Robert-Granié, Pascal Croiseau, Guillaume François, Sébastien Fritz. Lasso bayesiano mejorado para seleccion genomica. XV Reunion Nacional de Mejora Genetica Animal, Jun 2010, Vigo, España. pp.1-6. ⟨hal-01193386⟩
  • Andres Legarra, Christèle C. Robert-Granié, Pascal Croiseau, F. Guillaume, S. Fritz, et al.. Aptitude of Bayesian lasso for genomic selection. 9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany. ⟨hal-01193524⟩
  • Pascal Croiseau, Vincent Ducrocq. Use of the Elastic-Net algorithm for genomic selection in dairy cattle. 13th Quantitative Trait Locus and Marker Assisted Selection Workshop, Apr 2009, Wageningen, Netherlands. pp.Book of Abstracts: 15. ⟨hal-01193784⟩
  • François Guillaume, Sebastien S. Fritz, Vincent Ducrocq, Pascal Croiseau, Didier Boichard. Marker assisted EBV using a dense SNP markers map: application to the Normande and Montbéliarde breeds.. 60th Annual Meeting of the European Association for Animal Production (EAAP), 2427 August 2009, 2009, Barcelona. ⟨hal-02751164⟩
  • Pascal Croiseau, Vincent Ducrocq. Use of the elastic-net algorithm for genomic selection in dairy cattle.. 60th Annual Meeting of the European Association for Animal Production (EAAP), 2427 August 2009, 2009, Barcelona. ⟨hal-02751291⟩
  • F. Guillaume, S. Fritz, Pascal Croiseau, Andres Legarra, Christèle C. Robert-Granié, et al.. Modèles d'évaluation génomique : application aux populations bovines laitières françaises. 16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France. ⟨hal-01193599⟩

Conference poster6 documents

  • Iola Croué, Didier Boichard, Pascal Croiseau. A SNP-BLUP genomic evaluation with breed-specific SNP effects for three-way dairy crossbreds. 71st Annual Meeting of the European Association for Animal Production, Dec 2020, Virtual, France. ⟨hal-03037012⟩
  • L.-H Maugan, Iola Croué, Sebastien Fritz, Rachel Lefebvre, Pascal Croiseau, et al.. Imputation accuracy of crossbred dairy cows. 71. Annual Meeting of the European Federation of Animal Science (EAAP), Dec 2020, Virtual meeting, Portugal. Wageningen Academic Publishers, Book of abstracts, 26, 2020, Book of abstracts of the 71st annual meeting of the european federation of animal science. ⟨hal-03634220⟩
  • Sonia Eynard, Pascal Croiseau, Denis Laloë, Mario P.L. Calus, Sebastien Fritz, et al.. Updating reference population in Genomic Selection for genetic diversity conservation What can we learn from real data and simulations?. Gordon Research Conference in Quantitative Genetics and Genomics, Feb 2017, Galveston Texas, United States. 2017. ⟨hal-02787529⟩
  • Marie-Pierre Sanchez, David Jonas, Aurélia Baur, Vincent Ducrocq, Chris Hoze, et al.. Implementation of genomic selection in three French regional dairy cattle breeds. 67. Annual meeting of the European Federation of Animal Science EAAP 2016, Aug 2016, Belfast, United Kingdom. 2016, Book of Abstract of the 67th Annual Meeting of the European Federation of Animal Science. ⟨hal-01531682⟩
  • Marie-Pierre Sanchez, Armelle Gion, Anne Barbat, Sebastien S. Fritz, Guy Miranda, et al.. Using whole genome sequences to identify candidate mutations of bovine milk fatty acids and proteins in fairy cattle. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. pp.P0526, 2016. ⟨hal-02793489⟩
  • Sonia Eynard, Denis Laloë, Pascal Croiseau, Mario P. L. Calus, Sebastien Fritz, et al.. Which individual to phenotype? Optimal design of reference population for genomic selection while maintaining genetic diversity. ICQG 5, Jun 2016, Madison, Wisconsin, United States. 2016. ⟨hal-02796864⟩

Book sections1 document

  • Didier Boichard, Pascal Croiseau, Sebastien Fritz, Vincent Ducrocq. Quel futur pour l’amélioration génétique chez les espèces animales domestiques ?. Potentiels de la science pour l’avenir de l’agriculture, de l’alimentation et de l’environnement, Académie d'Agriculture, 2014. ⟨hal-01193805⟩

Reports1 document

  • Pascal Croiseau, Emilie Varaud. Analyse génétique de lignées de poules sélectionnées pour des réponses immunitaires.. [Stage] Université Paris Sud - Paris 11 (UP11), Inconnu, FRA. 2004. ⟨hal-02831634⟩