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Number of documents

69

Curriculum vitae


 

 

 

EDUCATION                                                                                                                                      

 

Habilitation in Applied Mathematics (University of Rennes 1, 11/12/2006)

 

Master degree in Probability theory and analysis (University of Marne-la-Vallée, 1996)

 

PhD in Theoretical Solid State Physics (Orsay, University of Paris 11, 1994)

 

Engineering degree in Solid State Physics (University of Bucharest, 1989)

 

PROFESSIONAL CAREER                                                                                                         

 

Current position : Full Professor (Professeur classe exceptionnelle), Team leader in the Laboratory of Pathogen Host Interactions (LPHI) UMR 5235, University of Montpellier, since 2009.

 

 

 

Other positions

 

01/09/1999-31/08/2009, Institute for Mathematical Research (IRMAR), University of Rennes 1, Rennes, France, Associate Professor in mathematics (MCF classe normale, CNU26)

 

01/09/2005-31/08/2007, National Institute for Computer Science and Applied Mathematics (INRIA), team SYMBIOSE, Rennes, France, Visiting professor (secondment, délégation).

 

01/03/1998-31/08/2009, IRC in Polymer Physics and Department of Physics, University of Leeds, Leeds, UK, Post-doc in theoretical polymer physics.

 

01/03/1996-28/02/1998 Institute of Theoretical Physics, Raadboud University, Nijmegen, The Netherlands, HCM EU fellow in theoretical condensed matter physics.

 

01/09/1993-28/02/1996, University of Marne-la-Vallée, Noisy le Grand, France, Assistant Professor (untenured teaching and research position, ATER) in theoretical condensed matter physics.

 

01/09/1990-31/08/1993, University of Paris 11, Orsay, France, Teaching assistant (Moniteur).

 

01/01/1990-31/08/1990, Institute of Research on Materials, Bucharest, Romania, Researcher in theoretical condensed matter theory.

 

 

 

Recent Management Activities:

 

Member of the Councils of University of Rennes 1 (2008-2009) and University of Montpellier (2011-2015); Adjoint chief of the BioHealth Department at University of Montpellier (2013-2014)

 

 

 

Participation to National and International Scientific Networks Management

 

Coordinator of the Interdisciplinary axis of Pole Rabelais; Member of Labex Epigenmed; Member of the international network IPols (International Physics of Living Systems Program).

 

 

 

Participation to National and International Expert Committees

 

Expert for ERC (European Research Council), ANR (French National Research Agency), HCERES (High Council for the Evaluation of Research and Higher Education), NW0 (Netherlands Organisation for Scientific Research)

 

Member of the interdisciplinary committee CID51 of CNRS (2013-2016).

 

 

 

Editorial activity:

 

Associated Editor of Frontiers in Bioinformatics and Computational Biology.

 

 

 

Participation to program committees (PC) of international conferences:

 

Member of the PC of the International Workshop on Static Analysis and Systems Biology SASB (2011-12)

 

Member of the PC of the International Conference on Computational Methods in Systems Biology CMSB (2011-12, 2015-20)

 

Member of the PC of the Workshop on Interactions between Computer Science and Biology CS2BIO (2014)

 

Member of the PC of the IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology CIBCB (2019-20)

 

 

 

Supervision:

 

Supervision of 10 phD students, 31 master students, 5 post-docs

 

Direction of the master program “Biophysics Structure and Systems”

 

 

 

Recent invited international conferences:

 

1)    Keynote talk, CASC 2020 (Computer Algebra in Scientific Computing), Linz, Austria, Sept 14-18, 2020.

 

2)    Plenary invited talk, Workshop on Robustness, Heterogeneity and Adaptation, Gordon Center for Integrative Sciences, University of Chicago, June 20-21, 2016.

 

3)    Plenary invited talk, Symmetry and Dynamics in Biology, Paulista Medical School, (EPM – Unifesp), São Paulo -SP-Brazil, April 17, 2015.  

 

4)    Plenary invited talk, workshop Mathematical Trends in Reaction Network Theory, Copenhagen, July 1-3, 2015.

 

5)    Plenary invited talk, Applications of statistical physics in quantitative biology mini-symposium, 9th European Conference on Mathematical and Theoretical Biology, Gothenburg, Sweden, 2014.

 

6)    Invited talk, Franco-Indian Technology Summit, IT & Health, 24 Octobre 2013, New Delhi, India.

 

7)    Keynote talk, 9th BioMalPar - Evimalar Conference, 13-15 Octobre 2013, EMBL Heidelberg, Germany.

 

 

 

 

 

 

 

HONORSANDAWARDS                                                                                                                             

Medals at International Physics Olympiads (1981 bronze, 1982 silver); BGF (French government) fellow (1990-94); DAAD fellow (1995); HCM EU fellow (1996-98); bonus for scientific excellence (PES, PEDR) since 2009.


Journal articles41 documents

  • Guilherme C. P. Innocentini, Arran Hodgkinson, Fernando Antoneli, Arnaud Debussche, Ovidiu Radulescu. Push-forward method for piecewise deterministic biochemical simulations. Theoretical Computer Science, Elsevier, In press, ⟨10.1016/j.tcs.2021.05.025⟩. ⟨hal-03137189⟩
  • Marion Buffard, Aurélien Naldi, Gilles Freiss, Marcel Deckert, Ovidiu Radulescu, et al.. Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions. Biomolecules, MDPI, 2021, 11 (2), pp.308. ⟨10.3390/biom11020308⟩. ⟨hal-03160560⟩
  • Russell Bradford, James Harold Davenport, Matthew England, Hassan Errami, Vladimir Gerdt, et al.. Identifying the parametric occurrence of multiple steady states for some biological networks. Journal of Symbolic Computation, Elsevier, 2020, 98, pp.84-119. ⟨10.1016/j.jsc.2019.07.008⟩. ⟨hal-02397154⟩
  • Ovidiu Radulescu, Adrian Devenyi. Is biological randomness a statistical physics concept?. LINKs series, Louis-José Lestocart, 2019, pp.120-123. ⟨hal-02532029⟩
  • Marion Buffard, Aurélien Naldi, Ovidiu Radulescu, Peter Coopman, Romain Larive, et al.. Network Reconstruction and Significant Pathway Extraction Using Phosphoproteomic Data from Cancer Cells. Proteomics, Wiley-VCH Verlag, 2019, 19 (21-22), pp.1800450. ⟨10.1002/pmic.201800450⟩. ⟨hal-03049205⟩
  • Arran Hodgkinson, Ovidiu Radulescu, · Gilles Uzé, Dumitru Trucu. Signal Propagation in Sensing and Reciprocating Cellular Systems with Spatial and Structural Heterogeneity. Bulletin of Mathematical Biology, Springer Verlag, 2018, 80 (7), pp.1900-1936. ⟨10.1007/s11538-018-0439-x⟩. ⟨hal-02322020⟩
  • Maëlle Bellec, Ovidiu Radulescu, Mounia Lagha. Remembering the past: Mitotic bookmarking in a developing embryo. Current Opinion in Systems Biology, Elsevier, 2018, 11, pp.41-49. ⟨10.1016/j.coisb.2018.08.003⟩. ⟨hal-02323370⟩
  • Jeremy Dufourt, Antonio Trullo, Jennifer Hunter, Carola Fernandez, Jorge Lazaro, et al.. Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs. Nature Communications, Nature Publishing Group, 2018, 9 (1), ⟨10.1038/s41467-018-07613-z⟩. ⟨hal-02323402⟩
  • Suzanne Vigneron, Lena Sundermann, Jean-Claude Labbé, Lionel Pintard, Ovidiu Radulescu, et al.. Cyclin A-cdk1-Dependent Phosphorylation of Bora Is the Triggering Factor Promoting Mitotic Entry. Developmental Cell, Elsevier, 2018, 45 (5), pp.637--650.e7. ⟨10.1016/j.devcel.2018.05.005⟩. ⟨hal-01872979⟩
  • François Boulier, François Fages, Ovidiu Radulescu, Satya Swarup Samal, Andreas Schuppert, et al.. The SYMBIONT project: symbolic methods for biological networks. ACM Communications in Computer Algebra, Association for Computing Machinery (ACM), 2018, 52 (3), pp.67-70. ⟨10.1145/3313880.3313885⟩. ⟨hal-02061018⟩
  • Aurélien Naldi, Romain Larive, Urszula Czerwinska, Serge Urbach, Philippe Montcourrier, et al.. Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLoS Computational Biology, Public Library of Science, 2017, 13 (3), pp.e1005432. ⟨10.1371/journal.pcbi.1005432⟩. ⟨hal-02073659⟩
  • Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber, Nathalie Théret, et al.. Geometric analysis of pathways dynamics: application to versatility of TGF-β receptors. BioSystems, Elsevier, 2016, 149, pp.3-14. ⟨10.1016/j.biosystems.2016.07.004⟩. ⟨hal-01379033⟩
  • Marc-Antoine Fardin, Ovidiu Radulescu, Alexander Morozov, Olivier Cardoso, Julien Browaeys, et al.. Stress diffusion in shear banding wormlike micelles. Journal of Rheology, American Institute of Physics, 2015, 59 (6), pp.1335-1362. ⟨10.1122/1.4930858⟩. ⟨hal-03195234⟩
  • Sylvain Soliman, François Fages, Ovidiu Radulescu. A constraint solving approach to model reduction by tropical equilibration. Algorithms for Molecular Biology, BioMed Central, 2014, 9 (1), pp.24. ⟨10.1186/s13015-014-0024-2⟩. ⟨hal-01098530⟩
  • Vincent Noël, Dima Grigoriev, Sergey A. Vakulenko, Ovidiu Radulescu. Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models. Electronic Notes in Theoretical Computer Science, Elsevier, 2012, 284, pp.75-91. ⟨10.1016/j.entcs.2012.05.016⟩. ⟨hal-00714358⟩
  • Alina Crudu, Arnaud Debussche, Aurélie Muller, Ovidiu Radulescu. Convergence of stochastic gene networks to hybrid piecewise deterministic processes. Annals of Applied Probability, Institute of Mathematical Statistics (IMS), 2012, 22 (5), pp.1822-1859. ⟨10.1214/11-AAP814⟩. ⟨hal-00553482⟩
  • Ovidiu Radulescu, Alexander N. Gorban, Andrei Zinovyev, Vincent Noël. Reduction of dynamical biochemical reaction networks in computational biology. Frontiers in Genetics, Frontiers, 2012, 131 (2), ⟨10.3389/fgene.2012.00131⟩. ⟨hal-00770213⟩
  • Matthew L. Ferguson, Dominique Le Coq, Matthieu Jules, Stephane Aymerich, Ovidiu Radulescu, et al.. Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2012, 109 (1), pp.155 - 160. ⟨10.1073/pnas.1110541108⟩. ⟨hal-01004232⟩
  • Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, et al.. Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2011, 8 (5), pp.1223-1234. ⟨10.1109/TCBB.2010.71⟩. ⟨inria-00538134⟩
  • Ovidiu Radulescu, Anne Siegel, Elisabeth Pecou, Clément Chatelain, Sandrine Lagarrigue. Genetically regulated metabolic networks: Gale-Nikaido modules and differential inequalities. Transactions on Computational Systems Biology, Springer, 2011, Transactions on Computational Systems Biology XIII, 6575 (Lecture Notes in Computer Science 6575), pp.110-130. ⟨10.1007/978-3-642-19748-2_6⟩. ⟨inria-00538136⟩
  • Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, et al.. Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.. BMC Systems Biology, BioMed Central, 2010, 4 (1), pp.146. ⟨10.1186/1752-0509-4-146⟩. ⟨inserm-00984711⟩
  • Alina Crudu, Arnaud Debussche, Ovidiu Radulescu. Hybrid stochastic simplifications for multiscale gene networks. BMC Systems Biology, BioMed Central, 2009, 3 (1), pp.89. ⟨10.1186/1752-0509-3-89⟩. ⟨hal-00784449⟩
  • Manu Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly Gursky, Hilde Janssens, et al.. Canalization of gene expression in the Drosophila blastoderm by gap genes cross regulation. PLoS Biology, Public Library of Science, 2009, 7, pp.3. ⟨inria-00431229⟩
  • S.A. Vakulenko, Manu Manu, John Reinitz, Ovidiu Radulescu. Size Regulation in the Segmentation of Drosophila: Interacting Interfaces between Localized Domains of Gene Expression Ensure Robust Spatial Patterning. Physical Review Letters, American Physical Society, 2009, 103, pp.168102. ⟨inria-00431224⟩
  • Alexander Gorban, Ovidiu Radulescu, Andrei Zinovyev. Asymptotology of Chemical Reaction Networks. Chemical Engineering Science, Elsevier, 2009. ⟨inria-00431225⟩
  • Manu Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly Gursky, Hilde Janssens, et al.. Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. PLoS Computational Biology, Public Library of Science, 2009, 5, pp.3. ⟨inria-00431228⟩
  • Pierre Blavy, Florence Gondret, Hervé Guillou, Sandrine Lagarrigue, P.G.P. Martin, et al.. A minimal model for hepatic fatty acid balance during fasting: Application to PPAR alpha-deficient mice. Journal of Theoretical Biology, Elsevier, 2009, 261 (2), pp.266. ⟨10.1016/j.jtbi.2009.07.025⟩. ⟨hal-00559147⟩
  • Ovidiu Radulescu, Alexander Gorban, Andrei Zinovyev, Alain Lilienbaum. Robust simplifications of multiscale biochemical networks. BMC Systems Biology, BioMed Central, 2008, 2:86. ⟨inria-00331212⟩
  • Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel. Inferring the role of transcription factors in regulatory networks. BMC Bioinformatics, BioMed Central, 2008, 9, ⟨10.1186/1471-2105-9-228⟩. ⟨inria-00330578⟩
  • Alexander Gorban, Ovidiu Radulescu. Dynamic and static limitation in multiscale reaction networks, revisited. Chemical Engineering Science, Elsevier, 2008, Advances in Chemical Engineering, 34, pp.103-173. ⟨inria-00184976⟩
  • Christophe Lavelle, Hugues Berry, Guillaume Beslon, Francisco Ginelli, Jean-Louis Giavitto, et al.. From Molecules to Organisms: Towards Multiscale Integrated Models of Biological Systems. Theoretical Biology Insights, Libertas Academica Ltd, 2008, 1, pp.13-22. ⟨inria-00331281⟩
  • Ovidiu Radulescu, Aurélie Muller, Alina Crudu. Théorèmes limites pour des processus de Markov à sauts. Synthèse des résultats et applications en biologie moleculaire. Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, Lavoisier, 2007, 26 (3-4), pp.443-469. ⟨10.3166/tsi.26.443-469⟩. ⟨inria-00181451⟩
  • Alexander Gorban, Ovidiu Radulescu. Dynamical robustness of biological networks with hierarchical distribution of time scales. IET Systems Biology, Institution of Engineering and Technology, 2007. ⟨inria-00181450⟩
  • Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel. Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2007, 7, pp.37-43. ⟨inria-00178914⟩
  • Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne. Optimiser un plan d'expérience à partir de modèles qualitatifs?. Biofutur, Elsevier - Cachan : Lavoisier, 2007, 275, pp.27-31. ⟨inria-00178791⟩
  • Anne Siegel, Ovidiu Radulescu, Michel Le Borgne, Philippe Veber, Julien Ouy, et al.. Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks. BioSystems, Elsevier, 2006, 84, pp.153-174. ⟨inria-00178809⟩
  • Ovidiu Radulescu, Sandrine Lagarrigue, Anne Siegel, Philippe Veber, Michel Le Borgne. Topology and static response of interaction networks in molecular biology. Journal of the Royal Society Interface, the Royal Society, 2006, 3 (6), pp.185 - 196. ⟨10.1098/rsif.2005.0092⟩. ⟨inria-00178842⟩
  • Philippe Veber, Michel Le Borgne, Anne Siegel, Sandrine Lagarrigue, Ovidiu Radulescu. Complex Qualitative Models in Biology: a new approach. Complexus, Karger, 2005, 2, pp.140-151. ⟨inria-00178819⟩
  • Ovidiu Radulescu, P. D. Olmsted, J. P. Decruppe, Sandra Lerouge, Jean-François Berret, et al.. Timescales in shear banding of wormlike micelles. EPL - Europhysics Letters, European Physical Society/EDP Sciences/Società Italiana di Fisica/IOP Publishing, 2003, 62, pp.230-236. ⟨hal-00136480⟩
  • Ovidiu Radulescu, T. Janssen, J. Etrillard. Dynamics of modulated and composite aperiodic crystals: the signature of the inner polarization in the neutron coherent inelastic scattering. European Physical Journal B: Condensed Matter and Complex Systems, Springer-Verlag, 2002, 29, pp.385-398. ⟨hal-00122070⟩
  • Ovidiu Radulescu. A classification of the periodic directions in the rational approximants of icosahedral quasicrystals. Journal de Physique I, EDP Sciences, 1993, 3 (10), pp.2099-2113. ⟨10.1051/jp1:1993234⟩. ⟨jpa-00246854⟩

Conference papers14 documents

  • Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, et al.. Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CASC 2017 - 19th International Workshop on Computer Algebra in Scientific Computing, Sep 2017, Beijing, China. ⟨10.1007/978-3-319-66320-3⟩. ⟨hal-01648691⟩
  • Russell Bradford, James Davenport, Matthew England, Hassan Errami, Vladimir Gerdt, et al.. A Case Study on the Parametric Occurrence of Multiple Steady States. ISSAC 2017 - International Symposium on Symbolic and Algebraic Computation, Jul 2017, Kaiserslautern, Germany. pp.45-52, ⟨10.1145/3087604.3087622⟩. ⟨hal-01648694⟩
  • Sylvain Soliman, François Fages, Ovidiu Radulescu. A Constraint Solving Approach to Tropical Equilibration and Model Reduction. WCB - ninth Workshop on Constraint Based Methods for Bioinformatics, colocated with CP 2013, Sep 2013, Uppsala, Sweden. pp.27--36. ⟨hal-00906419⟩
  • Vincent Noël, Dima Grigoriev, Sergey A. Vakulenko, Ovidiu Radulescu. Tropicalization and tropical equilibration of chemical reactions. International Workshop on Tropical and Idempotent Mathematics, Independent University of Moscow, Aug 2012, Moscow, Russia. pp.261-275, ⟨10.1090/conm/616/12316⟩. ⟨hal-00812614⟩
  • Vincent Noël, Dima Grigoriev, Sergey A. Vakulenko, Ovidiu Radulescu. Hybrid models of the cell cycle molecular machinery. Hybrid Systems and Biology (HSB 2012), Sep 2012, Newcastle, United States. pp.88-105, ⟨10.4204/EPTCS.92⟩. ⟨hal-00770222⟩
  • Matthew L. Ferguson, Dominique Le Coq, Matthieu Jules, Bryan Chun, Stephane Aymerich, et al.. Two types of transcriptional repression in living cells of [i]Bacillus subtilis[/i] characterized by number and brightness analysis. 55. Annual Meeting of the Biophysical-Society, Mar 2011, Baltimore, Maryland, United States. ⟨10.1016/j.bpj.2010.12.1179⟩. ⟨hal-01190611⟩
  • Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Zinovyev, Emmanuel Barillot, et al.. Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI 2009 Workshop -- Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT), Apr 2009, Thessalonik, Greece. pp.72-87. ⟨inria-00429801⟩
  • Alexander Gorban, Ovidiu Radulescu, Andrei Zinovyev. Asymptotology of Chemical Reaction Networks. International Symposium on Mathematics in Chemical Kinetics and Engineering (MACKIE-2009), Nov 2009, Ghent, Belgium. ⟨inria-00599258⟩
  • Carito Guziolowski, Jérémy Gruel, Ovidiu Radulescu, Anne Siegel. CURATING A LARGE-SCALE REGULATORY NETWORK BY EVALUATING ITS CONSISTENCY WITH EXPRESSION DATASETS. CIBB 2008: COMPUTATIONAL INTELLIGENCE METHODS FOR BIOINFORMATICS AND BIOSTATISTICS, Oct 2008, Salerno, Italy. pp.144-155. ⟨inria-00331385⟩
  • Benoit Lasne, Ovidiu Radulescu, Sandra Lerouge. Timescales and instabilities of shear thinning solutions of wormlike micelles. International Congress on Rheology 2008, Aug 2008, Monterey, United States. ⟨inria-00331217⟩
  • Pierre Blavy, Florence Gondret, Hervé Guillou, Sandrine Lagarrigue, Pascal G.P. Martin, et al.. A minimal and dynamic model for fatty acid metabolism in mouse liver. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2008, Lille (FR), France. ⟨hal-00729742⟩
  • Pierre Blavy, Florence Gondret, Hervé Guillou, Sandrine Lagarrigue, Pascal G.P. Martin, et al.. A minimal and dynamic model for fatty acid metabolism in mouse liver. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2008, Lille, France. ⟨hal-02756716⟩
  • Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne. Qualitative response of interaction networks: application to the validation of biological models. 6th International Congress on Industrial and Applied Mathematics. ICIAM 07, Jul 2007, Zurich, Switzerland. ⟨inria-00178854⟩
  • Pierre Blavy, Anne Siegel, Ovidiu Radulescu, Florence Gondret, Jaap van Milgen, et al.. Modélisation multi-organes et multi-espèces du métabolisme des lipides. 2. Journées d'Animation Scientifique du Département PHASE, Oct 2007, Tours, France. ⟨hal-02756643⟩

Poster communications1 document

  • François Boulier, Francois Fages, Ovidiu Radulescu, Satya Swarup Samal, Andreas Schuppert, et al.. The SYMBIONT Project: Symbolic Methods for Biological Networks. ISSAC 2018, Jul 2018, New York City, NY, United States. ⟨hal-02397143⟩

Book sections3 documents

  • Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm. A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. Computer Algebra in Scientific Computing: 22nd International Workshop - CASC 2020, pp.492-509, 2020, ⟨10.1007/978-3-030-60026-6_29⟩. ⟨hal-02977486⟩
  • Nathalie Theret, Jérôme Feret, Arran Hodgkinson, Pierre Boutillier, Pierre Vignet, et al.. Integrative models for TGF-$\beta$ signaling and extracellular matrix. Sylvie Ricard-Blum. Extracellular Matrix Omics, 7, Springer, pp.17, 2020, Biology of Extracellular Matrix, 978-3-030-58329-3. ⟨10.1007/978-3-030-58330-9_10⟩. ⟨hal-02458073⟩
  • Vincent Noël, Sergey A. Vakulenko, Ovidiu Radulescu. Algorithm for identification of piecewise smooth hybrid systems: application to Eukaryotic Cell Cycle regulation. Teresa Przytycka, Marie-France Sagot. Algorithms in Bioinformatics, Springer, pp.225-236, 2011, Lecture Notes in Computer Science, vol. 6833, 9783642230370. ⟨10.1007/978-3-642-23038-7_20⟩. ⟨hal-00725282⟩

Other publications2 documents

  • François Boulier, François Fages, Ovidiu Radulescu, Satya Samal, Andreas Schuppert, et al.. The SYMBIONT Project: Symbolic Methods for Biological Networks. 2018. ⟨hal-01889825⟩
  • David Chavalarias, Paul Bourgine, Edith Perrier, Fredéric Amblard, François Arlabosse, et al.. French Roadmap for complex Systems 2008-2009. 2009. ⟨hal-00392486⟩

Preprints, Working Papers, ...6 documents

  • Virginia Pimmett, Matthieu Dejean, Carola Fernandez, Antonio Trullo, Edouard Bertrand, et al.. Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics. 2021. ⟨hal-03155482⟩
  • Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Zinovyev, et al.. LNetReduce: tool for reducing linear dynamic networks with separated time scales. 2021. ⟨hal-03226633⟩
  • Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm. A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. 2020. ⟨hal-03017913⟩
  • Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher. Algorithmic Reduction of Biological Networks With Multiple Time Scales. 2020. ⟨hal-02977490⟩
  • Katiana Tantale, Encarnation Garcia-Oliver, Adèle l'Hostis, Yueyuxio Yang, Marie- Cécile Robert, et al.. Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting. 2020. ⟨hal-03019157⟩
  • Vincent Noël, Sergey Vakulenko, Ovidiu Radulescu. A hybrid mammalian cell cycle model. 2013. ⟨hal-01158705⟩

Reports2 documents

  • Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel. Inferring the role of transcription factors in regulatory networks. [Research Report] 2007. ⟨inria-00185038⟩
  • Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel. Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study. [Research Report] RR-6190, INRIA. 2007, pp.14. ⟨inria-00145537v2⟩