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Keywords

European projects

Number of documents

31

CV Olivier Rué


Journal articles15 documents

  • Simon Poirier, Ngoc-Du Martin Luong, Valérie Anthoine, Sandrine Guillou, Jeanne-Marie Membré, et al.. Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere. Data in Brief, Elsevier, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩. ⟨hal-02914971⟩
  • Emilie Lejal, Agustin Estrada-Peña, Maud Marsot, Jean-Francois Cosson, Olivier Rué, et al.. Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis. Frontiers in Microbiology, Frontiers Media, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩. ⟨hal-02790980⟩
  • Laurent Naudon, Adrien François, Mahendra Mariadassou, Magali Monnoye, Catherine Philippe, et al.. First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice. Behavioural Brain Research, Elsevier, 2020, 384, ⟨10.1016/j.bbr.2020.112549⟩. ⟨hal-02503302⟩
  • Alessandra Danile de Lira, Caroline Isabel Kothe, Olivier Rué, Cédric Midoux, Michele Bertoni Mann, et al.. Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD. Journal of Applied Microbiology, Wiley, 2020, 128 (5), pp.1448-1459. ⟨10.1111/jam.14566⟩. ⟨hal-02903118⟩
  • Sabrina Saltaji, Olivier Rué, Valérie Sopena, Sophie Sablé, Fatoumata Tambadou, et al.. Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture. Foods, MDPI, 2020, 9 (5), pp.622. ⟨10.3390/foods9050622⟩. ⟨hal-02633276⟩
  • Kevin Nay, Maxence Jollet, Benedicte Goustard, Narjes Baati, Barbara Vernus, et al.. Gut bacteria are critical for optimal muscle functiona potential link with glucose homeostasis. AJP - Endocrinology and Metabolism, American Physiological Society, 2019, 317 (1), pp.E158-E171. ⟨10.1152/ajpendo.00521.2018⟩. ⟨hal-02152871⟩
  • Eric Dugat-Bony, Pascal Bonnarme, Sébastien Fraud, Jessie Catellote, Anne-Sophie Sarthou, et al.. Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses. Food Research International, 2019, 125, pp.108643. ⟨10.1016/j.foodres.2019.108643⟩. ⟨hal-02349939⟩
  • Tiago P. Delforno, Thais Z. Macedo, Cedric Midoux, Gileno V. Lacerda, Olivier Rué, et al.. Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater. Science of the Total Environment, Elsevier, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩. ⟨hal-01888286⟩
  • Hélène Falentin, Lucas Auer, Mahendra Mariadassou, Géraldine Pascal, Olivier Rué, et al.. Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding : Partage de pratiques et retours d'expérience des membres du pôle métagénomique du PEPI IBIS. Cahiers des Techniques de l'INRA, INRA, 2019, 2019 (97), pp.1-23. ⟨hal-02311421⟩
  • Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩
  • Simon Poirier, Olivier Rué, Raphaelle Peguilhan, Gwendoline Coeuret, Monique Zagorec, et al.. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing. PLoS ONE, Public Library of Science, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩. ⟨hal-02621350⟩
  • Simon Poirier, Olivier Rué, Gwendoline Coeuret, Marie-Christine Champomier-Verges, Valentin Loux, et al.. Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products. BMC Research Notes, BioMed Central, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩. ⟨hal-02048857⟩
  • Christine Gaspin, Olivier Rué, Matthias Zytnicki. Ingredients for in silico miRNA identification and annotation. JSM Biotechnology and Biomedical Engineering, 2016, 3 (5), pp.1-5. ⟨hal-01607400⟩
  • Thibaud Dugat, Marie-Noelle Rossignol, Olivier Rué, Valentin Loux, Sylvain Marthey, et al.. Draft Anaplasma phagocytophilum Genome Sequences from Five Cows, Two Horses, and One Roe Deer Collected in Europe.. Genome Announcements, American Society for Microbiology, 2016, 4 (6), 2 p. ⟨10.1128/genomeA.00950-16⟩. ⟨hal-01594527⟩
  • Amélie Juanchich, Philippe Bardou, Olivier Rué, Jean-Charles Gabillard, Christine Gaspin, et al.. Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. BMC Genomics, BioMed Central, 2016, 17:164 (1), pp.1-12. ⟨10.1186/s12864-016-2505-9⟩. ⟨hal-01509042⟩

Conference papers9 documents

  • Julie Cremaschi, Olivier Rué, Florence Deau, Philippe Lemanceau, Valentin Loux, et al.. Shotgun metagenomics sequencing of the rhizosphere microbiota associated to seven ecotypes of Medicago truncatula. Rhizosphere 5, Jul 2019, Saskatoon, Saskatchewan, Canada. ⟨hal-02735116⟩
  • Olivier Rué, Simon Poirier, Raphaelle Peguilhan, Valentin Loux, Marie-Christine Champomier-Vergès, et al.. Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiota. JOBIM 20. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. ⟨hal-02947091⟩
  • Olivier Rué. Deciphering intra-species bacterial diversity using gyrB amplicon sequencing. JOBIM 2019, Société Française de Bio-Informatique (SFBI). FRA.; Centre National de la Recherche Scientifique (CNRS). FRA.; Institut Français de Bioinformatique (IFB). FRA., Jul 2019, Nantes, France. 422 p. ⟨hal-02266901⟩
  • Elisa Michel, Judith Legrand, Estelle Masson, Sandrine Bubendorff, Stephane Guezenec, et al.. Domestication of microbial communities for bread making: insights from a participatory research project. The 2019 Congress of the European Society for Evolutionary Biology, ESEB, Aug 2019, Turku, Finland. ⟨hal-02950758⟩
  • Delphine Sicard, Elisa Michel, Judith Legrand, Estelle Masson, Sandrine Bubendorff, et al.. Baker’s bread-making practices and house microbiota shape fungal species diversity in french sourdoughs. Harlan III, Jun 2019, Montpellier, France. ⟨hal-02950822⟩
  • Elisa Michel, Maria Belen Carbonetto, Charlotte Urien, Emilie Lhomme, Stephane Guezenec, et al.. Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread. Second Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. ⟨hal-02008729⟩
  • Maxence Jollet, Barbara Vernus, Anne Bonnieu, Mahendra Mariadassou, Olivier Rué, et al.. Is skeletal muscle remodeling associated with gut microbiota signature?. 6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1. ⟨hal-02736948⟩
  • Joëlle Amselem, Nicolas Francillonne, Célia Michotey, Thomas Letellier, Jean-Marc Aury, et al.. An integrated information system dedicated to oak genomics and genetics. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides. ⟨hal-01839185⟩
  • Joelle Amselem, Jean Marc Aury, Nicolas Francillonne, Tina Alaeitabar, Corinne da Silva, et al.. Annotation of the oak genome sequence and associated bioinformatic resources. IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p. ⟨hal-02741128⟩

Poster communications7 documents

  • Claire Vincent, Serge Casaregola, Monika Coton, Céline Delbes, Hugo Devillers, et al.. Testing markers to characterize microbial communities in food ecosystems using a metagenomics approach. JOBIM, Jun 2020, Montpellier, France. ⟨hal-02914960⟩
  • Cedric Midoux, Franciele Camargo, Olivier Rué, Mahendra Mariadassou, Valentin Loux, et al.. A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste. JOBIM, Jun 2020, Montpellier, France. ⟨hal-02902758⟩
  • Cedric Midoux, Tiago P. Delforno, Thais Z. Macedo, Gileno V. Lacerda, Olivier Rué, et al.. Feedback on a c omparative metatranscriptomic analysis. JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. 2019, JOBIM 2019. ⟨hal-02735859⟩
  • Cedric Midoux, Olivier Rué, Olivier Chapleur, Mahendra Mariadassou, Théodore Bouchez, et al.. Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data. JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. 2018, JOBIM 2018. ⟨hal-02737257⟩
  • Elisa Michel, Maria Belen Carbonetto, Charlotte Urien, Emilie Lhomme, Stephane Guezenec, et al.. Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread. II Joint Congress on Evolutionary Biology • Montpellier 2018, Aug 2018, Montpellier, France. ⟨hal-02954338⟩
  • Simon Poirier, Raphaelle Peguilhan, Olivier Rué, Valentin Loux, Marie-Christine Champomier-Verges, et al.. Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiotaImproving. Food Micro 2018, Sep 2018, Berlin, Germany. 2018. ⟨hal-02786728⟩
  • Olivier Rué, Valentin Loux, Sophie Schbath. New -omics data analysis activity on Migale platform for MEM community. Journées d'Animation MEM 2017, Jan 2017, Paris la Vilklette, France. 2017. ⟨hal-01730003⟩