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Self-organization of a virtual multicellular organism by adding a shape model in the Cellular Potts Model.

 S. Tripodi , Pascal Ballet , Vincent Rodin
Twelfth International Conference on the Synthesis and Simulation of Living Systems - ALIFE XII ., Aug 2010, Odense-Denmark., Denmark. pp.249-256
Communication dans un congrès hal-00662566v1

Evolutions viables de formes par application de mécanismes cellulaires.

 Abdoulaye Sarr , Alexandra Fronville , Laurent Lemarchand , Pascal Ballet , Vincent Rodin
34ème séminaire de la société francophone de biologie théorique (SFBT), May 2014, SFBT, France
Communication dans un congrès hal-01119855v1

Une approche multi-agent pour la simulation en biologie cellulaire.

 Pascal Ballet , Alain Pothet , Gradimir Misevic , Anne Jeannin-Girardon , Alexandra Fronville , et al.
Matériologiques. Le vivant discret et continu, Editions Matériologiques, pp.155-194, 2013, Sciences & Philosophie, 978-2-919694-23-5
Chapitre d'ouvrage hal-00952323v1

Scale-specific auxiliary multi-task contrastive learning for deep liver vessel segmentation

 Amine Sadikine , Bogdan Badic , Jean-Pierre Tasu , Vincent Noblet , Pascal Ballet , et al.
ISBI 2023: IEEE 20th International Symposium on Biomedical Imaging, Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230364⟩
Communication dans un congrès hal-03953223v1
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3D individual based model for simultaneous growth and interaction of L. Monocytogenes and lactic acid bacteria

 Gireg Desmeulles , Fabrice Harrouet , Dominique Thuault , Véronique Huchet , Pascal Redou , et al.
9th International Conference on Predictive Modelling in Food (ICPMF9), Sep 2015, Rio de Janeiro, Brazil. pp.11-12
Communication dans un congrès hal-01339095v1
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SimCells, an advanced software for multicellular modeling Application to tumoral and blood vessel co-development

 Pascal Ballet
2018
Pré-publication, Document de travail hal-01853293v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

 Victor Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet , et al.
Theory in Biosciences, 2011
Article dans une revue hal-03469597v1
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Diversity and survival of artificial lifeforms under sedimentation and random motion

 Nicolas Glade , Olivier Bastien , Pascal Ballet
Theorie in den Biowissenschaften / Theory in Biosciences, 2017, 136 (364), pp.153. ⟨10.1007/s12064-017-0254-1⟩
Article dans une revue hal-01582506v1

Computational Energetic Model of Morphogenesis Based on Multi-agent Cellular Potts Model

 S. Tripodi , Pascal Ballet , Vincent Rodin
Advances in Computational Biology, 680 (7), Springer, pp.685-692, 2010, Advances in Experimental Medicine and Biology, ⟨10.1007/978-1-4419-5913-3_76⟩
Chapitre d'ouvrage hal-00628582v1

MorphoBlock Programming: a way to model and simulate morphogenesis of multicellular organisms.

 Pascal Ballet , S. Tripodi , Vincent Rodin
Journal of Biological Physics and Chemistry, 2009, 9 (1), pp. 37-44
Article dans une revue hal-00664450v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

 Vic Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet , et al.
Theorie in den Biowissenschaften / Theory in Biosciences, 2011, 130 (3), pp.211-228. ⟨10.1007/s12064-010-0118-4⟩
Article dans une revue hal-00643738v1
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Mutational analysis-inspired algorithms for cells self-organization towards a dynamic under viability constraints

 Alexandra Fronville , Abdoulaye Sarr , Pascal Ballet , Vincent Rodin
Self-Adaptive and Self-Organizing Systems (SASO), 2012 IEEE Sixth International Conference on, Sep 2012, Lyon, France. pp.181--186, ⟨10.1109/SASO.2012.15⟩
Communication dans un congrès hal-00781080v1

Hyperstructures 2008-2009

 Victor Norris , Anne-Françoise Batto , Pascal Ballet , Georgia Barlovatz , Gilles Bernot , et al.
modelling complex biological systems, 2009, Evry, France
Communication dans un congrès hal-03469577v1

A Software Architecture for Multi-Cellular System Simulations on Graphics Processing Units

 Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
Acta Biotheoretica, 2013, 61 (3), pp.317-327. ⟨10.1007/s10441-013-9187-3⟩
Article dans une revue hal-00952311v1

Bateaux du Nil en terre cuite pour des dieux et des hommes

 Pascal Ballet , Patrice Pomey
Patrice Pomey. La batellerie égyptienne : archéologie, histoire, ethnographie, 34, Centre d'Études Alexandrins, p. 179-199, 2015, Études Alexandrines, 9782111298545
Chapitre d'ouvrage halshs-03246522v1

An Efficient Biomechanical Cell Model to Simulate Large Multi-cellular Tissue Morphogenesis: Application to Cell Sorting Simulation on GPU

 Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
TPNC 2013, 2nd International Conference on the Theory and Practice of Natural Computing, Dec 2013, Cáceres, Spain. pp.96-107, ⟨10.1007/978-3-642-45008-2_8⟩
Communication dans un congrès istex hal-00952369v1

In silico study of mechanical stresses at the cellular level during tissue development.

 Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
BIBE 2013, 13th IEEE International Conference on BioInformatics and BioEngineering, Nov 2013, Chania, Greece. pp.1-4, ⟨10.1109/BIBE.2013.6701641⟩
Communication dans un congrès hal-00952346v1

French Flag Tracking by Morphogenetic Simulation Under Developmental Constraints

 Abdoulaye Sarr , Alexandra Fronville , Pascal Ballet , Vincent Rodin
Springer International Publishing. Lecture Notes in Computer Science, , pp 90-106, 2014, Computational Intelligence Methods for Bioinformatics and Biostatistics, 978-3-319-09041-2. ⟨10.1007/978-3-319-09042-9_7⟩
Chapitre d'ouvrage hal-01119829v1

French Flag Tracking by Morphogenetic Simulation Under Developmental Constraints - Short version

 Abdoulaye Sarr , Alexandra Fronville , Pascal Ballet , Vincent Rodin
CIBB 2013, 10th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, Jun 2013, Nice, France
Communication dans un congrès hal-01119841v1

Les céramiques d'Alexandrie aux périodes héllénistique et romaine

 Pascal Ballet
Bulletin de la Société française d'archéologie classique, 1998, 1, p. 193-199
Article dans une revue halshs-02921581v1

Metabolism modeling

 Pascal Ballet , Jean-Pierre Mazat , Christine Nazaret , S. Pérès
Bordeaux spring school on modeling and simulation of biological processes in the context of genomics, Jun 2006, France
Communication dans un congrès hal-00409855v1

Migration de cellules virtuelles déformables : Modélisation biomécanique multi-agent de la migration cellulaire

 Pascal Ballet , Philippe Tracqui
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2007, 26 (1-2), pp.149-172
Article dans une revue hal-00193853v1

A Stochastic Process Approach of the Drake Equation Parameters

 Nicolas Glade , Pascal Ballet , Olivier Bastien
International Journal of Astrobiology, 2012, 11 (2), pp.103-108. ⟨10.1017/S1473550411000413⟩
Article dans une revue hal-00744229v1

Cellular automata, reaction-diffusion and multiagents systems for artificial cell modelling

 Abdallah Zemirline , Pascal Ballet , Lionel Marcé , Patrick Amar , Gilles Bernot , et al.
Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.257-280
Communication dans un congrès hal-00827465v1
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NetBioDyn, a smart Agent-Based software to intuitively model and simulate complex biological systems

 Jérémy Rivière , Pascal Ballet , Vincent Rodin
Conference on Complex Systems (CCS), Sep 2016, Amsterdam, Netherlands. , 2016
Poster de conférence hal-01407523v1

The BioDyn Language and Simulator. Application to an immune response and E. coli and phage interaction

 Ballet Pascal , Abdallah Zemirline , Lionel Marce
Journal of Biological Physics and Chemistry, 2004, 4 (2), pp.93-101
Article dans une revue hal-00995885v1
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An efficient algorithm based on weak synchronization for distributed in virtuo biological experiments

 Vincent Rodin , Gireg Desmeulles , Pascal Ballet , Pascal Redou , Christophe Le Gal
Multiagent and Grid Systems - An International Journal of Cloud Computing , 2011, 7 (4-5), pp.159-182. ⟨10.3233/MGS-2011-0173⟩
Article dans une revue hal-00668699v1

Usage de la simulation et de l'analyse morphologique pour l'étude de la dynamique cellulaire.

 Alexandra Fronville , Abdoulaye Sarr , Pascal Ballet , Vincent Rodin
32ème séminaire de la société francophone de biologie théorique (SFBT), Jun 2012, St Flour, France
Communication dans un congrès hal-01119848v1
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HYBRID DATA-BASED MODELLING IN ONCOLOGY: SUCCESSES, CHALLENGES AND HOPES

 Angélique Stéphanou , Pascal Ballet , Gibin Powathil
Mathematical Modelling of Natural Phenomena, 2020, 15, ⟨10.1051/mmnp/2019026⟩
Article dans une revue hal-02405782v1
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Hybrid Modelling in Oncology: Sucesses, Challenges and Hopes

 Angélique Stéphanou , Pascal Ballet , Gibin Powathil
Mathematical Modelling of Natural Phenomena, 2020, 15, ⟨10.1051/mmnp/2019026⟩
Article dans une revue hal-01980757v1
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